BAC Information

Click to search

BAC

Clone NameB6Ng01-204H17
Chromosome1 (Build37)
Map Location 149,004,334 - 149,203,163
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204H17.bB6Ng01-204H17.g
ACCGA024418GA024419
length1,1951,106
definitionB6Ng01-204H17.b B6Ng01-204H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,004,334 - 149,005,479)(149,202,070 - 149,203,163)
sequence
gaattcagtatacttgaaaaacaaataattgttcataattacacagggca
aaaatataacttaaaagaaacaaattaatgctcttcgaacaatagaattt
aaaagaccgggtttctgtatgtatatttctttttgtgaactaaacagaat
gaaatttgtttgattttcaaagggctccatgatactatctctgtctttta
catcatttggtgtcatcaatacattgtttgctgtagtcctctgatttatc
acgtaactgaaattttattaaacagttctgtctggtgtattttatctctc
taaactcacataaaagggcttcagaagttcaaaataatttagcactgagg
aaaatgatcagggtaaattacattgcatttggaggcctttctagagataa
aaataaatgactaatagttagtaaatgtcaactacaaagaaaatggtaaa
tcacagatgaaccagtagatgttttcgcagtcgttttgacaagtgtgtaa
aaatgacaaggaataagagaatttatataataacattgaatcttctcagt
gtagatatatgtatacattcaggtgcatgaactctttcagtgctgaaaga
aacagtctataacacacacttcggtaaacacatcctcctaattattcgta
ttgatgtcaaaaggactgatgttaaatctgtcattttaaaactcatttat
taggactgagagtattattgtagtagtttcatccaggctctttcctctct
ggcccatgctccaaataataatattttggactcaaattatatttacaaat
acctttggtcatacatgttaggctcttctcttgacttaggtcataactca
catttaaccccgcttatttttatccttattctgtcacgtggctgggttat
tttataatccagaaaccaagattctggtctttctcattatcctcccaagg
gaaaatcctccccagctggttggtatcccagaaattttctttcctccaag
aatgagtccttcattccttatttttcctggcttaagtcataggaatatca
gaattatttaatttacaggtgttcactttctaaacaacataaggataatt
tctatcttacataatcctaatacatttctaattcccaacaatttaaacct
atgtgtgggcatccattcaatttatattttacatttacaaaaatg

gaattcactcctcaatgattctatttttatatctagcatttattactatt
cctatgagcagggcaattttaaaccttattttatctttggttgatttcaa
tcattcataatttccacctcttttaatcacttttcagtgtgtgtcttggg
ataattctaacagatctctttgacttacattctctattctaagtatctat
cgcattggacaatcataaaacttgtcatataccagcagtttccttttttc
tttagtgtgcctatgatcaataatttgtgagatatgaaaatgcaattcat
atattattacaattaccttgatttattttaatagattgctgtcatatata
ggggttccaaataaaacagcaagctatataattttatgacttagaacatt
caaagaaatatctctttgaaatcagtctatatttgtgcaacatcatgatt
atattcatttatcaagttccagcacatatttctacataatcagctgcatt
tatttactagtctattagttacaatgtccatgagtagaaagatttcttca
tgctttataaaattaagacagtaagtgagttctgcattttctttgtgact
gttgttcgatgtctgggcttacacatctgataaaaataatttgaagtaag
gaagacttaattttttcagagtctgtgatagtttcagtttattttcactt
ggctccattgtatgtgggcctttaatgaggcagagaatcatagctataag
tgtgaagtggagtgatgacgctaagctaaaggcaagtaggtggggaatag
agagagaagagatttagggacaaatgatatagttgcaaaaagcaagttac
acattttctttcttcccagatgtatcttgcaattactgtgctaaggtatg
agagccctcatgacccaatcatatctgcaatcttatacctcaatcatacc
ttatatcgaaaggcacactttccagtgttatgaatcttttaaatattttg
tataaccagcttttttgtccctctcttgtcttccacatagttcttattcc
aaaatgctcattactccatatcttctcctaatttttttagaatatcttgt
gtattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149004334_149005479
seq2: B6Ng01-204H17.b_34_1228

