BAC Information

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BAC

Clone NameB6Ng01-204L22
Chromosome1 (Build37)
Map Location 175,171,647 - 175,311,454
singlet/doubletdoublet
Overlap geneOlfr1403, Darc, Cadm3
Upstream geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204L22.bB6Ng01-204L22.g
ACCGA024604GA024605
length1,078762
definitionB6Ng01-204L22.b B6Ng01-204L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,310,398 - 175,311,454)(175,171,647 - 175,172,408)
sequence
gaattctacacacatataattaagaaaattaaactaagtgctatgaatta
aatctttgtgtccctaatgtcaatcatatgcggatggccccatatgtatg
tgtacccttagaaaaaagatgcagaagagtttttttttctctttgacctg
caaggtacactaagaagatcaccatcctcctaaaacacagctgaccaaga
ccaagccaggaccataatttcaggcttccagtttccaaacccatgagaaa
taagtgtctgatgttttggctactcagtctctggtgttctgctacagcag
cctgaaccaagacacgtcttccttcccaaaatactacaccccacaaaaag
cttcttctgactccagtatttctttccatggttcagcatttttcaagcca
ctcaaataccagggcagagaactgttatctcatttcttctcctttcttgc
ttctcaaaccactacccaacattctgtctcagggtcaagtgctgggctct
tttaaatcatctccagaggctagtaatcatcactaaactgaacttgaata
agttttcaaatttaaaaactttagtctttcaggatgcaaacacacggttc
actgtacacacagcaagcacatgcacaaccccccccccctgtgcatttct
tctcactcacacttgcaaggagtataataaatattaattattcaagttta
aaatatgaagctgaataaaaatactagtcaagtgccttactgtgttgtca
atactagtctaaaaaagacattatacaattcttaaacatattacaatgac
tatttctctgttctttttttagatttattttatttattcattcattccat
ttatgtatttatgaatgcatttattttatttattaatcatcattcattca
ttcattcattcattcattcattccatttattattatggaaagtaacactg
tatctgtccttcaggacactccagaagaggggagtcagatctcattaaca
gaattgtttgtgagccaccaatgttggttgctgggaattggaactcaagg
aacctccagaagtagcagtcagtgctct
gaattcttgcagataatgtcagagaaactttcaagtgggctggagggggt
tggaggatgtggggacaaggtgagttttcatttgaaaaagatttagatgc
catctcttagtttatgggctaggtctggaaagctgaagaggtgggtagac
acttgaggaaaaatgaatgcaaatgaaaagaaaaatagttttcataatct
gattaaaatacagttgtttctaccataatactctacataagattagttta
aattttttttcatcttgcaaaaacactaaaagcaatacttccttacgaaa
aacaactcaaattgtgcaaaacccatcattaagccattaacattttaatt
tcaacaaaataattgaacatctaagttaaatgttaaataaaaccaacaat
atatacagagatttatcatccccagtggttgataaaggaaagagataaga
taaaaatacataaaatccaaatggaaaatatgtgaattatttctcaggtc
agattatttgtcaaatcttgaccgagaagtaaaccttggagttgaatagc
cattattcaaggactctatacttagagtattccactgtataaggaagggt
tatattcagcaactattccttggtagaataatgtattatgctatgaaaat
tgtgtgtgaactttccactttgcgttatatcctttgtctgctaataaatg
agaactaacctgaatttcataatcatgcattgggtcatagttattactgc
agctttttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175310398_175311454
seq2: B6Ng01-204L22.b_43_1120 (reverse)

seq1  AGAGCACTGACTGCT-CTTCTGGAGGT--CCTGAGTT-CAATTCCCAGCA  46
      ||||||||||||||| |||||||||||  | |||||| ||||||||||||
seq2  AGAGCACTGACTGCTACTTCTGGAGGTTCCTTGAGTTCCAATTCCCAGCA  50

seq1  ACC-ACA-TGGTGGCTCACAACCA--TCTG-TAATGAGATCTGACT-CCC  90
      ||| ||| ||||||||||||| ||  |||| ||||||||||||||| |||
seq2  ACCAACATTGGTGGCTCACAAACAATTCTGTTAATGAGATCTGACTCCCC  100

