BAC Information

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BAC

Clone NameB6Ng01-205G15
Chromosome1 (Build37)
Map Location 166,824,519 - 166,923,889
singlet/doubletdoublet
Overlap geneXcl1, 1700029M03Rik
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt
Downstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205G15.bB6Ng01-205G15.g
ACCGA025100GA025101
length1,001894
definitionB6Ng01-205G15.b B6Ng01-205G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,922,912 - 166,923,889)(166,824,519 - 166,825,409)
sequence
gaattcaggacaggaacaggacaggaactcatgcagggcaggatcctgga
ggcaggagctgatgcataggccatgggggaatgtggttactggcttgctt
cccctggcttgctcagcttgctttcttatagaacccaggactaacagccc
agggatggcaccacccacaatggacccttccaccctttatcactaattga
gaaaatgccttacagctggatctcatggaggcatttcctcaagggaggct
ccttcctctgtgataactccagcttgtgtcaacttggcacacaaacccag
ccagtacagatttttactaaggtttcactagatcagcacagctcattgac
tcattggctgcatagctgaattttattctagaggtcataagttcaaaatg
ataacagtagttcaaagttaatcacatggctggcctccctggtgccaaca
cccccttcttgagtcatcttttcagcaagggcttgggtgtggttcagggg
cctactgggaaaacttgaccttaaggcaagtctaagagtttataaggctc
tttcccagaaaccagtgagttaagatcaggtaaattttaaacaacagtgg
gaaataagagttttatcctcattttgtaggtgatacttagggtggctaat
tgacttgtataagtcacatgggcgtatagtgatgctgcagagccccaatc
ctgacctctgacctctcatttctatttctttccaatgccccaggatggat
ccccaacagtaagagtaacttcctgtcatcactgtcattgttaactgtca
actgtctctcagtagctgcatgtgactctatgaccatgactactgttctc
catggctatcgagggttcctcttcctgggggaggagcccagggatgctga
gtatgaaattggcagccttgtgattgggatgcccattctatgataggtac
tcaagctttgcggacattgaattgtgagcttcaaggtgatgatgcctcat
t
gaattcagagtttgatatgtgctttagggcactttttgttgggtcaatat
tttaaaatgagcaacagtgaggtccttttttagacaggaaatgtgagatc
taaagaattagagtgagaagatgcagtcacatcgacctccaaaagggaag
ggcattggatgcattgtatgtcctgatcttcatgtctgtgccaagctatg
tgccatatacacataatctgtgtctatgtttgaatgttgcaacctgacag
tttaaatttatctcataaaagtaagttaatataagaatactcatttttgt
gaataaccatcttgatgataagaaacaaaataatcttgttctggccactc
aaaaggtttgagaagcttcatcgtgtaataccaggttataggcactccaa
aatcctgtctgctgggtggtacttaggtactagagtcacaagtcataaat
tctctagaataataattctgtccctagttggggagaggggcaggggacgt
cctcttggagacagtggggaggaggaatgggatgaggaactatgggatgg
cagactgggagggaggcaatgactggactatgaaattatgaaagtattta
aaaaattcacatatattttctgaattgtatttagtactcatcatcaagaa
tatttattttttttaaaaattctgtctcatcttactttttaaaagatttc
attttaaaaaaaatattgttttgaaaggaatctttatccataattcttat
aaagccatacaaataagagtgggtaggttgtagatgtaaaagtaaatata
tgaatattttttatcatattcactgggagatataaaatattacataagca
tatgaaccaatcacatttgtatttgcgtgctaaatactggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166922912_166923889
seq2: B6Ng01-205G15.b_47_1025 (reverse)

seq1  GCTCAC-ATTCAATGTCCGCAAAGCTTGAGTACCTATCATAGAATGGGCA  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAATTCAATGTCCGCAAAGCTTGAGTACCTATCATAGAATGGGCA  50

seq1  TCCCAATCACAAGGCTGCCAATTTCATACTCAGCATCCCTGGGCTCCTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATCACAAGGCTGCCAATTTCATACTCAGCATCCCTGGGCTCCTCC  100

