BAC Information

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BAC

Clone NameB6Ng01-204M01
Chromosome1 (Build37)
Map Location 166,516,097 - 166,614,481
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204M01.bB6Ng01-204M01.g
ACCGA024610GA024611
length1,095738
definitionB6Ng01-204M01.b B6Ng01-204M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,613,401 - 166,614,481)(166,516,097 - 166,516,828)
sequence
gaattcacttcctcacttacggaggaagaggcagcaacccccatctcctt
ctctggaatactccttgttgagatcttccaaaatattggagcaaattaaa
cagaataaaatcatttcttattctcctttttgaaaaatatcacaatatct
ggtgtaaagattaatcctatctcccccaaccttggagaatatggccatgg
ttgggagtccatacaaggagagaaatgtcaatttcactcacatgcgctga
attacatgctagaaaattcagttcttttgaacaacagaaaaacgctttta
tatttaagcaagcatttgttcttgggaaacaaaatgttcagctctagtgg
ttgccacagcaactgcttgggctaaaaataccagatattccataagcaga
aaaagtatgtagtgagcaaggaagaggaaagaaaatgggaaatctcccag
aggaaggtcaatgacagaatccagactccaaagaccagggagagcatgta
tcttggggactgcttcttcccatggggcaatatgtttgatagaaacctac
cgcctctgcacccttcttttctatctgcccacaactttctcttccctcag
aatcacatatactaagtatgagtggtccacctctccaaaagcatccttgt
caacagtaagggcatatcgagcaagggtaggtagcatttgcaggaggatc
atcaaagataaaaacctcttcccattgttcctgcttttgagttgtctggt
tttttttaaggaatccttccagtgaaagaactgtttaggggctggggtga
cagtaatgtgcttatctaccaaccaagactaagtaccttgagttttcctt
tccctagaactcacatgaaagaaagaggggggaagcctgacagggtggct
tacgcttcctaatcccagtgctagtggggaggcagagacaggcagattgc
ctgtttagtacttgccaacaagccagcctgacctgtttggtgaacttcaa
gggccaatgagagtcttttgcctcacaaacaaatttcgaattaactgaag
gaactactatgagggtggtcctccagcttccatcaatgcatatgc
gaattcacacatcataagcacacagccctgcagacctggaagcgaagcca
gtcttggcctgagtccctggatggagttgttcaaatgcagaagcagtgat
gtccagaagagcaccagctcttacagatcaatgaagctcaggaacaaaag
gcctcagcgagctggtggtctgggaagagcatcatttgcacctttgtggc
tcttcctttgcagtggagaagagggagtgttgctgaagatgaggccaagc
agtgctttaaaagctcagattgttccaaggggcggggatgagggggaagg
agacagcatgggcagaggaagagaaaaaagagaaaggaggaacaggaaaa
gaaaggaggaagaagtctttagttccgctggcatctaaatttggtagatg
tttagacagccaataatttatttccaggcttgcaaaagcatttattctgc
cctgctgtcgacatgagatctcacacacatttcactgaagtggattagct
caccggggttgcattttaacccacgctcgttggcaacaccgttatctctg
tgtgggaggcacacaggggtagtaatttagttggaggagggtgacaagct
agcagacgtgcattgagactgtgcttgaatggcaagctcccatttcattt
tctttggttccttctttttttgaaccttccattgtatacttattttgtga
cagcgaaaaagcagaaaagtcgccccccaatttgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166613401_166614481
seq2: B6Ng01-204M01.b_46_1140 (reverse)

seq1  GCATATGCAT--GTGGAAGCTGGAGGACAACCTTCATGGTAGTTCC-TCA  47
      ||||||||||   ||||||||||||||| ||| |||| |||||||| |||
seq2  GCATATGCATTGATGGAAGCTGGAGGACCACCCTCATAGTAGTTCCTTCA  50

seq1  GTTAATTCGAATTTGTTTTGTGAGGC-AAAGACTCTCATTGG-CCTTG-A  94
      ||||||||||| ||  |||||||||| ||||||||||||||| ||||| |
seq2  GTTAATTCGAAATTTGTTTGTGAGGCAAAAGACTCTCATTGGCCCTTGAA  100

