BAC Information

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BAC

Clone NameB6Ng01-206L18
Chromosome1 (Build37)
Map Location 170,290,649 - 170,380,664
singlet/doubletdoublet
Overlap genePbx1
Upstream geneAldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206L18.bB6Ng01-206L18.g
ACCGA026076GA026077
length5631,105
definitionB6Ng01-206L18.b B6Ng01-206L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,380,096 - 170,380,664)(170,290,649 - 170,291,739)
sequence
agtgttgactccagaatttctgtttgtgatattattatgactattattat
tattgttgttgttactattattatattgggggcattgtgaggaaagacat
ccaaagaatcaatttgaggagaataacttcaaatgcataaaagttccata
aaagagaatatatgtgggcaggggttcaaagaaacaatagaggaaaattc
cacaggcctgaaagctgtaagatttcagctgtaagaactttgtgaatcct
caagactgaccgtgtaaaccaagatacaccatcgtgaaatctgaggatgt
cagagacaaatgaagggatccatcgcagtatttcaggacatacactacaa
accaaagattctcagttacaaccggttacaaaggttatcagttatgatcg
gttcacttcttcctattgtttaaagcaattatttcataaagtacgatttt
attatatacataggtgtgccagaagtaaagccagtatttgaaagggaaag
agagaaaaagacagaaggggaagaagggaaaaaagaagggggagaggaag
gagtgggggtggg

gaattctctataagaaaggtcagtgaagatggctttctgtcaactccata
tccaggaggaagaaggttagggctggtgcgccagctcttacccatcttca
ttcagagcttggcttccccccattccaccactggaatcacaagagcctcc
tagcccctagggaaaatgggtggcatccccagaggcaagatgcagagcta
cgaggaacaggaggagcaaagccacgtgttccttttcttgacaacatcta
ccctagtccagccatgtcaggaaggtgctgaaagggatatgaatgcttcg
gctatggcaaggtcctatggtttcggggcagaacgatcataggtcaggcc
gagtaatcatgatgataacaataacagtatctgtatttgtccagagacga
ccggatggcgtgaagggaatcacattaaatccaagaggactcagataaaa
tgatgctaagggtcagaccgaatctaacaacagtctgtgatttgtggcca
tgccgctgctctaatttgcctctctacggctgatggcccatgaaggtgag
gggtgttattgactgttactgggcttggctcatagtacaagcaagtcaca
gcatcactggcttggtccccgactctgctacagtagatcacccttcaaag
gatattttctttctttcttttttttttaaatacatgaaaaggatcaaatg
tggaccagatacattttcaattctttcatttgattttcccaccttgattt
gctacaaaagctttattacgtttactgactttacatccatgttgttttat
ttcttgtttgtttaaagggcataaccagatgcaagtgtctttctactaaa
acaatatgtcttgtttatatattattctatggtcgacttgtaaacagtta
ttggcaggggctgtctttttttcctatcacactttgcaaatatgcccgag
gctaagtagcaaatgagccttcttccaataaactaaataatatgaaatta
gtaagtgacttggccctctcatggtgggggaatttatctctgtaaaaggt
tcaacagcagaagtgacagctttttacttttctctcttaacctaaatttt
gtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170380096_170380664
seq2: B6Ng01-206L18.b_56_624 (reverse)

seq1  CCCACCCCCACTCCTTCCTCTCCCCCTTCTTTTTTCCCTTCTTCCCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCACTCCTTCCTCTCCCCCTTCTTTTTTCCCTTCTTCCCCTTC  50

seq1  TGTCTTTTTCTCTCTTTCCCTTTCAAATACTGGCTTTACTTCTGGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTCTCTCTTTCCCTTTCAAATACTGGCTTTACTTCTGGCACAC  100

seq1  CTATGTATATAATAAAATCGTACTTTATGAAATAATTGCTTTAAACAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATATAATAAAATCGTACTTTATGAAATAATTGCTTTAAACAATA  150

seq1  GGAAGAAGTGAACCGATCATAACTGATAACCTTTGTAACCGGTTGTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGTGAACCGATCATAACTGATAACCTTTGTAACCGGTTGTAACT  200

seq1  GAGAATCTTTGGTTTGTAGTGTATGTCCTGAAATACTGCGATGGATCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTTTGGTTTGTAGTGTATGTCCTGAAATACTGCGATGGATCCCT  250

seq1  TCATTTGTCTCTGACATCCTCAGATTTCACGATGGTGTATCTTGGTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTCTCTGACATCCTCAGATTTCACGATGGTGTATCTTGGTTTAC  300

seq1  ACGGTCAGTCTTGAGGATTCACAAAGTTCTTACAGCTGAAATCTTACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCAGTCTTGAGGATTCACAAAGTTCTTACAGCTGAAATCTTACAGC  350

seq1  TTTCAGGCCTGTGGAATTTTCCTCTATTGTTTCTTTGAACCCCTGCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCCTGTGGAATTTTCCTCTATTGTTTCTTTGAACCCCTGCCCAC  400

seq1  ATATATTCTCTTTTATGGAACTTTTATGCATTTGAAGTTATTCTCCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTCTTTTATGGAACTTTTATGCATTTGAAGTTATTCTCCTCAA  450

seq1  ATTGATTCTTTGGATGTCTTTCCTCACAATGCCCCCAATATAATAATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCTTTGGATGTCTTTCCTCACAATGCCCCCAATATAATAATAGT  500

seq1  AACAACAACAATAATAATAATAGTCATAATAATATCACAAACAGAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAATAATAATAATAGTCATAATAATATCACAAACAGAAATTC  550

