BAC Information

Click to search

BAC

Clone NameB6Ng01-206K20
Chromosome1 (Build37)
Map Location 127,628,946 - 127,766,742
singlet/doubletdoublet
Overlap genenone
Upstream geneActr3, Slc35f5
Downstream geneLypd1, E030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206K20.bB6Ng01-206K20.g
ACCGA026033GA026034
length1,123240
definitionB6Ng01-206K20.b B6Ng01-206K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,628,946 - 127,629,968)(127,766,503 - 127,766,742)
sequence
gaattccctcctgtggaacaggcctcagagccaatcagaaggcagtaatg
cctctgtatgcagctattgtaccagagtgcccatcttgcctgtccttctt
tcaggtttggggttgggcaccaatgtcctccatcccttcaggggtccagt
attgttcacagttcatcatctctgtagaaaaggggccataacaactagtt
tttattcccataatgactcttcttgcatagttttggaacagtgagagggt
cttgctcatgatggagtgggtctataccaattacacatccagggactggg
aaaataaccagaatgtggcccggtggcctccttaggcacactgtgaatta
ggttaacgtcatgctcatgacatgcttcagcccgagggccttgtcggctt
ttctttttaaacttttggtattagtctcagctcagactcagtacttaaga
tttcttgaaatttctggaatttctcagaggtgaagttaccatgaaacatg
gctatatgtctctgcagaggaaatgcagacgtcttctctgcacattcttg
gactggtgtggcagaattcttcctcagtaagtcccagacatccccttact
atggattccacaacctttcatggctcactgattgataacccaagccaaca
tctaatacgacgtgaacagggatgtatagaatctattccaggggcatcaa
aggaactgtcagactttgctaatatatacttttcacatcaaggtttacat
ctttgaattaagtctggaaactgggtgaagcaactgtgatatttttcaac
tgtagcaaattatattagccttctgttctttagcttgcatgtgtgcatgc
atatttgtgtgtgcatgggtattcatgtgtgtgtgtgtgttttagttttt
actacaaatcaagcaataccctactcagctgcaggtcttcttttaatttg
tgggagctcttatatatggagttcctggtgatctgtgtcccatcagcagg
agaatattgtcagtcaggcatcccaaggacactcagcttgttgtacatta
acagtaccatgttccactctcttggatgtaaggctgctctctcatcgtat
gttgaaaagaaacactatcagag

tgcagaacaagttcaaccattatccaaggatgtgtttgttagggtatggg
gatggagcacacagctttctgtgtgtgccatgcgacagacactgtgggac
gttgctctttgagaatctagaaagccgactagacgctccctgtacctccc
acgggctgaacaagacatagctttgaaagcccaccagcaaaggtagtgag
agaaggcaggttgggaaggaggagggtggaggaggaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_127628946_127629968
seq2: B6Ng01-206K20.b_158_1170

seq1  GGTTGGGCACCAATGTCCTCCATCCCTTCAGGGGTCCAGTATTGTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGCACCAATGTCCTCCATCCCTTCAGGGGTCCAGTATTGTTCACA  50

seq1  GTTCATCATCTCTGTAGAAAAGGGGCCATAACAACTAGTTTTTATTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCATCTCTGTAGAAAAGGGGCCATAACAACTAGTTTTTATTCCCA  100

seq1  TAATGACTCTTCTTGCATAGTTTTGGAACAGTGAGAGGGTCTTGCTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTCTTCTTGCATAGTTTTGGAACAGTGAGAGGGTCTTGCTCATG  150

seq1  ATGGAGTGGGTCTATACCAATTACACATCCAGGGACTGGGAAAATAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGGGTCTATACCAATTACACATCCAGGGACTGGGAAAATAACCA  200

seq1  GAATGTGGCCCGGTGGCCTCCTTAGGCACACTGTGAATTAGGTTAACGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGCCCGGTGGCCTCCTTAGGCACACTGTGAATTAGGTTAACGTC  250

seq1  ATGCTCATGACATGCTTCAGCCCGAGGGCCTTGTCGGCTTTTCTTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATGACATGCTTCAGCCCGAGGGCCTTGTCGGCTTTTCTTTTTAA  300

seq1  ACTTTTGGTATTAGTCTCAGCTCAGACTCAGTACTTAAGATTTCTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGTATTAGTCTCAGCTCAGACTCAGTACTTAAGATTTCTTGAAA  350

seq1  TTTCTGGAATTTCTCAGAGGTGAAGTTACCATGAAACATGGCTATATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAATTTCTCAGAGGTGAAGTTACCATGAAACATGGCTATATGTC  400

