BAC Information

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BAC

Clone NameB6Ng01-204M03
Chromosome1 (Build37)
Map Location 50,658,608 - 50,659,728
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204M03.bB6Ng01-204M03.g
ACCGA024614GA024615
length1,1941,127
definitionB6Ng01-204M03.b B6Ng01-204M03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctctgtatttgtggtaaaaaagaaaatcaggtaaacaaagaatg
ataacaaattaatgagcagttaataaactaatcaaccaatgggtcttttg
cagtctagatttcctttatcatttttgttactgagatcaggacttataat
aataattgatttgaatggttgatttttgacaatatacttacatgaacagg
atagggaaagttttgatttctcaggacatattctgaacagagtgatctaa
tgaaaaggtaccattggacattactttctgggagaatgttaaatagtcca
actttatgtcaacattttgtacaacaaccattagaaataatttgtaggca
aatttttatttatcatttacataaatgacacatttatcataaattaccag
tctaccatttatcattacattgataatgttttgttggctgattctgatga
agatgttttagccatgctgggggatacagattgctccacaaaaaaataca
aagagatttacttagcgctttgggttataaaatcaatcaaaaaaattcaa
ccaaaaaatgtacagattcatagggaccaaatgcaaattattaccaatgt
tcaaaaattaatgggagattttaactggctgaggcctataattgaattaa
gtatttattagttaagcaatttttttccaaaccttacaaggaaagtcaaa
tttaaacattaaaatgatatccaacagctgaagtagaaaaaaagttaact
cttatagaacaaagatgcatatgtggatcaaatttgtcctaaacttgatt
gtactttcgttgttttgccttgaactcattctcctactagactcattata
caaagcgaagatagtattatagaatggatttcattagcttatgaacaaag
taaaaattgaaaggcatatgtagaaaagatttacaaatttaattataaaa
gttagagtaagactatatcaattgtcaggaacagatctgggtcaaatata
atacctcctcataatgtgagactatgtcattacagtgatcaattaaagtt
ggcaaagagcttgaattatcctacttggggaaaattcataccaaatattc
ttgaaaattccaactgttatcagtctataaaggaactattccatctcaac
atatggtagaacccgatccgaagtgtgccaaatacttcgcgtga
gaattcaaattatattttattcaattaccttttttcctgcatatatatat
atataattatataaattgttaatacttaaattactatacaaatttaacaa
tcagcattaattatactttaatatacttttcttaattcttttatacatag
tatattatagagatacacatttcttgaccaaaaagtgatagcctatgctt
aaaccttcaacaataataatagatagtatataacaaatagtctttaatac
atgcttatacatttgaactccatgtaatattcatgaactaagttgaaata
tagaaatatttttggggaaaactgtgaacagaataaactgtatgcaaaaa
aatctgttttcagtgaagaaaagaagtactgcttataggaaaagcacagg
attaaataagtaagcacaccttattgctgttgttattgagagtaaggtaa
taccgagcaaagagaacatggtgagaacatggtaagagtaatttctctga
agagaaatccaaaaagcctaaactattaaagtgtgtacttagttttcaac
ttctcctaatctgtacttcagatttaaataagccacaagtttgccattaa
cagaagataacactgggcaaaatagaaactcaagactcttgtaaaaggta
acacttttgagaggtgacatgcaccaatattggattaacattcttaataa
ctgtaaaaaccaagaatcattaccatgcagattttgtcagtcttggttct
gatgagaataagaaacaataaatgcatctctacagagctttgccctctat
tggtgcctgcttacaaaagacaggagatggatggattctaagcccattca
aaaagccatgagggctctgtgtaactaatctctcaagccatttttggtga
ataagcaattgctactgacattcttcaaaatgagttctcaaaacattttt
ttttttttagaaaaaatttgcccagggtacatgaaattaaacctttttaa
aattatgagcctatgatgatgaaaattagctggaaattactaatccaaga
gtgagatccacaaaaaaagcagatattggaatttatcggatctggattta
ttaataggagcatcctcagtattgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50658608_50659728
seq2: B6Ng01-204M03.g_63_1189 (reverse)

seq1  TTTCAAATATACTGAAGATGCTCCTATT-ATAAAT-CAGATCCGATAAAT  48
      |||||   ||||||| |||||||||||| |||||| ||||||||||||||
seq2  TTTCA---ATACTGAGGATGCTCCTATTAATAAATCCAGATCCGATAAAT  47

seq1  T-CAATATCTGCTTTTTTTGTGGATCTCACTCTTTGGTTAGTAATTT-CA  96
      | |||||||||||||||||||||||||||||||| | |||||||||| ||
seq2  TCCAATATCTGCTTTTTTTGTGGATCTCACTCTTGGATTAGTAATTTCCA  97

