BAC Information

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BAC

Clone NameB6Ng01-205C20
Chromosome1 (Build37)
Map Location 17,424,366 - 17,510,954
singlet/doubletdoublet
Overlap genenone
Upstream geneUbe2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1
Downstream genePi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205C20.bB6Ng01-205C20.g
ACCGA024928GA024929
length7901,068
definitionB6Ng01-205C20.b B6Ng01-205C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,424,366 - 17,425,049)(17,509,890 - 17,510,954)
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaaatgcctctgg
tattacactatcactttgaataaaagctaagtcactgccgtacacaggaa
tttacggtcatctaggaagaaggaagtttgagacctaaggaggaaccaga
gtagatacttagaactatagatagctgagttacacccatacacacgtatt
tacaatggcctagggggaaggtagactatacaatagactaaaataggaac
tatggcaagggcacgaagcccttgaccctggcttctaagattaaggtgga
gctctttttgatcccagttgttaacaatgaattctatcccaggtgattcc
tgttagaccttctgtgtttgtattcctctgttttgtgtaagaatccagta
acctctttgtaccttgtgggtgtgtcacccaactttcctattttcttctg
tataaaaaatttgatgctcgatttgacaaattacattcagattctacagg
acctctcctgtgtgcatctgtctgccattccctccgatgctttgcccacc
tgccccagagacccgttccacgcagacaaagggatccagagggtctgcag
cagatgatgaatatggatgtcaaacatctgttcccctgcccattagactt
ttatcaagctcaggattatagccctaccagtgcatcaagaataaagggga
tttgaggaagaagttaaaagaaacttctgaaattaaaaggttttttttgt
tgttgttgttctgtttttggttttttttgggggggggttg

gaattcctttttattgtccttagtggtaggggtagaggtgagcctgctcc
accactcatttcctttctctacaccacacaggaaatgagtggtggagcca
gctttcccaagatgcctaggtgagggatggggtcagttccacacagccct
caggcaccagcccagaccacagacatgttccctgccttttgggtaacaga
tctctgctgctgcagggacatggactcaggcatggttctcagtggcagca
taggtcagaaccccaccgtggtcccacgtggcatcattggctacttacat
taagctgttccttattaccctcaagtgtgcagttctccctctctccattg
tgctcacacccttctgtttctcatttctccatcacttactcgctcctctt
agtagcaccttgagtctctgaatgactggggtcatctcaagcacagtctc
tggagtgctgagcctcgctcatgcattatggtactgggcagggtatcatc
tctggaatggtctgcccccaagtctatacaacactagactaatggttctc
tcatgctagttctctgtccaggcccatagtgctgaaggcttgctctttac
caggcctgcctgactggccccatgtgagggttctctgtctcctggtcact
ccagcccaggttcatggttccagatgaggttcatgtagtctccagttcac
tccccattcatgcctgcctggcaccagactgatggtcatctcaggcccac
tttttttcaaggaatattaggctactaatcagatgttcataggtcagaac
actgagcacagacatagtcttctgagctatgtgacacacacatgtgatac
agaagccacattctggaacacctctggaagcaggtcttcatatacttttt
atctacagaaccaatggtaagatgacatatgtacaaaggcagtccagcaa
tcatgccaaaaccagggatatctctgaggcaacaaacagtgtgggttaaa
ttataatcacattttcatgagacctgagttctaccttacacttgctgaaa
atctagatttaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17424366_17425049
seq2: B6Ng01-205C20.b_150_833

seq1  GTCATCTAGGAAGAAGGAAGTTTGAGACCTAAGGAGGAACCAGAGTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTAGGAAGAAGGAAGTTTGAGACCTAAGGAGGAACCAGAGTAGAT  50

seq1  ACTTAGAACTATAGATAGCTGAGTTACACCCATACACACGTATTTACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAACTATAGATAGCTGAGTTACACCCATACACACGTATTTACAAT  100

