BAC Information

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BAC

Clone NameB6Ng01-205B18
Chromosome1 (Build37)
Map Location 129,744,794 - 129,824,140
singlet/doubletdoublet
Overlap geneYsk4, Rab3gap1
Upstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2
Downstream geneZranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205B18.bB6Ng01-205B18.g
ACCGA024878GA024879
length1,1251,137
definitionB6Ng01-205B18.b B6Ng01-205B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,823,011 - 129,824,140)(129,744,794 - 129,745,921)
sequence
gaattccaacttacatagtctccagcctctggtgcaggaatgctattgtc
tattgaagtagttccatctaacggcttctcagagacagcatctgggaaca
agaactaggggagggataatcacattatacttaccttctttgatgatttt
aacgttctttttctcgtgaaagtcagttctcactataaagctctagctaa
cttagaactcaatatgtagaccaggatggcaaagcactcagagatccacc
tgctccacaggtactgggatgggattaaaaatataagctactacatctaa
ctattctgttggtgtttataacccatagaagatactgattgactttccag
tagatttgctgttaaaattatgagaatattcttactgtgatatccagctg
attctatattgtcataaaaaggaaaatattttcagcagttcagaaatttt
tcattcaaataagcacttgattctgtgaggtaaaacacagaagcaaaaat
ctcatcacaccgattcaatactcatcaatgttagtaaatcctgtatttta
aaaagtgtgaatccctttagagtcaaaactttaacaaatgatctaaaacc
acctctgtgtttctgagaatctgtgctaagatcatccacaggtttccatg
tatgaaatactgaaggcatggtggaaaatatcccctagaaatgaggagct
taaacctgcattgtgtagataaggtttcactgtaaagcccaggctagatt
taaactcatgagctttctatactagccttccaagtgctaggcttacacca
ccttaccaggtccttaggatttaaggagtcttctctacagagacttattt
ccttttattagtattgagacgattttctgatgttactaaccaatctctct
agcttccattggaacgtattacagaacatgttcagactttctagtatttt
aaccaatatttaacagacttataaaaccgacgtagctagaggtacaaagt
tacagtagcagttatatattttacaacaccattcagttctcatctttccc
gtatttatatgtaccagctaaagatctaaaagtcttgatcagaaaactgc
caagacactgccagcatcagtccaa
gaattcttcatagttttgagtggcagctgtacagtcagggttggatagaa
gactagatatgactctcattcatgataaacgaaaggcagataagggctgg
agagatggctcagcagttaagagtactgactgctcttccagaggtcctga
gttcaatttccagcaaccacatgatggctcacaaccatctgtaatggtat
ccaatgcactctactagtgtgaagacaactgcaatgtactcatataaaaa
aaaaatcttaaaaaaaaaaaagccaggtaagatggaataaaaatggaaga
ttgtaggctgcgggtatagctcagtggttggtactcatgcctagcatctg
taaggtggtccccagaaccaccacaacaaactattggagtgcaggtaact
atgatttacctccttaaatgttgagactgaatctctataacggttggtgt
ggtggtgcacacctttattcccaacacttgggaggcaaaggcaggcagat
ctctgtttgaagccagcctggtctacactgagttgtagaccagccaggga
tacacagtgataacctacacactcaacacccaccaaaacaacaacaacga
caacaaacccaacaccaagaacaacaaaaccaactctctgatatgggtga
tttctgagaactgtatttttagactagggatctatatatatatttcttct
aaatccatataagcattgaagtcttctttttttttttttttgaaagagga
tctatgtagtccaggctgtccttgaggaccctgaatttctgattcgcttg
cctctacttcctaagttctggaataaaaggttgggccatgactcctggtt
taatgtggttctggggctcaactcttgagcctttcatgcatgctaagcaa
acattatcagttgaagcccacaaccgcagctcccaaaaatccaacacctg
aagtctttaagtagtttatatttagaaaatgaaactccattaagtattgt
ctattttatcatttttcatctatcatcaatcatctatttttgtctgcata
actgtcatctctatatatctaccgattctggctgttatcatctactcatc
agcccaatctaacagtctatctaccctagcatctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129823011_129824140
seq2: B6Ng01-205B18.b_44_1168 (reverse)

seq1  TTGGACCTGATGCTGGCCAGTGTCTTGCCAGTTTTCTGATCAAGACTTTT  50
      ||||| |||||||||| |||||||||| ||||||||||||||||||||||
seq2  TTGGA-CTGATGCTGG-CAGTGTCTTGGCAGTTTTCTGATCAAGACTTTT  48

seq1  AGATCTTTAGCTGGTACATTATAAATACGGGAAAGATGAGAACTGAATGG  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGATCTTTAGCTGGTACA-TATAAATACGGGAAAGATGAGAACTGAATGG  97

seq1  TGTTTGTAAATATATAACTGCTACTGTAACTTTGTACCTCTTAGCTACGT  150
      ||||   ||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTTGTAAAATATATAACTGCTACTGTAACTTTGTACCTC-TAGCTACGT  146