seq1  TCTTCTGGAGTGT-CTGAA-GACAGATACAGTG-TAC-TTCCAT-ATAAT  135
      ||||||||||||| ||||| ||||||||||||| ||| |||||| |||||
seq2  TCTTCTGGAGTGTCCTGAAGGACAGATACAGTGTTACTTTCCATAATAAT  150

seq1  AAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGA--ATAAAT  183
      |||||   ||||||||||||||||||||||||||||||||||  || |||
seq2  AAATG---GAATGAATGAATGAATGAATGAATGAATGAATGATGATTAAT  197

seq1  AAAT-AAATAAATACATACATAAATACATAAAT-GAATGAATGAATAAAT  231
      |||| |||||||| ||| ||||||||||||||| ||||||||||||||||
seq2  AAATAAAATAAATGCATTCATAAATACATAAATGGAATGAATGAATAAAT  247

seq1  -AAATAAATCTAAAAAAAGAACAGAGAAATAGTCATTGTAATATGTTTAA  280
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATCTAAAAAAAGAACAGAGAAATAGTCATTGTAATATGTTTAA  297

seq1  GAATTGTATAATGTC-TTTTTAGACTAGTATTGAC-ACACAGT-AGGCAC  327
      ||||||||||||||| ||||||||||||||||||| ||||||| ||||||
seq2  GAATTGTATAATGTCTTTTTTAGACTAGTATTGACAACACAGTAAGGCAC  347

seq1  TTGACTAGTATTTTTATTCAGCTTCATATTTTAAACTTGAATAATTAATA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAGTATTTTTATTCAGCTTCATATTTTAAACTTGAATAATTAATA  397

seq1  TTTATTATACTCCTTGCAAGTGTGAGTGAGAAGAAATGCACAGGGGGGGG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATACTCCTTGCAAGTGTGAGTGAGAAGAAATGCACAGGGGGGGG  447

seq1  GGGTTGTGCATGTGCTTGCTGTGTGTACAGTG-ACCGTGTGTTTGCATCC  476
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGTTGTGCATGTGCTTGCTGTGTGTACAGTGAACCGTGTGTTTGCATCC  497

seq1  TGAAAGACTAAAGTTTTTAAATTTGAAAACTTATTCAAGTTCAGTTTAGT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTAAAGTTTTTAAATTTGAAAACTTATTCAAGTTCAGTTTAGT  547

seq1  GATGATTACTAGCCTCTGGAGATGATTTAAAAGAGCCCAGCACTTGACCC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTACTAGCCTCTGGAGATGATTTAAAAGAGCCCAGCACTTGACCC  597

seq1  TGAGACAGAATGTTGGGTAGTGGTTTGAGAAGCAAGAAAGGAGAAGAAAT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGAATGTTGGGTAGTGGTTTGAGAAGCAAGAAAGGAGAAGAAAT  647

seq1  GAGATAACAGTTCTCTGCCCTGGTATTTGAGTGGCTTGAAAAATGCTGAA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAACAGTTCTCTGCCCTGGTATTTGAGTGGCTTGAAAAATGCTGAA  697

seq1  CCATGGAAAGAAATACTGGAGTCAGAAGAAGCTTTTTGTGGGGTGTAGTA  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAAAGAAATACTGGAGTCAGAAGAAGCTTTTTGTGGGGTGTAGTA  747

seq1  TTTTGGGAAGGAAGACGTGTCTTGGTTCAGGCTGCTGTAGCAGAACACCA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGAAGGAAGACGTGTCTTGGTTCAGGCTGCTGTAGCAGAACACCA  797

seq1  GAGACTGAGTAGCCAAAACATCAGACACTTATTTCTCATGGGTTTGGAAA  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAGTAGCCAAAACATCAGACACTTATTTCTCATGGGTTTGGAAA  847

seq1  CTGGAAGCCTGAAATTATGGTCCTGGCTTGGTCTTGGTCAGCTGTGTTTT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCCTGAAATTATGGTCCTGGCTTGGTCTTGGTCAGCTGTGTTTT  897

seq1  AGGAGGATGGTGATCTTCTTAGTGTACCTTGCAGGTCAAAGAGAAAAAAA  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATGGTGATCTTCTTAGTGTACCTTGCAGGTCAAAGAGAAAAAAA  947

seq1  AACTCTTCTGCATCTTTTTTCTAAGGGTACACATACATATGGGGCCATCC  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTGCATCTTTTTTCTAAGGGTACACATACATATGGGGCCATCC  997

