BAC Information

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BAC

Clone NameB6Ng01-204N02
Chromosome1 (Build37)
Map Location 37,067,572 - 37,229,608
singlet/doubletdoublet
Overlap geneA230074B11Rik, 4921511C04Rik
Upstream geneEG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053
Downstream geneCnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204N02.bB6Ng01-204N02.g
ACCGA024656GA024657
length6631,045
definitionB6Ng01-204N02.b B6Ng01-204N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,067,572 - 37,068,233)(37,228,577 - 37,229,608)
sequence
gaattcatgaggacgagactgttcagctccttggcgtttacagcccacca
caggcacatgactctcactcttaagttctaatttctcccatgcttggatc
tgtgtctcaatttctagaatctagggagtcctcttgccactgagtgctga
gccctctgttcttatcttatgtgtatctgaaagcattccctgctctcaac
agacttctataaagttctttttttccccccttcccttttccctcttgctc
tggccccgctctctcaggcccccttatataaagttcttataacacaatac
agcattctgagaaactacgcaattgtcactgtggagatgactcaggggtt
caaatgcttgctgggcttgcatgaggaccaaagtttggttctgattacaa
cagtgagaagtattcggggacattccttatgtaggttctccagaacctac
ataaagatccagacaggccttgtagcctgcctgtgatctcagcagcaagg
agatggggatggatccctggggcaatctggccggttggactagccaaatc
agcagtcgctgggccacagagataaataaagtggagaacaattgaagaag
ataccagatatcaccctttggcctccatacgcctgtaggcaatcgtgcct
gtgtgagcgtgtg
gaattcaatccacagttagcatctctgatggataagtgtgaaaacacagg
gtttatttagaaacacagtggcccgggccgcacagaaacgaaacacgtgg
gttatgcctgggttatccttagtcctcactccgcctgcctgggaaatcag
cctactagaatggaccaggctttcaaagttctggaagaaaattccaagtt
ggaattctaagtcccagcaaactactgaccaaatcaaagggcagattgaa
cagaaaatcacctccttaagtagaaatgttcccctccagtacatcttgcc
ttaggaagctacttggaaatgtattccagcaaaatgagggcatgaagcaa
gaaagaacaacacaaagaatctaggatgcagattcactccaagagatcag
gagaaatctccaggggacagatgtgtatggtcagaccagcaggaagtctt
agggggtggagggtaaggacacaggaatcctgaaaatacatacatctatg
catacatacacacgtaaaattgtgcacacaaatctaatgcatacaaaagt
aataatttaaatacagacaaacttgtagcacaaccttacatagaaagaca
caaaggttaaagaaatcattttctcttgatcctattagcaatttttagtt
ttctgactataagactttcaaaggtgcccacgtgctcctaacctatggct
tatcatggcactggacaatataattataacaatgcaggtgctactttgtg
ggtttaaaagaattgcaatgaaacttttggacgcgtaccccactaacaca
gtgttttaaagacagcttttagacgctggacttgcaagcaaaaaacaaaa
gccctggcacaaagatgaccaccatgtggagtcaggaagtcaagaaaagt
ctgatgcgtccagaaaacacagggcttcagcccaggaaataaaaaaaaaa
aaaatcccctaaatgcagcaaggagaagcgggatgatgagcttgtttact
ctgagtgaaatgaaagaatatggattttgattactataataattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37067572_37068233
seq2: B6Ng01-204N02.b_35_697

seq1  GAATTCATGAGGACGAGACTGTTCAGCTCCTTGG-GTTTACAGCCCACCA  49
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAATTCATGAGGACGAGACTGTTCAGCTCCTTGGCGTTTACAGCCCACCA  50

seq1  CAGGCACATGACTCTCACTCTTAAGTTCTAATTTCTCCCATGCTTGGATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACATGACTCTCACTCTTAAGTTCTAATTTCTCCCATGCTTGGATC  100

