BAC Information

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BAC

Clone NameB6Ng01-204I15
Chromosome1 (Build37)
Map Location 107,140,739 - 107,320,972
singlet/doubletdoublet
Overlap geneRnf152
Upstream geneLOC383546, LOC100041134, Cdh20
Downstream geneLOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204I15.bB6Ng01-204I15.g
ACCGA024462GA024463
length1,071176
definitionB6Ng01-204I15.b B6Ng01-204I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,319,925 - 107,320,972)(107,140,739 - 107,140,917)
sequence
gaattcactgcagaccctgtcttcctgcgtggcgtatggactttgggttg
gcttcacccaatcagaggaggtatctggcgtgatcatgcctatggatttg
acttactcagttagacactttgcaaaaaggacatattctccttgtaccta
tgcaaatactgctctggctgtataggtggaggggctgtggactggagcga
tggctcagcagttaggagcatttgatgttcttacaggggaccagagttca
gtccccagcacctgcatcaggtgtcaggaagctcacagtagtctgtcact
ctagcttcagaggacctgaaaccctcttctggcctctgtgggcacctgca
tacatgtggcatatactcagatatacacaacatagaaacaggtttaatga
caaaggaagaaaaagacccccaggaatgtgtttggcagaacacccatcca
ctgctgctattatcccattacttttgtgtatgaaatgattgctgaatgat
tttgaaaaaaaatcatacattaaaagtaatttttcctataatttatgcat
tataatgtagattaatattttccagaaaaatttctccccaaattccgaag
ttcagttggaataaaacaccaatgaaagaggttttaaccagtttgagggg
tgcagcctgcaaaatttgagggttggtgctaagctacaaagaacagagag
tttcttttcctcttctgtccatttaaatagaacagtgaacacaattaagt
gagttccctttagtcatccggtcctcgggaattgatttgtgcttgggtga
tctcagactaaacagtgtgtttccaggaaggctttgctgtgtgaggagtg
tctgggatttgcatgcagcccatctcacagtctgttgggggagggattct
ttttaatggggtgtgggcctgccagcctgttccctgcagagctggttttc
acagtcccttgctcagcctccacctgatattctccttatttctttcatat
tcactttaggtcttggtcctttacagctaagggccttttaggtaacattt
taaagtaaaatggcagaaaaa
cggaattttctggaactctgaaaccccactcctgggtgatttcggtctag
tctaaggaggtttacacctccggtagatagtcgaccctcaatgcctgggc
ttgactgaaggcatcatattatcctgttgaatctggaaatttacctgggg
aaaacgcaccgaataaacccctgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107319925_107320972
seq2: B6Ng01-204I15.b_41_1111 (reverse)

seq1  -----------TTTTTCTT--AAATG-TACCT-AAAGGCCCTT-GCTGTA  34
                 |||| |||  ||||| ||||| |||||||||| ||||||
seq2  TTTTTCTGCCATTTTACTTTAAAATGTTACCTAAAAGGCCCTTAGCTGTA  50

seq1  AAGAAC--AGA-CTAAAGTGAATATGAAAGAAATAAGGAGAATATCA-GT  80
      ||| ||  ||| ||||||||||||||||||||||||||||||||||| ||
seq2  AAGGACCAAGACCTAAAGTGAATATGAAAGAAATAAGGAGAATATCAGGT  100

seq1  GGAGGGCTGAGCAAGGGACTGTTGAAAACCAGCTCTGCA-GGAACAGGCT  129
      ||| ||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  GGA-GGCTGAGCAAGGGACTG-TGAAAACCAGCTCTGCAGGGAACAGGCT  148

seq1  GGCAGGCCCACACCCCATTAAAAAGAATCCCTTCCCC-ACAGACTGTGAG  178
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  GGCAGGCCCACACCCCATTAAAAAGAATCCCTCCCCCAACAGACTGTGAG  198

seq1  AT-GGCTGCATGCAAATCCCAGACACTCCTCACACAGCAAAGCCTTCCTG  227
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGCATGCAAATCCCAGACACTCCTCACACAGCAAAGCCTTCCTG  248

seq1  GAAACACACTGTTTAGTCTGAGATCACCCAAGCACAAATCAATTCCCGAG  277
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACACTGTTTAGTCTGAGATCACCCAAGCACAAATCAATTCCCGAG  298

seq1  GACCGGATGACTAAAGGGAACTCACTTAATTGTGTTCACTGTTCTATTTA  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGATGACTAAAGGGAACTCACTTAATTGTGTTCACTGTTCTATTTA  348