seq1  CCCAGGAAGAGGAACCCTCGATAGCCATGGAGAACAGTAGTCATGGTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGAGGAACCCTCGATAGCCATGGAGAACAGTAGTCATGGTCAT  150

seq1  AGAGTCACATGCAGCTACTGAGAGACAGTTGACAGTTAACAATGACAGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACATGCAGCTACTGAGAGACAGTTGACAGTTAACAATGACAGTG  200

seq1  ATGACAGGAAGTTACTCTTACTGTTGGGGATCCATCCTGGGGCATTGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGAAGTTACTCTTACTGTTGGGGATCCATCCTGGGGCATTGGAA  250

seq1  AGAAATAGAAATGAGAGGTCAGAGGTCAGGATTGGGGCTCTGCAGCATCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAAATGAGAGGTCAGAGGTCAGGATTGGGGCTCTGCAGCATCA  300

seq1  CTATACGCCCATGTGACTTATACAAGTCAATTAGCCACCCTAAGTATCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACGCCCATGTGACTTATACAAGTCAATTAGCCACCCTAAGTATCAC  350

seq1  CTACAAAATGAGGATAAAACTCTTATTTCCCACTGTTGTTTAAAATTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAATGAGGATAAAACTCTTATTTCCCACTGTTGTTTAAAATTTAC  400

seq1  CTGATCTTAACTCACTGGTTTCTGGGAAAGAGCCTTATAAACTCTTAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTAACTCACTGGTTTCTGGGAAAGAGCCTTATAAACTCTTAGAC  450

seq1  TTGCCTTAAGGTCAAGTTTTCCCAGTAGGCCCCTGAACCACACCCAAGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTAAGGTCAAGTTTTCCCAGTAGGCCCCTGAACCACACCCAAGCC  500

seq1  CTTGCTGAAAAGATGACTCAAGAAGGGGGTGTTGGCACCAGGGAGGCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGAAAAGATGACTCAAGAAGGGGGTGTTGGCACCAGGGAGGCCAG  550

seq1  CCATGTGATTAACTTTGAACTACTGTTATCATTTTGAACTTATGACCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGATTAACTTTGAACTACTGTTATCATTTTGAACTTATGACCTCT  600

seq1  AGAATAAAATTCAGCTATGCAGCCAATGAGTCAATGAGCTGTGCTGATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAATTCAGCTATGCAGCCAATGAGTCAATGAGCTGTGCTGATCT  650

seq1  AGTGAAACCTTAGTAAAAATCTGTACTGGCTGGGTTTGTGTGCCAAGTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACCTTAGTAAAAATCTGTACTGGCTGGGTTTGTGTGCCAAGTTG  700

seq1  ACACAAGCTGGAGTTATCACAGAGGAAGGAGCCTCCCTTGAGGAAATGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCTGGAGTTATCACAGAGGAAGGAGCCTCCCTTGAGGAAATGCC  750

seq1  TCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATAAAGGGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATAAAGGGTGG  800

seq1  AAGGGTCCATTGTGGGTGGTGCCATCCCTGGGCTGTTAGTCCTGGGTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCCATTGTGGGTGGTGCCATCCCTGGGCTGTTAGTCCTGGGTTCT  850

seq1  ATAAGAAAGCAAGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAACCACATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGCAAGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAACCACATT  900

seq1  CCCCCATGGCCTATGCATCAGCTCCTGCCTCCAGGATCCTGCCCTGCATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGGCCTATGCATCAGCTCCTGCCTCCAGGATCCTGCCCTGCATG  950

seq1  AGTTCCTGTCCTGTTCCTGTCCTGAATTC  978
      |||||||||||||||||||||||||||||
seq2  AGTTCCTGTCCTGTTCCTGTCCTGAATTC  979

seq1: chr1_166824519_166825409
seq2: B6Ng01-205G15.g_64_957

seq1  GAATTCAGAGTTTGATATGTGCTTTAGGGCACTTTTTGTTGGGTCAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTTGATATGTGCTTTAGGGCACTTTTTGTTGGGTCAATAT  50