seq1  CGGTTTTTATAAGTCTGTTAAATATTGGTTAAAATACTAGAAAGTCTGAA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGG-TTTTATAAGTCTGTTAAATATTGGTTAAAATACTAGAAAGTCTGAA  195

seq1  CATGTTCTGTAATACGTTCCAATGGAAGCTAGAGAGATTGGTTAGTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTGTAATACGTTCCAATGGAAGCTAGAGAGATTGGTTAGTAACA  245

seq1  TCAGAAAATCGTCTCAATACTAATAAAAGGAAATAAGTCTCTGTAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATCGTCTCAATACTAATAAAAGGAAATAAGTCTCTGTAGAGAA  295

seq1  GACTCCTTAAATCCTAAGGACCTGGTAAGGTGGTGTAAGCCTAGCACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTAAATCCTAAGGACCTGGTAAGGTGGTGTAAGCCTAGCACTTG  345

seq1  GAAGGCTAGTATAGAAAGCTCATGAGTTTAAATCTAGCCTGGGCTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTAGTATAGAAAGCTCATGAGTTTAAATCTAGCCTGGGCTTTACA  395

seq1  GTGAAACCTTATCTACACAATGCAGGTTTAAGCTCCTCATTTCTAGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCTTATCTACACAATGCAGGTTTAAGCTCCTCATTTCTAGGGGA  445

seq1  TATTTTCCACCATGCCTTCAGTATTTCATACATGGAAACCTGTGGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCACCATGCCTTCAGTATTTCATACATGGAAACCTGTGGATGAT  495

seq1  CTTAGCACAGATTCTCAGAAACACAGAGGTGGTTTTAGATCATTTGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACAGATTCTCAGAAACACAGAGGTGGTTTTAGATCATTTGTTAA  545

seq1  AGTTTTGACTCTAAAGGGATTCACACTTTTTAAAATACAGGATTTACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGACTCTAAAGGGATTCACACTTTTTAAAATACAGGATTTACTAA  595

seq1  CATTGATGAGTATTGAATCGGTGTGATGAGATTTTTGCTTCTGTGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGAGTATTGAATCGGTGTGATGAGATTTTTGCTTCTGTGTTTTA  645

seq1  CCTCACAGAATCAAGTGCTTATTTGAATGAAAAATTTCTGAACTGCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGAATCAAGTGCTTATTTGAATGAAAAATTTCTGAACTGCTGAA  695

seq1  AATATTTTCCTTTTTATGACAATATAGAATCAGCTGGATATCACAGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCCTTTTTATGACAATATAGAATCAGCTGGATATCACAGTAAG  745

seq1  AATATTCTCATAATTTTAACAGCAAATCTACTGGAAAGTCAATCAGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTCATAATTTTAACAGCAAATCTACTGGAAAGTCAATCAGTATC  795

seq1  TTCTATGGGTTATAAACACCAACAGAATAGTTAGATGTAGTAGCTTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGGTTATAAACACCAACAGAATAGTTAGATGTAGTAGCTTATAT  845

seq1  TTTTAATCCCATCCCAGTACCTGTGGAGCAGGTGGATCTCTGAGTGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCCATCCCAGTACCTGTGGAGCAGGTGGATCTCTGAGTGCTTT  895

seq1  GCCATCCTGGTCTACATATTGAGTTCTAAGTTAGCTAGAGCTTTATAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTGGTCTACATATTGAGTTCTAAGTTAGCTAGAGCTTTATAGTG  945

seq1  AGAACTGACTTTCACGAGAAAAAGAACGTTAAAATCATCAAAGAAGGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGACTTTCACGAGAAAAAGAACGTTAAAATCATCAAAGAAGGTAA  995

seq1  GTATAATGTGATTATCCCTCCCCTAGTTCTTGTTCCCAGATGCTGTCTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATGTGATTATCCCTCCCCTAGTTCTTGTTCCCAGATGCTGTCTCT  1045

seq1  GAGAAGCCGTTAGATGGAACTACTTCAATAGACAATAGCATTCCTGCACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCGTTAGATGGAACTACTTCAATAGACAATAGCATTCCTGCACC  1095

seq1  AGAGGCTGGAGACTATGTAAGTTGGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  AGAGGCTGGAGACTATGTAAGTTGGAATTC  1125

seq1: chr1_129744794_129745921
seq2: B6Ng01-205B18.g_67_1203

seq1  GAATTCTTCATAGTTTTGAGTGGCAGCTGTACAGTCAGGGTTGGATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATAGTTTTGAGTGGCAGCTGTACAGTCAGGGTTGGATAGAA  50

seq1  GACTAGATATGACTCTCATTCATGATAAACGAAAGGCAGATAAGGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGATATGACTCTCATTCATGATAAACGAAAGGCAGATAAGGGCTGG  100