seq1  AATGGACAGAAGAGG-AAAGAAACTCTCTGTTCTTTGTAGCTTAGCACCA  376
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATGGACAGAAGAGGAAAAGAAACTCTCTGTTCTTTGTAGCTTAGCACCA  398

seq1  ACCCTC-AATTTTGCAGGCTGCACCCCTCAAACTGGTTAAAACCTCTTTC  425
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAAATTTTGCAGGCTGCACCCCTCAAACTGGTTAAAACCTCTTTC  448

seq1  ATTGGTGTTTTATTCCAACTGAACTTCGGAATTTGGGGAGAAATTTTTCT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTTTTATTCCAACTGAACTTCGGAATTTGGGGAGAAATTTTTCT  498

seq1  GGAAAATATTAATCTACATTATAATGCATAAATTATAGGAAAAATTACTT  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATTAATCTACATTATAATGCATAAATTATAGGAAAAATTACTT  548

seq1  TTAATGTATGATTTTTTTTCAAAATCATTCAGCAATCATTTCATACACAA  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTATGATTTTTTTTCAAAATCATTCAGCAATCATTTCATACACAA  598

seq1  AAGTAATGGGATAATAGCAGCAGTGGATGGGTGTTCTGCCAAACACATTC  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGGGATAATAGCAGCAGTGGATGGGTGTTCTGCCAAACACATTC  648

seq1  CTGGGGGTCTTTTTCTTCCTTTGTCATTAAACCTGTTTCTATGTTGTGTA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTCTTTTTCTTCCTTTGTCATTAAACCTGTTTCTATGTTGTGTA  698

seq1  TATCTGAGTATATGCCACATGTATGCAGGTGCCCACAGAGGCCAGAAGAG  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGTATATGCCACATGTATGCAGGTGCCCACAGAGGCCAGAAGAG  748

seq1  GGTTTCAGGTCCTCTGAAGCTAGAGTGACAGACTACTGTGAGCTTCCTGA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGGTCCTCTGAAGCTAGAGTGACAGACTACTGTGAGCTTCCTGA  798

seq1  CACCTGATGCAGGTGCTGGGGACTGAACTCTGGTCCCCTGTAAGAACATC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATGCAGGTGCTGGGGACTGAACTCTGGTCCCCTGTAAGAACATC  848

seq1  AAATGCTCCTAACTGCTGAGCCATCGCTCCAGTCCACAGCCCCTCCACCT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCCTAACTGCTGAGCCATCGCTCCAGTCCACAGCCCCTCCACCT  898

seq1  ATACAGCCAGAGCAGTATTTGCATAGGTACAAGGAGAATATGTCCTTTTT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCAGAGCAGTATTTGCATAGGTACAAGGAGAATATGTCCTTTTT  948

seq1  GCAAAGTGTCTAACTGAGTAAGTCAAATCCATAGGCATGATCACGCCAGA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGTCTAACTGAGTAAGTCAAATCCATAGGCATGATCACGCCAGA  998

seq1  TACCTCCTCTGATTGGGTGAAGCCAACCCAAAGTCCATACGCCACGCAGG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTCTGATTGGGTGAAGCCAACCCAAAGTCCATACGCCACGCAGG  1048

seq1  AAGACAGGGTCTGCAGTGAATTC  1048
      |||||||||||||||||||||||
seq2  AAGACAGGGTCTGCAGTGAATTC  1071

seq1: chr1_107140739_107140917
seq2: B6Ng01-204I15.g_61_234

seq1  GAATTCTCTGGAACAACTGAGACCCACACTCCTGGGCGACTTCCGGTCTA  50
      ||||| ||||||||  |||| |||| |||||||||| || || |||||||
seq2  GAATTTTCTGGAAC-TCTGAAACCC-CACTCCTGGGTGA-TTTCGGTCTA  47

seq1  GTCTAAGGAGGTTTACACCTCCGGTAGAAGAGTCGACCCTCAATGCCTGG  100
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  GTCTAAGGAGGTTTACACCTCCGGTAG-ATAGTCGACCCTCAATGCCTGG  96

seq1  GCTTGACTGAAGGCATCAGATGTATCCTGTTGAAGCTGGAAAGTCACCTG  150
      |||||||||||||||||| || |||||||||||| ||||||| | |||||
seq2  GCTTGACTGAAGGCATCATAT-TATCCTGTTGAATCTGGAAATTTACCTG  145

seq1  GGGAAAACGCACCGAAGAAACCCCTGTGT  179
      |||||||||||||||| ||||||||||||
seq2  GGGAAAACGCACCGAATAAACCCCTGTGT  174