seq1  TTTAAAATGAGCAACAGTGAGGTCCTTTTTTAGACAGGAAATGTGAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAGCAACAGTGAGGTCCTTTTTTAGACAGGAAATGTGAGATC  100

seq1  TAAAGAATTAGAGTGAGAAGATGCAGTCACATCGACCTCCAAAAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATTAGAGTGAGAAGATGCAGTCACATCGACCTCCAAAAGGGAAG  150

seq1  GGCATTGGATGCATTGTATGTCCTGATCTTCATGTCTGTGCCAAGCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGGATGCATTGTATGTCCTGATCTTCATGTCTGTGCCAAGCTATG  200

seq1  TGCCATATACACATAATCTGTGTCTATGTTTGAATGTTGCAACCTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATACACATAATCTGTGTCTATGTTTGAATGTTGCAACCTGACAG  250

seq1  TTTAAATTTATCTCATAAAAGTAAGTTAATATAAGAATACTCATTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTATCTCATAAAAGTAAGTTAATATAAGAATACTCATTTTTGT  300

seq1  GAATAACCATCTTGATGATAAGAAACAAAATAATCTTGTTCTGGCCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACCATCTTGATGATAAGAAACAAAATAATCTTGTTCTGGCCACTC  350

seq1  AAAAGGTTTGAGAAGCTTCATCGTGTAATACCAGGTTATAGGCACTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTGAGAAGCTTCATCGTGTAATACCAGGTTATAGGCACTCCAA  400

seq1  AATCCTGTCTGCTGGGTGGTACTTAGGTACTAGAGTCACAAGTCATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTCTGCTGGGTGGTACTTAGGTACTAGAGTCACAAGTCATAAAT  450

seq1  TCTCTAGAATAATAATTCTGTCCCTAGTTGGGGAGAGGGGCAGGGGACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAATAATAATTCTGTCCCTAGTTGGGGAGAGGGGCAGGGGACGT  500

seq1  CCTCTTGGAGACAGTGGGGAGGAGGAATGGGATGAGGAACTATGGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGAGACAGTGGGGAGGAGGAATGGGATGAGGAACTATGGGATGG  550

seq1  CAGACTGGGAGGGAGGCAATGACTGGACTATGAAATTATGAAAGTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGGAGGGAGGCAATGACTGGACTATGAAATTATGAAAGTATTTA  600

seq1  AAAAATTCACATATATTTTCTGAATTGTATTTAGTACTCATCATCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCACATATATTTTCTGAATTGTATTTAGTACTCATCATCAAGAA  650

seq1  TATTTA-TTTTTTTAAAAATTCTGTCTCATCTTACTTTTTAAAAGATTTC  699
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTTTTTAAAAATTCTGTCTCATCTTACTTTTTAAAAGATTTC  700

seq1  ATTTTAAAAAAAATATTGTTTTGAAAGGAATCTTTATCCATAATTCTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAAAAATATTGTTTTGAAAGGAATCTTTATCCATAATTCTTAT  750

seq1  AAAGCCATACAAATAAGAGT-GGTAGGTTGTAGATGTAAAAGTAGATATA  798
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  AAAGCCATACAAATAAGAGTGGGTAGGTTGTAGATGTAAAAGTAAATATA  800

seq1  TGAATATTTTTAATCAGTATT-ACT-GGAGAAATAAAATATAACAAAAAC  846
      ||||||||||| |||| |||| ||| ||||| ||||||||| ||| || |
seq2  TGAATATTTTTTATCA-TATTCACTGGGAGATATAAAATATTACATAAGC  849

seq1  ATATGAACAATACACATTTTTATTTACCTGTTAAATACTGGAAGA  891
      |||||||| |  ||||||| ||||| | || ||||||||||||||
seq2  ATATGAACCAATCACATTTGTATTTGCGTGCTAAATACTGGAAGA  894