seq1  AGAGATGGCTCAGCAGTTAAGAGTACTGACTGCTCTTCCAGAGGTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCAGCAGTTAAGAGTACTGACTGCTCTTCCAGAGGTCCTGA  150

seq1  GTTCAATTTCCAGCAACCACATGATGGCTCACAACCATCTGTAATGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTTCCAGCAACCACATGATGGCTCACAACCATCTGTAATGGTAT  200

seq1  CCAATGCACTCTACTAGTGTGAAGACAACTGCAATGTACTCATATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCACTCTACTAGTGTGAAGACAACTGCAATGTACTCATATAAAAA  250

seq1  AAAAATCTTAAAAAAAAAAAAGCCAGGTAAGATGGAATAAAAATGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTAAAAAAAAAAAAGCCAGGTAAGATGGAATAAAAATGGAAGA  300

seq1  TTGTAGGCTGCGGGTATAGCTCAGTGGTTGGTACTCATGCCTAGCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCTGCGGGTATAGCTCAGTGGTTGGTACTCATGCCTAGCATCTG  350

seq1  TAAGGTGGTCCCCAGAACCACCACAACAAACTATTGGAGTGCAGGTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGTCCCCAGAACCACCACAACAAACTATTGGAGTGCAGGTAACT  400

seq1  ATGATTTACCTCCTTAAATGTTGAGACTGAATCTCTATAACGGTTGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTACCTCCTTAAATGTTGAGACTGAATCTCTATAACGGTTGGTGT  450

seq1  GGTGGTGCACACCTTTATTCCCAACACTTGGGAGGCAAAGGCAGGCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCACACCTTTATTCCCAACACTTGGGAGGCAAAGGCAGGCAGAT  500

seq1  CTCTGTTTGAAGCCAGCCTGGTCTACACTGAGTTGTAGACCAGCCAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTGAAGCCAGCCTGGTCTACACTGAGTTGTAGACCAGCCAGGGA  550

seq1  TACACAGTGATAACCTACACACTCAACACCCACCAAAACAACAACAACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGATAACCTACACACTCAACACCCACCAAAACAACAACAACGA  600

seq1  CAACAAACCCAACACCAAGAACAACAAAACCAACTCTCTGATATGGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACCCAACACCAAGAACAACAAAACCAACTCTCTGATATGGGTGA  650

seq1  TTTCTGAGAACTGTATTTTTAGACTAGGGATCTATATATATATTTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGAACTGTATTTTTAGACTAGGGATCTATATATATATTTCTTCT  700

seq1  AAATCCATATAAGCATTGAAGTCTTCTTTTTTTTTTTTTTTGAAAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATATAAGCATTGAAGTCTTCTTTTTTTTTTTTTTTGAAAGAGGA  750

seq1  TCTATGTAGTCCAGGCTGTCCTTGAGGACCCTGAATTTCTGATTCGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAGTCCAGGCTGTCCTTGAGGACCCTGAATTTCTGATTCGCTTG  800

seq1  CCTCTACTTCCTAAGTTCTGGAATAAAAGGTTGGGCCATGACTCCTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTTCCTAAGTTCTGGAATAAAAGGTTGGGCCATGACTCCTGGTT  850

seq1  T-ATGTGGTTCTGGGGCTCAACTC-TGAGCC-TTCATGCATGCTAAGCAA  897
      | |||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  TAATGTGGTTCTGGGGCTCAACTCTTGAGCCTTTCATGCATGCTAAGCAA  900

seq1  ACATTATCAGTTGA--GCCACAACCGCAGCTCCCAAAAATCCAACA-CTG  944
      ||||||||||||||   ||||||||||||||||||||||||||||| |||
seq2  ACATTATCAGTTGAAGCCCACAACCGCAGCTCCCAAAAATCCAACACCTG  950

seq1  AAGTCTTAAAGTAGTTTATAATTTAGAAAATGAAACT-CATTAAGTATTG  993
      ||||||| ||||||||||| ||||||||||||||||| ||||||||||||
seq2  AAGTCTTTAAGTAGTTTAT-ATTTAGAAAATGAAACTCCATTAAGTATTG  999

seq1  TCTA-TTTATCATTTATCAATCTATCATCAATCATCTATTTTTGTCTGCA  1042
      |||| |||||||||| || |||||||||||||||||||||||||||||||
seq2  TCTATTTTATCATTTTTC-ATCTATCATCAATCATCTATTTTTGTCTGCA  1048

seq1  TAACTGTCATCTCTATATATCTACCTA-TCTGGCTGTTATCATCTACTCT  1091
      ||||||||||||||||||||||||| | ||||||||||||||||||||| 
seq2  TAACTGTCATCTCTATATATCTACCGATTCTGGCTGTTATCATCTACTC-  1097

seq1  ATCAG-CCAATCTACCA-TCTATCTA-CCTAACATCTACC  1128
      ||||| |||||||| || |||||||| |||| ||||||||
seq2  ATCAGCCCAATCTAACAGTCTATCTACCCTAGCATCTACC  1137