seq1  GGCCTAGGGGGAAGGTAGACTATACAATAGACTAAAATAGGAACTATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGGGGAAGGTAGACTATACAATAGACTAAAATAGGAACTATGGC  150

seq1  AAGGGCACGAAGCCCTTGACCCTGGCTTCTAAGATTAAGGTGGAGCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACGAAGCCCTTGACCCTGGCTTCTAAGATTAAGGTGGAGCTCTT  200

seq1  TTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGATTCCTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGATTCCTGTTAG  250

seq1  ACCTTCTGTGTTTGTATTCCTCTGTTTTGTGTAAGAATCCAGTAACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGTGTTTGTATTCCTCTGTTTTGTGTAAGAATCCAGTAACCTCT  300

seq1  TTGTACCTTGTGGGTGTGTCACCCAACTTTCCTATTTTCTTCTGTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTGTGGGTGTGTCACCCAACTTTCCTATTTTCTTCTGTATAAA  350

seq1  AAATTTGATGCTCGATTTGACAAATTACATTCAGATTCTACAGGACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATGCTCGATTTGACAAATTACATTCAGATTCTACAGGACCTCT  400

seq1  CCTGTGTGCATCTGTCTGCCATTCCCTCCGATGCTTTGCCCACCTGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGCATCTGTCTGCCATTCCCTCCGATGCTTTGCCCACCTGCCCC  450

seq1  AGAGACCCGTTCCACGCAGACAAAGGGATCCAGAGGGTCTGCAGCAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCGTTCCACGCAGACAAAGGGATCCAGAGGGTCTGCAGCAGATG  500

seq1  ATGAATATGGATGTCAAACATCTGTTCCCCTGCCCATTAGACTTTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGGATGTCAAACATCTGTTCCCCTGCCCATTAGACTTTTATCA  550

seq1  AGCTCAGGATTATAGCCCTACCAGTGCATCAAGAATAAAGGGGATTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGATTATAGCCCTACCAGTGCATCAAGAATAAAGGGGATTTGAG  600

seq1  GAAGAAGTTAAAAGAAACTTCTGAAATTAAAAGGTTTTTTTTGTTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTAAAAGAAACTTCTGAAATTAAAAGGTTTTTTTTGTTGTTGT  650

seq1  TGTTCTGTTTTTGGTTTTTTTTGGGGGGGGGTTG  684
      ||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTTTTGGTTTTTTTTGGGGGGGGGTTG  684


seq1: chr1_17509890_17510954
seq2: B6Ng01-205C20.g_65_1132 (reverse)

seq1  TTTTTTTTTAATCTAGGATTTTCAGCAAGTGTAAGTTAGAACTTCAGGTC  50
      |||||||| |||||| ||||||||||||||||||| |||||| |||||||
seq2  TTTTTTTTAAATCTA-GATTTTCAGCAAGTGTAAGGTAGAAC-TCAGGTC  48

seq1  TCATGAAAATGTGATTAT-ATTTAACCCACACTGTTTGTTGCCTCAGAGA  99
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATGAAAATGTGATTATAATTTAACCCACACTGTTTGTTGCCTCAGAGA  98

seq1  TATCCCTGGTTTT-GCATGATTGCTGGACTGCC-TTGTACATATTGTCAT  147
      ||||||||||||| ||||||||||||||||||| ||||||||| ||||||
seq2  TATCCCTGGTTTTGGCATGATTGCTGGACTGCCTTTGTACATA-TGTCAT  147

seq1  C-TACCATTGGTTCTGTAGATTAAAAGTATATGAAGACCTGCTTCCAGAG  196
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTACCATTGGTTCTGTAGATAAAAAGTATATGAAGACCTGCTTCCAGAG  197

seq1  GTGTTCCAG-ATGTGGCTTCTGTATCACATGTGTGTGTCACATAGCTCAG  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCAGAATGTGGCTTCTGTATCACATGTGTGTGTCACATAGCTCAG  247