seq1  GCATATGATTGACATTAGGGACACAAAGATTTAATTCATAGCACTTAGTT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGATTGACATTAGGGACACAAAGATTTAATTCATAGCACTTAGTT  1047

seq1  TAATTTTCTTAATTATATGTGTGTAGAATTC  1057
      |||||||||||||||||||||||||||||||
seq2  TAATTTTCTTAATTATATGTGTGTAGAATTC  1078

seq1: chr1_175171647_175172408
seq2: B6Ng01-204L22.g_69_830

seq1  GAATTCTTGCAGATAATGTCAGAGAAACTTTCAAGTGGGCTGGAGGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGATAATGTCAGAGAAACTTTCAAGTGGGCTGGAGGGGGT  50

seq1  TGGAGGATGTGGGGACAAGGTGAGTTTTCATTTGAAAAAGATTTAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATGTGGGGACAAGGTGAGTTTTCATTTGAAAAAGATTTAGATGC  100

seq1  CATCTCTTAGTTTATGGGCTAGGTCTGGAAAGCTGAAGAGGTGGGTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTAGTTTATGGGCTAGGTCTGGAAAGCTGAAGAGGTGGGTAGAC  150

seq1  ACTTGAGGAAAAATGAATGCAAATGAAAAGAAAAATAGTTTTCATAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGAAAAATGAATGCAAATGAAAAGAAAAATAGTTTTCATAATCT  200

seq1  GATTAAAATACAGTTGTTTCTACCATAATACTCTACATAAGATTAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAATACAGTTGTTTCTACCATAATACTCTACATAAGATTAGTTTA  250

seq1  AATTTTTTTTCATCTTGCAAAAACACTAAAAGCAATACTTCCTTACGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTCATCTTGCAAAAACACTAAAAGCAATACTTCCTTACGAAA  300

seq1  AACAACTCAAATTGTGCAAAACCCATCATTAAGCCATTAACATTTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTCAAATTGTGCAAAACCCATCATTAAGCCATTAACATTTTAATT  350

seq1  TCAACAAAATAATTGAACATCTAAGTTAAATGTTAAATAAAACCAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAATAATTGAACATCTAAGTTAAATGTTAAATAAAACCAACAAT  400

seq1  ATATACAGAGATTTATCATCCCCAGTGGTTGATAAAGGAAAGAGATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGAGATTTATCATCCCCAGTGGTTGATAAAGGAAAGAGATAAGA  450

seq1  TAAAAATACATAAAATCCAAATGGAAAATATGTGAATTA-TTCTCAGGTC  499
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAAATACATAAAATCCAAATGGAAAATATGTGAATTATTTCTCAGGTC  500

seq1  AGATTA-TTGTCAAAACTTGACCGAGAAGTAAACCTTGGAG-TGAATAGC  547
      |||||| |||||||| ||||||||||||||||||||||||| ||||||||
seq2  AGATTATTTGTCAAATCTTGACCGAGAAGTAAACCTTGGAGTTGAATAGC  550

seq1  CATTATTCAAGGACTCTATACTTAGAGTATTCCACTGTATAAGGAAGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCAAGGACTCTATACTTAGAGTATTCCACTGTATAAGGAAGGGT  600

seq1  TATATTCAGCAACTATTCCTTGGTAGAATAATGTATTATGCTATGAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATATTCAGCAACTATTCCTTGGTAGAATAATGTATTATGCTATG-AAAA  649

seq1  TTGTGTGTGAACTTTCCACTTTGCGTTATTATCCTTTGTCTTGCTAATAA  697
      |||||||||||||||||||||||||||| ||||||||||| ||||||| |
seq2  TTGTGTGTGAACTTTCCACTTTGCGTTA-TATCCTTTGTC-TGCTAAT-A  696

seq1  AATGAGAACTAACCTGAATTTCATAAACATGCATTGGGTCATAG-TAATA  746
      |||||||||||||||||||||||||| ||||||||||||||||| || ||
seq2  AATGAGAACTAACCTGAATTTCATAATCATGCATTGGGTCATAGTTATTA  746

seq1  CTGCAGCTTTTTAAAA  762
      ||||||||||||||||
seq2  CTGCAGCTTTTTAAAA  762