seq1  GAATTCAGTATACTTGAAAAACAAATAATTGTTCATAATTACACAGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATACTTGAAAAACAAATAATTGTTCATAATTACACAGGGCA  50

seq1  AAAATATAACTTAAAAGAAACAAATTAATGCTCTTCGAACAATAGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAACTTAAAAGAAACAAATTAATGCTCTTCGAACAATAGAATTT  100

seq1  AAAAGACCGGGTTTCTGTATGTATATTTCTTTTTGTGAACTAAACAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCGGGTTTCTGTATGTATATTTCTTTTTGTGAACTAAACAGAAT  150

seq1  GAAATTTGTTTGATTTTCAAAGGGCTCCATGATACTATCTCTGTCTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGTTTGATTTTCAAAGGGCTCCATGATACTATCTCTGTCTTTTA  200

seq1  CATCATTTGGTGTCATCAATACATTGTTTGCTGTAGTCCTCTGATTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTGGTGTCATCAATACATTGTTTGCTGTAGTCCTCTGATTTATC  250

seq1  ACGTAACTGAAATTTTATTAAACAGTTCTGTCTGGTGTATTTTATCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACTGAAATTTTATTAAACAGTTCTGTCTGGTGTATTTTATCTCTC  300

seq1  TAAACTCACATAAAAGGGCTTCAGAAGTTCAAAATAATTTAGCACTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCACATAAAAGGGCTTCAGAAGTTCAAAATAATTTAGCACTGAGG  350

seq1  AAAATGATCAGGGTAAATTACATTGCATTTGGAGGCCTTTCTAGAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATCAGGGTAAATTACATTGCATTTGGAGGCCTTTCTAGAGATAA  400

seq1  AAATAAATGACTAATAGTTAGTAAATGTCAACTACAAAGAAAATGGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGACTAATAGTTAGTAAATGTCAACTACAAAGAAAATGGTAAA  450

seq1  TCACAGATGAACCAGTAGATGTTTTCGCAGTCGTTTTGACAAGTGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGAACCAGTAGATGTTTTCGCAGTCGTTTTGACAAGTGTGTAA  500

seq1  AAATGACAAGGAATAAGAGAATTTATATAATAACATTGAATCTTCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAGGAATAAGAGAATTTATATAATAACATTGAATCTTCTCAGT  550

seq1  GTAGATATATGTATACATTCAGGTGCATGAACTCTTTCAGTGCTGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATATGTATACATTCAGGTGCATGAACTCTTTCAGTGCTGAAAGA  600

seq1  AACAGTCTATAACACACACTTCGGTAAACACATCCTCCTAATTATTCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTATAACACACACTTCGGTAAACACATCCTCCTAATTATTCGTA  650

seq1  TTGATGTCAAAAGGACTGATGTTAAATCTGTCATTTTAAAACTCATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCAAAAGGACTGATGTTAAATCTGTCATTTTAAAACTCATTTAT  700

seq1  TAGGACTGAGAGTATTATTGTAGTAGTTTCATCCAGGCTC-TTCCTCTCT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGACTGAGAGTATTATTGTAGTAGTTTCATCCAGGCTCTTTCCTCTCT  750

seq1  GGCCCATGCTCCAAATAATAATA-TTTGGACTCAAATTATATTTACAAAT  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCCCATGCTCCAAATAATAATATTTTGGACTCAAATTATATTTACAAAT  800

seq1  ACC-TTGGTCATACATG-TAGGCTCTTCTC-TGAC-TAGGTCATAACTCA  844
      ||| ||||||||||||| |||||||||||| |||| ||||||||||||||
seq2  ACCTTTGGTCATACATGTTAGGCTCTTCTCTTGACTTAGGTCATAACTCA  850