seq1  TGGAGTCAACACTGAATTC  569
      |||||||||||||||||||
seq2  TGGAGTCAACACTGAATTC  569


seq1: chr1_170290649_170291739
seq2: B6Ng01-206L18.g_70_1174

seq1  GAATTCTCTATAAGAAAGGTCAGTGAAGATGGCTTTCTGTCAACTCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATAAGAAAGGTCAGTGAAGATGGCTTTCTGTCAACTCCATA  50

seq1  TCCAGGAGGAAGAAGGTTAGGGCTGGTGCGCCAGCTCTTACCCATCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGGAAGAAGGTTAGGGCTGGTGCGCCAGCTCTTACCCATCTTCA  100

seq1  TTCAGAGCTTGGCTTCCCCCCATTCCACCACTGGAATCACAAGAGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCTTGGCTTCCCCCCATTCCACCACTGGAATCACAAGAGCCTCC  150

seq1  TAGCCCCTAGGGAAAATGGGTGGCATCCCCAGAGGCAAGATGCAGAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTAGGGAAAATGGGTGGCATCCCCAGAGGCAAGATGCAGAGCTA  200

seq1  CGAGGAACAGGAGGAGCAAAGCCACGTGTTCCTTTTCTTGACAACATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAACAGGAGGAGCAAAGCCACGTGTTCCTTTTCTTGACAACATCTA  250

seq1  CCCTAGTCCAGCCATGTCAGGAAGGTGCTGAAAGGGATATGAATGCTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTCCAGCCATGTCAGGAAGGTGCTGAAAGGGATATGAATGCTTCG  300

seq1  GCTATGGCAAGGTCCTATGGTTTCGGGGCAGAACGATCATAGGTCAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGCAAGGTCCTATGGTTTCGGGGCAGAACGATCATAGGTCAGGCC  350

seq1  GAGTAATCATGATGATAACAATAACAGTATCTGTATTTGTCCAGAGACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATCATGATGATAACAATAACAGTATCTGTATTTGTCCAGAGACGA  400

seq1  CCGGATGGCGTGAAGGGAATCACATTAAATCCAAGAGGACTCAGATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATGGCGTGAAGGGAATCACATTAAATCCAAGAGGACTCAGATAAAA  450

seq1  TGATGCTAAGGGTCAGACCGAATCTAACAACAGTCTGTGATTTGTGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTAAGGGTCAGACCGAATCTAACAACAGTCTGTGATTTGTGGCCA  500

seq1  TGCCGCTGCTCTAATTTGCCTCTCTACGGCTGATGGCCCATGAAGGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCTGCTCTAATTTGCCTCTCTACGGCTGATGGCCCATGAAGGTGAG  550

seq1  GGGTGTTATTGACTGTTACTGGGCTTGGCTCATAGTACAAGCAAGTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTATTGACTGTTACTGGGCTTGGCTCATAGTACAAGCAAGTCACA  600

seq1  GCATCACTGGCTTGGTCCCCGACTCTGCTACAGTAGATCACCCTTCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACTGGCTTGGTCCCCGACTCTGCTACAGTAGATCACCCTTCAAAG  650

seq1  GATA-TTTCTTTCTTTCTTTTTTTTTTAAATACATGAAAAGGATCAAATG  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCTTTCTTTCTTTTTTTTTTAAATACATGAAAAGGATCAAATG  700

seq1  TGGACCAGATACATTTTCAATTCTTTCATTTGATTTTCCCACCTTGATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGATACATTTTCAATTCTTTCATTTGATTTTCCCACCTTGATTT  750

seq1  GCTACAAAAGCTTTATTACG-TTACTGACTTTACATCCATGTTGTTTTA-  797
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  GCTACAAAAGCTTTATTACGTTTACTGACTTTACATCCATGTTGTTTTAT  800

seq1  TTCTTGTTTGTTTAAA-GGCATAACCAGATGCAAGTGTCTTTCTACTAAA  846
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTGTTTAAAGGGCATAACCAGATGCAAGTGTCTTTCTACTAAA  850

seq1  ACAATATGTCTTGTTTATATATTA-TCTATGGTCGAC-TGTAAACAG-TA  893
      |||||||||||||||||||||||| |||||||||||| ||||||||| ||
seq2  ACAATATGTCTTGTTTATATATTATTCTATGGTCGACTTGTAAACAGTTA  900

seq1  ATGGCAGGGGCTGTC--TTTTTCCTATCACAC-TTGCAAATATGCCCCGA  940
       ||||||||||||||  ||||||||||||||| ||||||||||| |||||
seq2  TTGGCAGGGGCTGTCTTTTTTTCCTATCACACTTTGCAAATATG-CCCGA  949

seq1  GGCTAAGTAGC-AATGAG-CTTC-TCCAATAACTAAAATAAATAATGAAT  987
      ||||||||||| |||||| |||| ||||||||   ||||||   ||||| 
seq2  GGCTAAGTAGCAAATGAGCCTTCTTCCAATAAACTAAATAA--TATGAAA  997

seq1  TAAGTAAGTGAACTTGGCCCTCTCCATGGTGGGGG-ATTTATCTCTGTAA  1036
      | |||||||| |||||||||||| ||||||||||| ||||||||||||||
seq2  TTAGTAAGTG-ACTTGGCCCTCT-CATGGTGGGGGAATTTATCTCTGTAA  1045

seq1  AAGGGTC-ACAGCAG-AGTGACAGC-TTTTACTTTCCTCTCTT-ACTTAA  1082
      |||| || ||||||| ||||||||| ||||||||| ||||||| || |||
seq2  AAGGTTCAACAGCAGAAGTGACAGCTTTTTACTTTTCTCTCTTAACCTAA  1095

seq1  ATTTT-TGCC  1091
      ||||| ||||
seq2  ATTTTGTGCC  1105


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