seq1  TGTGTCTCAATTTCTAGAATCTAGGGAGTCCTCTTGCCACTGAGTGCTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAATTTCTAGAATCTAGGGAGTCCTCTTGCCACTGAGTGCTGA  150

seq1  GCCCTCTGTTCTTATCTTATGTGTATCTGAAAGCATTCCCTGCTCTCAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGTTCTTATCTTATGTGTATCTGAAAGCATTCCCTGCTCTCAAC  200

seq1  AGACTTCTATAAAGTTCTTTTTTTCCCCCCTTCCCTTTTCCCTCTTGCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTATAAAGTTCTTTTTTTCCCCCCTTCCCTTTTCCCTCTTGCTC  250

seq1  TGGCCCCGCTCTCTCAGGCCCCCTTATATAAAGTTCTTATAACACAATAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCGCTCTCTCAGGCCCCCTTATATAAAGTTCTTATAACACAATAC  300

seq1  AGCATTCTGAGAAACTACGCAATTGTCACTGTGGAGATGACTCAGGGGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTGAGAAACTACGCAATTGTCACTGTGGAGATGACTCAGGGGTT  350

seq1  CAAATGCTTGCTGGGCTTGCATGAGGACCAAAGTTTGGTTCTGATTACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTGCTGGGCTTGCATGAGGACCAAAGTTTGGTTCTGATTACAA  400

seq1  CAGTGAGAAGTATTCGGGGACATTCCTTATGTAGGTTCTCCAGAACCTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAAGTATTCGGGGACATTCCTTATGTAGGTTCTCCAGAACCTAC  450

seq1  ATAAAGATCCAGACAGGCCTTGTAGCCTGCCTGTGATCTCAGCAGCAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATCCAGACAGGCCTTGTAGCCTGCCTGTGATCTCAGCAGCAAGG  500

seq1  AGATGGGGATGGATCCCTGGGGCAATCTGGCCGGTTGGACTAGCCAAATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGATGGATCCCTGGGGCAATCTGGCCGGTTGGACTAGCCAAATC  550

seq1  AGCAGTCGCTGGGCCACAGAGATAAATAAAGTGGAGAACAATTGAAGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCGCTGGGCCACAGAGATAAATAAAGTGGAGAACAATTGAAGAAG  600

seq1  ATACCAGATATCACCCTTTGGCCTCCATACGCCTGTAGGCAATCGTGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGATATCACCCTTTGGCCTCCATACGCCTGTAGGCAATCGTGCCT  650

seq1  GTGTGAGCGTGTG  662
      |||||||||||||
seq2  GTGTGAGCGTGTG  663

seq1: chr1_37228577_37229608
seq2: B6Ng01-204N02.g_68_1112 (reverse)

seq1  AAATTATTATAGT-ATC-AAATCAATA-TCTTTCATTTCACTCAGA-TAA  46
      ||||||||||||| ||| ||||| ||| |||||||||||||||||| |||
seq2  AAATTATTATAGTAATCAAAATCCATATTCTTTCATTTCACTCAGAGTAA  50

seq1  --CAGCTCATCAT-CCGCTTCTCCTGCTTGCATTTTGTG--ATTTTTTTT  91
         |||||||||| |||||||||||   ||||||| | |   ||||||||
seq2  ACAAGCTCATCATCCCGCTTCTCCTTGCTGCATTTAGGGGATTTTTTTTT  100

seq1  TTTTTATTTCCTGGGCTGAAG-CCTGTG-TTTCTGGACGCATCAGACTTT  139
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TTTTTATTTCCTGGGCTGAAGCCCTGTGTTTTCTGGACGCATCAGACTTT  150

seq1  TCTTGACTTCCTGACTCCACATGGTGGTCATCTTTGTGCCAGGGC-TTTG  188
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTGACTTCCTGACTCCACATGGTGGTCATCTTTGTGCCAGGGCTTTTG  200