seq1  CATT--AACCCGCTTATTTTAATCCTTATTCTGTCACGTGGCT-GGTTA-  890
      ||||  | |||||||||||| |||||||||||||||||||||| ||||| 
seq2  CATTTAACCCCGCTTATTTTTATCCTTATTCTGTCACGTGGCTGGGTTAT  900

seq1  TTTATAAT-CAGAAACCAAGATTCT-GTC-TTCTCA-TATCTTCC--AAG  934
      |||||||| |||||||||||||||| ||| |||||| |||| |||  | |
seq2  TTTATAATCCAGAAACCAAGATTCTGGTCTTTCTCATTATCCTCCCAAGG  950

seq1  GAAAATC--TCCCAGCTGGTT-GTATCCCAGAA--TTTCTTTCCTCCAAG  979
      |||||||   ||||||||||| |||||||||||  |||||||||||||||
seq2  GAAAATCCTCCCCAGCTGGTTGGTATCCCAGAAATTTTCTTTCCTCCAAG  1000

seq1  -ATG-GTCC-TCATCC----TATTTCCT-GCCTAAGTCATAGG-ATATCA  1020
       ||| |||| |||| |    | |||||| || ||||||||||| ||||||
seq2  AATGAGTCCTTCATTCCTTATTTTTCCTGGCTTAAGTCATAGGAATATCA  1050

seq1  GATTTATT--ATTTACAGGTG-TCAC-TTCCAAACAACAT-AGGATA--T  1063
      || |||||  ||||||||||| |||| ||| ||||||||| ||||||  |
seq2  GAATTATTTAATTTACAGGTGTTCACTTTCTAAACAACATAAGGATAATT  1100

seq1  TCTATC-TACAT-ATTCTAATACA-TTCTA--TTCCAACAATT--AAACT  1106
      |||||| ||||| || |||||||| |||||  | |||||||||  || ||
seq2  TCTATCTTACATAATCCTAATACATTTCTAATTCCCAACAATTTAAACCT  1150

seq1  ATGT---GGCAT-CATTCAATTTATTTTTAACA-TTACAAAAATG  1146
      ||||   ||||| |||||||||||| ||| ||| |||||||||||
seq2  ATGTGTGGGCATCCATTCAATTTATATTTTACATTTACAAAAATG  1195


seq1: chr1_149202070_149203163
seq2: B6Ng01-204H17.g_68_1173 (reverse)

seq1  AAATACACAAGATA-TCTAAAAAATATA-GAG-AGATATGGAGTAATGAG  47
      |||||||||||||| |||||||||  || ||| |||||||||||||||||
seq2  AAATACACAAGATATTCTAAAAAAATTAGGAGAAGATATGGAGTAATGAG  50

seq1  CATTTTGGA--TAGAACTATGTGGAGGAC-AGAGAGGGACAAAAAAGCTG  94
      |||||||||   ||||||||||||| ||| ||||||||||||||||||||
seq2  CATTTTGGAATAAGAACTATGTGGAAGACAAGAGAGGGACAAAAAAGCTG  100

seq1  GTTATACAAAATATTTAAAAGATTCAT-ACACTGG-AAGTGTGGCCTTCG  142
      ||||||||||||||||||||||||||| ||||||| ||||||| | ||||
seq2  GTTATACAAAATATTTAAAAGATTCATAACACTGGAAAGTGTGCCTTTCG  150

seq1  ATAT-AGGTATGATTGAGGTATAAGATTGCAGATATGATTGGGTCATGAG  191
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGTATGATTGAGGTATAAGATTGCAGATATGATTGGGTCATGAG  200

seq1  GGCTCTCATACCTTAGCACAGT-ATTGCAAGATACATCTGGGAAG-AAGA  239
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  GGCTCTCATACCTTAGCACAGTAATTGCAAGATACATCTGGGAAGAAAGA  250