seq1  TCTGCAGAGGAAATGCAGACGTCTTCTCTGCACATTCTTGGACTGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGGAAATGCAGACGTCTTCTCTGCACATTCTTGGACTGGTGTG  450

seq1  GCAGAATTCTTCCTCAGTAAGTCCCAGACATCCCCTTACTATGGATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTCTTCCTCAGTAAGTCCCAGACATCCCCTTACTATGGATTCCA  500

seq1  CAACCTTTCATGGCTCACTGATTGATAACCCAAGCCAACATCTAATACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTCATGGCTCACTGATTGATAACCCAAGCCAACATCTAATACGA  550

seq1  CGTGAACAGGGATGTATAGAATCTATTCCAGGGGCATCAAAGGAACTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACAGGGATGTATAGAATCTATTCCAGGGGCATCAAAGGAACTGTC  600

seq1  AGACTTTGCTAATATATACTTTTCACATCAAGGTTTACATCTTTGAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGCTAATATATACTTTTCACATCAAGGTTTACATCTTTGAATTA  650

seq1  AGTCTGGAAACTGGGTGAAGCAACTGTGATATTTTTCAACTGTAGCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGAAACTGGGTGAAGCAACTGTGATATTTTTCAACTGTAGCAAAT  700

seq1  TATATTAGCCTTCTGTTCTTTAGCTTGCATGTGTGCATGCATATTTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGCCTTCTGTTCTTTAGCTTGCATGTGTGCATGCATATTTGTGT  750

seq1  GTGCATGGGTATTCATGTGTGTGTGTGTG-TTTAGTTTTTACTACAAATC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGCATGGGTATTCATGTGTGTGTGTGTGTTTTAGTTTTTACTACAAATC  800

seq1  AAGCAATACCCTACTCAGCTGCAGGTC-TCTTTT-ATATGT-GGAGCTCT  846
      ||||||||||||||||||||||||||| |||||| || ||| ||||||||
seq2  AAGCAATACCCTACTCAGCTGCAGGTCTTCTTTTAATTTGTGGGAGCTCT  850

seq1  TATATATGGAGTTCCTTGTGATCTGTGTCCCATCAGCA-GAGAATATTGT  895
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  TATATATGGAGTTCCTGGTGATCTGTGTCCCATCAGCAGGAGAATATTGT  900

seq1  CAGTCAAGGCATCCCAAAGGACACTCCAGCCTTGTTGTACATT-ACAGTA  944
      ||||| ||||||||| ||||||||| ||| ||||||||||||| ||||| 
seq2  CAGTC-AGGCATCCC-AAGGACACT-CAG-CTTGTTGTACATTAACAGT-  945

seq1  ACCATGTTCAACTCCTCCTTGGATGTTAAAGGCTGCTTCCTCCTCATCGT  994
      ||||||||| ||||   |||||||||  |||||||||  || ||||||| 
seq2  ACCATGTTCCACTC--TCTTGGATGT--AAGGCTGCT--CT-CTCATCG-  987

seq1  TATGTTGAAAAAAAAACACTATTCCAGAG  1023
      ||||||| |||| |||||||||  |||||
seq2  TATGTTG-AAAAGAAACACTAT--CAGAG  1013


seq1: chr1_127766503_127766742
seq2: B6Ng01-206K20.g_71_310 (reverse)

seq1  TCTTTCCTCCTCCACCCTCCTCCTTCCCAACCTGCCTTCTCTCACTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCCTCCACCCTCCTCCTTCCCAACCTGCCTTCTCTCACTACCT  50

seq1  TTGCTGGTGGGCTTTCAAAGCTATGTCTTGTTCAGCCCGTGGGAGGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTGGGCTTTCAAAGCTATGTCTTGTTCAGCCCGTGGGAGGTACA  100

seq1  GGGAGCGTCTAGTCGGCTTTCTAGATTCTCAAAGAGCAACGTCCCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCGTCTAGTCGGCTTTCTAGATTCTCAAAGAGCAACGTCCCACAGT  150

seq1  GTCTGTCGCATGGCACACACAGAAAGCTGTGTGCTCCATCCCCATACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCGCATGGCACACACAGAAAGCTGTGTGCTCCATCCCCATACCCT  200

seq1  AACAAACACATCCTTGGATAATGGTTGAACTTGTTCTGCA  240
      ||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACATCCTTGGATAATGGTTGAACTTGTTCTGCA  240


| Home | SequenceCutter | Blast | Download |