seq1  GTTCACCAAACAGGTCAGGCTGGCTTGTTGGCAAGTACT-AACAGGC-AT  142
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  GTTCACCAAACAGGTCAGGCTGGCTTGTTGGCAAGTACTAAACAGGCAAT  150

seq1  CTGCCTGTCTCTGCCTCCCCACTAGCACTGGGATTA-GAAGCGTAAGCCA  191
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGCCTGTCTCTGCCTCCCCACTAGCACTGGGATTAGGAAGCGTAAGCCA  200

seq1  CCCTGTCAGGCTT-CCCCCTCTTTCTTTCATGTGAGTTCTAGGGAA--GG  238
      ||||||||||||| ||||||||||||||||||||||||||||||||  | 
seq2  CCCTGTCAGGCTTCCCCCCTCTTTCTTTCATGTGAGTTCTAGGGAAAGGA  250

seq1  AAACTC-AGGTACTTAGTCTTGGTTGGTAGATAAGCACATTACTGTCACC  287
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGGTACTTAGTCTTGGTTGGTAGATAAGCACATTACTGTCACC  300

seq1  CCAGCCCCTAAACAGTTCTTTCACTGGAAGGATTCCTT-AAAAAAACCAG  336
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAGCCCCTAAACAGTTCTTTCACTGGAAGGATTCCTTAAAAAAAACCAG  350

seq1  ACAACTCAAAAGCAGGAACAATGGGAAGAGGTTTTTATCTTTGATGATCC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAAAAGCAGGAACAATGGGAAGAGGTTTTTATCTTTGATGATCC  400

seq1  TCCTGCAAATGCTACCTACCCTTGCTCGATATGCCCTTACTGTTGACAAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAATGCTACCTACCCTTGCTCGATATGCCCTTACTGTTGACAAG  450

seq1  GATGCTTTTGGAGAGGTGGACCACTCATACTTAGTATATGTGATTCTGAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTTGGAGAGGTGGACCACTCATACTTAGTATATGTGATTCTGAG  500

seq1  GGAAGAGAAAGTTGTGGGCAGATAGAAAAGAAGGGTGCAGAGGCGGTAGG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAAAGTTGTGGGCAGATAGAAAAGAAGGGTGCAGAGGCGGTAGG  550

seq1  TTTCTATCAAACATATTGCCCCATGGGAAGAAGCAGTCCCCAAGATACAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCAAACATATTGCCCCATGGGAAGAAGCAGTCCCCAAGATACAT  600

seq1  GCTCTCCCTGGTCTTTGGAGTCTGGATTCTGTCATTGACCTTCCTCTGGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTGGTCTTTGGAGTCTGGATTCTGTCATTGACCTTCCTCTGGG  650

seq1  AGATTTCCCATTTTCTTTCCTCTTCCTTGCTCACTACATACTTTTTCTGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCCATTTTCTTTCCTCTTCCTTGCTCACTACATACTTTTTCTGC  700

seq1  TTATGGAATATCTGGTATTTTTAGCCCAAGCAGTTGCTGTGGCAACCACT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAATATCTGGTATTTTTAGCCCAAGCAGTTGCTGTGGCAACCACT  750

seq1  AGAGCTGAACATTTTGTTTCCCAAGAACAAATGCTTGCTTAAATATAAAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAACATTTTGTTTCCCAAGAACAAATGCTTGCTTAAATATAAAA  800

seq1  GCGTTTTTCTGTTGTTCAAAAGAACTGAATTTTCTAGCATGTAATTCAGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTTTCTGTTGTTCAAAAGAACTGAATTTTCTAGCATGTAATTCAGC  850

seq1  GCATGTGAGTGAAATTGACATTTCTCTCCTTGTATGGACTCCCAACCATG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAGTGAAATTGACATTTCTCTCCTTGTATGGACTCCCAACCATG  900

seq1  GCCATATTCTCCAAGGTTGGGGGAGATAGGATTAATCTTTACACCAGATA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTCTCCAAGGTTGGGGGAGATAGGATTAATCTTTACACCAGATA  950