seq1  -AGACTATGTCTGTGCTCAGTGTTCTGACCTATGAACATCTGATTAGTAG  294
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATGTCTGTGCTCAGTGTTCTGACCTATGAACATCTGATTAGTAG  297

seq1  CCTAATATTCCTTGAAAAAAAGTGGGCCTGAGATGACCATCAGTCTGGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATTCCTTGAAAAAAAGTGGGCCTGAGATGACCATCAGTCTGGTG  347

seq1  CCAGGCAGGCATGAATGGGGAGTGAACTGGAGACTACATGAACCTCATCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGCATGAATGGGGAGTGAACTGGAGACTACATGAACCTCATCT  397

seq1  GGAACCATGAACCTGGGCTGGAGTGACCAGGAGACAGAGAACCCTCACAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCATGAACCTGGGCTGGAGTGACCAGGAGACAGAGAACCCTCACAT  447

seq1  GGGGCCAGTCAGGCAGGCCTGGTAAAGAGCAAGCCTTCAGCACTATGGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAGTCAGGCAGGCCTGGTAAAGAGCAAGCCTTCAGCACTATGGGC  497

seq1  CTGGACAGAGAACTAGCATGAGAGAACCATTAGTCTAGTGTTGTATAGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGAGAACTAGCATGAGAGAACCATTAGTCTAGTGTTGTATAGAC  547

seq1  TTGGGGGCAGACCATTCCAGAGATGATACCCTGCCCAGTACCATAATGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCAGACCATTCCAGAGATGATACCCTGCCCAGTACCATAATGCA  597

seq1  TGAGCGAGGCTCAGCACTCCAGAGACTGTGCTTGAGATGACCCCAGTCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGAGGCTCAGCACTCCAGAGACTGTGCTTGAGATGACCCCAGTCAT  647

seq1  TCAGAGACTCAAGGTGCTACTAAGAGGAGCGAGTAAGTGATGGAGAAATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACTCAAGGTGCTACTAAGAGGAGCGAGTAAGTGATGGAGAAATG  697

seq1  AGAAACAGAAGGGTGTGAGCACAATGGAGAGAGGGAGAACTGCACACTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAAGGGTGTGAGCACAATGGAGAGAGGGAGAACTGCACACTTG  747

seq1  AGGGTAATAAGGAACAGCTTAATGTAAGTAGCCAATGATGCCACGTGGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAATAAGGAACAGCTTAATGTAAGTAGCCAATGATGCCACGTGGGA  797

seq1  CCACGGTGGGGTTCTGACCTATGCTGCCACTGAGAACCATGCCTGAGTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTGGGGTTCTGACCTATGCTGCCACTGAGAACCATGCCTGAGTCC  847

seq1  ATGTCCCTGCAGCAGCAGAGATCTGTTACCCAAAAGGCAGGGAACATGTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTGCAGCAGCAGAGATCTGTTACCCAAAAGGCAGGGAACATGTC  897

seq1  TGTGGTCTGGGCTGGTGCCTGAGGGCTGTGTGGAACTGACCCCATCCCTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTGGGCTGGTGCCTGAGGGCTGTGTGGAACTGACCCCATCCCTC  947

seq1  ACCTAGGCATCTTGGGAAAGCTGGCTCCACCACTCATTTCCTGTGTGGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGCATCTTGGGAAAGCTGGCTCCACCACTCATTTCCTGTGTGGTG  997

seq1  TAGAGAAAGGAAATGAGTGGTGGAGCAGGCTCACCTCTACCCCTACCACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGGAAATGAGTGGTGGAGCAGGCTCACCTCTACCCCTACCACT  1047

seq1  AAGGACAATAAAAAGGAATTC  1065
      |||||||||||||||||||||
seq2  AAGGACAATAAAAAGGAATTC  1068


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