seq1  AAATGTGTAACTTGCTTTTTGC-ACTATATCATTTGTCCCTAAATCTCTT  288
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATGTGTAACTTGCTTTTTGCAACTATATCATTTGTCCCTAAATCTCTT  300

seq1  CTCTCTCTATTCCCCACCTACTTGCCTTTAGCTTAGCGTCATCACTCCAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTATTCCCCACCTACTTGCCTTTAGCTTAGCGTCATCACTCCAC  350

seq1  TTCACACTTATAGCTATGATTCTCTGCCTCATTAAAGGCCCACATACAAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTTATAGCTATGATTCTCTGCCTCATTAAAGGCCCACATACAAT  400

seq1  GGAGCCAAGTGAAAATAAACTGAAACTATCACAGACTCTGAAAAAATTAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAAGTGAAAATAAACTGAAACTATCACAGACTCTGAAAAAATTAA  450

seq1  GTCTTCCTTACTTCAAATTATTTTTATCAGATGTGTAAGCCCAGACATCG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTACTTCAAATTATTTTTATCAGATGTGTAAGCCCAGACATCG  500

seq1  AACAACAGTCACAAAGAAAATGCAGAACTCACTTACTGTCTTAATTTTAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGTCACAAAGAAAATGCAGAACTCACTTACTGTCTTAATTTTAT  550

seq1  AAAGCATGAAGAAATCTTTCTACTCATGGACATTGTAACTAATAGACTAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGAAGAAATCTTTCTACTCATGGACATTGTAACTAATAGACTAG  600

seq1  TAAATAAATGCAGCTGATTATGTAGAAATATGTGCTGGAACTTGATAAAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATGCAGCTGATTATGTAGAAATATGTGCTGGAACTTGATAAAT  650

seq1  GAATATAATCATGATGTTGCACAAATATAGACTGATTTCAAAGAGATATT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATCATGATGTTGCACAAATATAGACTGATTTCAAAGAGATATT  700

seq1  TCTTTGAATGTTCTAAGTCATAAAATTATATAGCTTGCTGTTTTATTTGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAATGTTCTAAGTCATAAAATTATATAGCTTGCTGTTTTATTTGG  750

seq1  AACCCCTATATATGACAGCAATCTATTAAAATAAATCAAGGTAATTGTAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTATATATGACAGCAATCTATTAAAATAAATCAAGGTAATTGTAA  800

seq1  TAATATATGAATTGCATTTTCATATCTCACAAATTATTGATCATAGGCAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATGAATTGCATTTTCATATCTCACAAATTATTGATCATAGGCAC  850

seq1  ACTAAAGAAAAAAGGAAACTGCTGGTATATGACAAGTTTTATGATTGTCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAAAAAAGGAAACTGCTGGTATATGACAAGTTTTATGATTGTCC  900

seq1  AATGCGATAGATACTTAGAATAGAGAATGTAAGTCAAAGAGATCTGTTAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGATAGATACTTAGAATAGAGAATGTAAGTCAAAGAGATCTGTTAG  950

seq1  AATTATCCCAAGACACACACTGAAAAGTGATTAAAAGAGGTGGAAATTAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCCAAGACACACACTGAAAAGTGATTAAAAGAGGTGGAAATTAT  1000

seq1  GAATGATTGAAATCAACCAAAGATAAAATAAGGTTTAAAATTGCCCTGCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATTGAAATCAACCAAAGATAAAATAAGGTTTAAAATTGCCCTGCT  1050

seq1  CATAGGAATAGTAATAAATGCTAGATATAAAAATAGAATCATTGAGGAGT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAATAGTAATAAATGCTAGATATAAAAATAGAATCATTGAGGAGT  1100

seq1  GAATTC  1094
      ||||||
seq2  GAATTC  1106


| Home | SequenceCutter | Blast | Download |