seq1  TTTTTTGCTTGCAAGTCCAGCGTCTAAAAGCTGTCTTTAAAACACTGTGT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTTGCAAGTCCAGCGTCTAAAAGCTGTCTTTAAAACACTGTGT  250

seq1  TAGTGGGGTACGCGTCC-AAAGTTTCATTGCAATTCTTTTAAACCCACAA  287
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGTGGGGTACGCGTCCAAAAGTTTCATTGCAATTCTTTTAAACCCACAA  300

seq1  AGTAGCACCTGCATTGTTATAATTATATTGTCCAGTGCCATGATAAGCCA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACCTGCATTGTTATAATTATATTGTCCAGTGCCATGATAAGCCA  350

seq1  TAGGTTAGGAGCACGTGGGCACCTTTGAAAGTCTTATAGTCAGAAAACTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGGAGCACGTGGGCACCTTTGAAAGTCTTATAGTCAGAAAACTA  400

seq1  AAAATTGCTAATAGGATCAAGAGAAAATGATTTCTTTAACCTTTGTGTCT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCTAATAGGATCAAGAGAAAATGATTTCTTTAACCTTTGTGTCT  450

seq1  TTCTATGTAAGGTTGTGCTACAAGTTTGTCTGTATTTAAATTATTACTTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTAAGGTTGTGCTACAAGTTTGTCTGTATTTAAATTATTACTTT  500

seq1  TGTATGCATTAGATTTGTGTGCACAATTTTACGTGTGTATGTATGCATAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCATTAGATTTGTGTGCACAATTTTACGTGTGTATGTATGCATAG  550

seq1  ATGTATGTATTTTCAGGATTCCTGTGTCCTTACCCTCCACCCCCTAAGAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATTTTCAGGATTCCTGTGTCCTTACCCTCCACCCCCTAAGAC  600

seq1  TTCCTGCTGGTCTGACCATACACATCTGTCCCCTGGAGATTTCTCCTGAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTGGTCTGACCATACACATCTGTCCCCTGGAGATTTCTCCTGAT  650

seq1  CTCTTGGAGTGAATCTGCATCCTAGATTCTTTGTGTTGTTCTTTCTTGCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGAGTGAATCTGCATCCTAGATTCTTTGTGTTGTTCTTTCTTGCT  700

seq1  TCATGCCCTCATTTTGCTGGAATACATTTCCAAGTAGCTTCCTAAGGCAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCCTCATTTTGCTGGAATACATTTCCAAGTAGCTTCCTAAGGCAA  750

seq1  GATGTACTGGAGGGGAACATTTCTACTTAAGGAGGTGATTTTCTGTTCAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTGGAGGGGAACATTTCTACTTAAGGAGGTGATTTTCTGTTCAA  800

seq1  TCTGCCCTTTGATTTGGTCAGTAGTTTGCTGGGACTTAGAATTCCAACTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTTGATTTGGTCAGTAGTTTGCTGGGACTTAGAATTCCAACTT  850

seq1  GGAATTTTCTTCCAGAACTTTGAAAGCCTGGTCCATTCTAGTAGGCTGAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTCTTCCAGAACTTTGAAAGCCTGGTCCATTCTAGTAGGCTGAT  900

seq1  TTCCCAGGCAGGCGGAGTGAGGACTAAGGATAACCCAGGCATAACCCACG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGCAGGCGGAGTGAGGACTAAGGATAACCCAGGCATAACCCACG  950

seq1  TGTTTCGTTTCTGTGCGGCCCGGGCCACTGTGTTTCTAAATAAACCCTGT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCGTTTCTGTGCGGCCCGGGCCACTGTGTTTCTAAATAAACCCTGT  1000

seq1  GTTTTCACACTTATCCATCAGAGATGCTAACTGTGGATTGAATTC  1032
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACACTTATCCATCAGAGATGCTAACTGTGGATTGAATTC  1045