BAC Information

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BAC

Clone NameB6Ng01-205M03
Chromosome1 (Build37)
Map Location 82,342,942 - 82,343,997
singlet/doubletsinglet
Overlap geneRhbdd1
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205M03.bB6Ng01-205M03.g
ACCGA025351GA025352
length1,0431,088
definitionB6Ng01-205M03.b B6Ng01-205M03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttatcttttttactaatagatttttttgacacattattcaat
agaattcagcttttgtattatgttaaggccatagcttttttaaaaaacaa
aaccaaaaacatcttatgagttaaagtataccacagaagcccatgtaaaa
aaaatgtagcttccctatcccagccaccaatggtgtcaataagcaggttt
ctgagcccttaactttaggtgcagtctcaggttttcatgctgtggctaca
gacactgttgatagaggtgccttggtggttgtccttctggactcctgacc
tacagaacctgtgtctaagatgacagtcgttctgtgctattatgttgggg
agtgtttttcttcagcaggtgtgatgtcagcagtgagtcaaaagacagga
ggaaaggggaagaggggagtgtgaggagtatgtcttgggaagagaatcag
gaagacctgagccaaaggaaaggagaaccaaagagagggacagatccgca
gtgagcttgtattgaacagagtcgtcacacagcaaggcttcagagcaaca
gtttccactgtgatttgaaacctttaaaaattgtgactgggggggctggt
gagatggctcagtgggtaagagcacccgactgctcttctgaaggtctgaa
gttcaaatcccagcaaccacatggtggctcacaaccatctgtaacaaggt
ctgacaccctcttctggagtgtctgaagacagctacagtgtacttacata
taataaataaataaatcttaaaaaaaaaaaaagagtttccttggaggctg
gaaagatggctcagtggttaagagtattgactgctcttcccaaggtcctg
agttcaattcccagcaaccacatgatggctcgcaatcatctgtatgggat
ctgatgccctcttctggtgtgtctaagacaccttcagtgtactctataat
aaataaatcttaaaaaaaaaattgtactggacttggttgctcgttgcctg
tccccgcacactgtgaataaaatggaaaagatgataattgagt
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattatcgaaaactaaatcaggtggtaactccaattgcagctgc
tgtaccagatgtagtttcgttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggatcaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtggggcatgcagagatatttccttctaagg
tgaaagataagttattgcacctggcccctcctacaaccaagaaagaagca
caacgtttagtgggtctatttggattctggagacaacacatccctcactt
gggtgtgttacttaggccttatttaccaagtgactcggaaagctgctagc
tttgtgtggggcctggaacaggagaaaggcctttcacaggtccagcctgc
tgttgcaggctgctcctagcactttgaccataatgacccagcagactcct
atgggtcttgaggtgtctggtggttgatgtagatgcctgtttggaactct
tcagacaaggtccctggtatgtgtaaattcacagcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82342942_82343997
seq2: B6Ng01-205M03.b_44_1086

seq1  GAATTCTCTTATCTTTTTTACTAATAGATTTTTTTGACACATTATTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTATCTTTTTTACTAATAGATTTTTTTGACACATTATTCAAT  50

seq1  AGAATTCAGCTTTTGTATTATGTTAAGGCCATAGCTTTTTTAAAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAGCTTTTGTATTATGTTAAGGCCATAGCTTTTTTAAAAAACAA  100

seq1  AACCAAAAACATCTTATGAGTTAAAGTATACCACAGAAGCCCATGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAACATCTTATGAGTTAAAGTATACCACAGAAGCCCATGTAAAA  150

seq1  AAAATGTAGCTTCCCTATCCCAGCCACCAATGGTGTCAATAAGCAGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGCTTCCCTATCCCAGCCACCAATGGTGTCAATAAGCAGGTTT  200

seq1  CTGAGCCCTTAACTTTAGGTGCAGTCTCAGGTTTTCATGCTGTGGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCTTAACTTTAGGTGCAGTCTCAGGTTTTCATGCTGTGGCTACA  250

seq1  GACACTGTTGATAGAGGTGCCTTGGTGGTTGTCCTTCTGGACTCCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTGATAGAGGTGCCTTGGTGGTTGTCCTTCTGGACTCCTGACC  300

seq1  TACAGAACCTGTGTCTAAGATGACAGTCGTTCTGTGCTATTATGTTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACCTGTGTCTAAGATGACAGTCGTTCTGTGCTATTATGTTGGGG  350

seq1  AGTGTTTTTCTTCAGCAGGTGTGATGTCAGCAGTGAGTCAAAAGACAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTTCTTCAGCAGGTGTGATGTCAGCAGTGAGTCAAAAGACAGGA  400

seq1  GGAAAGGGGAAGAGGGGAGTGTGAGGAGTATGTCTTGGGAAGAGAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGGAAGAGGGGAGTGTGAGGAGTATGTCTTGGGAAGAGAATCAG  450

seq1  GAAGACCTGAGCCAAAGGAAAGGAGAACCAAAGAGAGGGACAGATCCGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTGAGCCAAAGGAAAGGAGAACCAAAGAGAGGGACAGATCCGCA  500

seq1  GTGAGCTTGTATTGAACAGAGTCGTCACACAGCAAGGCTTCAGAGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTTGTATTGAACAGAGTCGTCACACAGCAAGGCTTCAGAGCAACA  550

seq1  GTTTCCACTGTGATTTGAAACCTTTAAAAATTGTGACTGGGGGGGCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACTGTGATTTGAAACCTTTAAAAATTGTGACTGGGGGGGCTGGT  600

seq1  GAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTGAAGGTCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTGAAGGTCTGAA  650

seq1  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGGT  700

seq1  CTGACACCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATA  750

seq1  TAATAAATAAATAAATCTTAAAAAAAAAAAAAGAGTTTCCTTGGAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATAAATAAATCTTAAAAAAAAAAAAAGAGTTTCCTTGGAGGCTG  800

seq1  GAAAGATGGCTCAGTGGTTAAGAGTATTGACTGCTCTTCCAAAGGTCCTG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAAGATGGCTCAGTGGTTAAGAGTATTGACTGCTCTTCCCAAGGTCCTG  850

seq1  AGTTCAATTCCCAGCAACCACATGATGGCTCGCAATCATCTGTAATGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTTCAATTCCCAGCAACCACATGATGGCTCGCAATCATCTGT-ATGGGA  899

seq1  TCTGATGCCCTCTTCTGGTGTGTCTAAAGACACCTACAGTGTACTCATAT  950
      ||||||||||||||||||||||||| ||||||||| |||||||||| |||
seq2  TCTGATGCCCTCTTCTGGTGTGTCT-AAGACACCTTCAGTGTACTC-TAT  947

seq1  AAATAAAATAAATCTTTAAAAAAAAAAATTGTGACTGGACATGGGTGCTC  1000
      ||   |||||||||||  |||||||||||||| ||||||| ||| |||||
seq2  AA--TAAATAAATCTT--AAAAAAAAAATTGT-ACTGGACTTGGTTGCTC  992

seq1  GTGCCCTGTCCCCAGCACACTGCAGACAGAAGATGGAAAAAGATGACAAG  1050
      ||  ||||||||| ||||||||  || | || |||| ||||||||| || 
seq2  GTTGCCTGTCCCC-GCACACTG-TGA-ATAAAATGG-AAAAGATGATAA-  1037

seq1  TTGAGT  1056
      ||||||
seq2  TTGAGT  1043