seq1  GCTAATTTTCATCCATCATAGGCTCCATAATTTT-AAAAGGTTTAATTTC  145
      |||||||||||| ||||||||||| ||||||||| |||||||||||||||
seq2  GCTAATTTTCAT-CATCATAGGCT-CATAATTTTAAAAAGGTTTAATTTC  145

seq1  ATGTACC--TGGCAAA-TTTTTCT---AAAAAAAAAATGTTTTGAGAACT  189
      |||||||   |||||| |||||||   |||||||||||||||||||||||
seq2  ATGTACCCTGGGCAAATTTTTTCTAAAAAAAAAAAAATGTTTTGAGAACT  195

seq1  CATTTTGAAGAATGTCAGTAGCAATTGCTTATTCACCAAAAATGGCTTGA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAGAATGTCAGTAGCAATTGCTTATTCACCAAAAATGGCTTGA  245

seq1  GAGATTAGTTACACAGAGCCCTCATGGCTTTTTGAATGGGCTTAGAATCC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAGTTACACAGAGCCCTCATGGCTTTTTGAATGGGCTTAGAATCC  295

seq1  ATCCATCTCCTGTCTTTTGTAAGCAGGCACCAATAGAGGGCAAAGCTCTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTCCTGTCTTTTGTAAGCAGGCACCAATAGAGGGCAAAGCTCTG  345

seq1  TAGAGATGCATTTATTGTTTCTTATTCTCATCAGAACCAAGACTGACAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGCATTTATTGTTTCTTATTCTCATCAGAACCAAGACTGACAAA  395

seq1  ATCTGCATGGTAATGATTCTTGGTTTTTACAGTTATTAAGAATGTTAATC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGGTAATGATTCTTGGTTTTTACAGTTATTAAGAATGTTAATC  445

seq1  CAATATTGGTGCATGTCACCTCTCAAAAGTGTTACCTTTTACAAGAGTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTGGTGCATGTCACCTCTCAAAAGTGTTACCTTTTACAAGAGTCT  495

seq1  TGAGTTTCTATTTTGCCCAGTGTTATCTTCTGTTAATGGCAAACTTGTGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCTATTTTGCCCAGTGTTATCTTCTGTTAATGGCAAACTTGTGG  545

seq1  CTTATTTAAATCTGAAGTACAGATTAGGAGAAGTTGAAAACTAAGTACAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAAATCTGAAGTACAGATTAGGAGAAGTTGAAAACTAAGTACAC  595

seq1  ACTTTAATAGTTTAGGCTTTTTGGATTTCTCTTCAGAGAAATTACTCTTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATAGTTTAGGCTTTTTGGATTTCTCTTCAGAGAAATTACTCTTA  645

seq1  CCATGTTCTCACCATGTTCTCTTTGCTCGGTATTACCTTACTCTCAATAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTCACCATGTTCTCTTTGCTCGGTATTACCTTACTCTCAATAA  695

seq1  CAACAGCAATAAGGTGTGCTTACTTATTTAATCCTGTGCTTTTCCTATAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAATAAGGTGTGCTTACTTATTTAATCCTGTGCTTTTCCTATAA  745

seq1  GCAGTACTTCTTTTCTTCACTGAAAACAGATTTTTTTGCATACAGTTTAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACTTCTTTTCTTCACTGAAAACAGATTTTTTTGCATACAGTTTAT  795

seq1  TCTGTTCACAGTTTTCCCCAAAAATATTTCTATATTTCAACTTAGTTCAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCACAGTTTTCCCCAAAAATATTTCTATATTTCAACTTAGTTCAT  845

seq1  GAATATTACATGGAGTTCAAATGTATAAGCATGTATTAAAGACTATTTGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTACATGGAGTTCAAATGTATAAGCATGTATTAAAGACTATTTGT  895

seq1  TATATACTATCTATTATTATTGTTGAAGGTTTAAGCATAGGCTATCACTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTATCTATTATTATTGTTGAAGGTTTAAGCATAGGCTATCACTT  945

seq1  TTTGGTCAAGAAATGTGTATCTCTATAATATACTATGTATAAAAGAATTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCAAGAAATGTGTATCTCTATAATATACTATGTATAAAAGAATTA  995

seq1  AGAAAAGTATATTAAAGTATAATTAATGCTGATTGTTAAATTTGTATAGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTATATTAAAGTATAATTAATGCTGATTGTTAAATTTGTATAGT  1045

seq1  AATTTAAGTATTAACAATTTATATAATTATATATATATATATGCAGGAAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTATTAACAATTTATATAATTATATATATATATATGCAGGAAA  1095

seq1  AAAGGTAATTGAATAAAATATAATTTGAATTC  1121
      ||||||||||||||||||||||||||||||||
seq2  AAAGGTAATTGAATAAAATATAATTTGAATTC  1127