seq1  TTGTGATATTTTTCAAAAAGGAGAATAAGAAATGATTTTATTCTGTTTAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATATTTTTCAAAAAGGAGAATAAGAAATGATTTTATTCTGTTTAA  1000

seq1  TTTGCTCCAATATTTTGGAAGATCTCAACAAGGAGTATTCCAGAGAAGGA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCAATATTTTGGAAGATCTCAACAAGGAGTATTCCAGAGAAGGA  1050

seq1  GATGGGGGTTGCTGCCTCTTCCTCCGTAAGTGAGGAAGTGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGTTGCTGCCTCTTCCTCCGTAAGTGAGGAAGTGAATTC  1095

seq1: chr1_166516097_166516828
seq2: B6Ng01-204M01.g_63_800

seq1  GAATTCACACATCATAAGCACACAGCCCTGCAGACCTGGAAGCGAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATCATAAGCACACAGCCCTGCAGACCTGGAAGCGAAGCCA  50

seq1  GTCTTGGCCTGAGTCCCTGGATGGAGTTGTTCAAATGCAGAAGCAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGCCTGAGTCCCTGGATGGAGTTGTTCAAATGCAGAAGCAGTGAT  100

seq1  GTCCAGAAGAGCACCAGCTCTTACAGATCAATGAAGCTCAGGAACAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAAGAGCACCAGCTCTTACAGATCAATGAAGCTCAGGAACAAAAG  150

seq1  GCCTCAGCGAGCTGGTGGTCTGGGAAGAGCATCATTTGCACCTTTGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCGAGCTGGTGGTCTGGGAAGAGCATCATTTGCACCTTTGTGGC  200

seq1  TCTTCCTTTGCAGTGGAGAAGAGGGAGTGTTGCTGAAGATGAGGCCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTGCAGTGGAGAAGAGGGAGTGTTGCTGAAGATGAGGCCAAGC  250

seq1  AGTGCTTTAAAAGCTCAGATTGTTCCAAGGGGCGGGGATGAGGGGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTAAAAGCTCAGATTGTTCCAAGGGGCGGGGATGAGGGGGAAGG  300

seq1  AGACAGCATGGGCAGAGGAAGAGAAAAAAGAGAAAGGAGGAACAGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATGGGCAGAGGAAGAGAAAAAAGAGAAAGGAGGAACAGGAAAA  350

seq1  GAAAGGAGGAAGAAGTCTTTAGTTCCGCTGGCATCTAAATTTGGTAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGAAGAAGTCTTTAGTTCCGCTGGCATCTAAATTTGGTAGATG  400

seq1  TTTAGACAGCCAATAATTTATTTCCAGGCTTGCAAAAGCATTTATTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACAGCCAATAATTTATTTCCAGGCTTGCAAAAGCATTTATTCTGC  450

seq1  CCTGCTGTCGACATGAGATCTCACACACATTTCACTGAAGTGGATTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTCGACATGAGATCTCACACACATTTCACTGAAGTGGATTAGCT  500

seq1  CACCGGGGTTGCATTTTAACCCACGCTCGTTGGCAACACCGTTATCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGGGTTGCATTTTAACCCACGCTCGTTGGCAACACCGTTATCTCTG  550

seq1  TGTGGGAGGCACACAGGGGTAGTAATTTAGTTGGAGGAGGGTGACAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGGCACACAGGGGTAGTAATTTAGTTGGAGGAGGGTGACAAGCT  600

seq1  AGCAGACGTGCATTGAGACTGTGCTTGAATGGCAAGCTCCCATTTCA-TT  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCAGACGTGCATTGAGACTGTGCTTGAATGGCAAGCTCCCATTTCATTT  650

seq1  TCTTTGGTTCCTTCTTTTTTTGAACCTT-CATTGTATACTTA-TTTGTGA  697
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  TCTTTGGTTCCTTCTTTTTTTGAACCTTCCATTGTATACTTATTTTGTGA  700

seq1  CAGCGAAAAAGCAG-AAAGTCGCCCCC--AATTGCTCT  732
      |||||||||||||| ||||||||||||  | |||||||
seq2  CAGCGAAAAAGCAGAAAAGTCGCCCCCCAATTTGCTCT  738