BAC Information

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BAC

Clone NameB6Ng01-206M15
Chromosome1 (Build37)
Map Location 25,535,872 - 25,537,017
singlet/doubletsinglet
Overlap geneBai3
Upstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206M15.bB6Ng01-206M15.g
ACCGA026116GA026117
length1,2911,142
definitionB6Ng01-206M15.b B6Ng01-206M15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcctatttaggataggtcttcccatttataatagcgtaatcta
ggcagtccatcacagacgtgtccaggaacatgtttccactgctatgtcaa
attccagcaagttgactctctcagtattaatcatcccacccagtaatatc
tgtattgaaactgtaaatcattttggatgctatgaaaattttggcaatat
tcatcattccaatccacaaactcgggatgtctttatttttccatatgtac
tcttcaatttcttttagcaatgttctaaaattttcattgccaagaatgtt
aacctcttcagttcaacttgttcctgaagattgctttgtggtttctataa
atggcaatgattcgttcattctttttcaaatactttgctattgatgttta
acagcattgctgatttttctgttgcttttctaagaagcatcaattttact
aagttcttttattagttctaatgcttttctgggagaatctttggttttta
tctctataagaccatctgtgaacagaaagaatttgactcatttgttctga
atacatatgctctttctctttctttcttgattgtctggacttccaactct
atgttaaatacatagagagagaaggctagtacccttgtcccttgtcttct
taaagatctttaaaaaaaatgcttcacctatcaatttagttcaattttag
ctgtttgattatgttatgtggcacttattgtgttgagggaccctccttct
atgatgctgaggtaccctctttagattaagttgtgacattgtcctatatt
ttatgttgagctaccttcctcctatgctttatatatattgtttctgtctg
acagggatgttagattttgccaaatgagttttgccaatcttgagatatag
catagtttctatccttcattctcctgatgtggcttgccatgtttatacac
tcgatatgctgatccaacttgctctccatcaaaggaatggatccacatga
acatgttaattaattttaatgtgttattataattgattttcttgtattat
caaatacttttgctgagtatctgcattttaaaaatgaatattagcctgaa
agcaccgttaggtggtggtgttcctttctgctttagtggtaagcgaagtc
tatgaatgtttttgtctttgaactcgctccttttggttgagagaccaacc
agggcacctttaaaagaaggcatgaatgagccttattcagttccgagtta
gtctccatgatatacacttgtggcacgagaactacagatgc

gaattctggagactcttcagaaggtatacaaatgctagggccctgagagg
ttgaacgctgttagtagtggcggtggcgagttattggttggttgctatta
gttgttaagtagtcctgtatgaaaaaagaaggcagaggacgaggaggcag
agaaagagaaaaggaagaaaggggttttaagaacaatgaatgagaaagca
ggagagagaaatcttgaatgaaaggtatgcttttaagaatatctatttgg
gacattgtcttaggtcagttccccagatttaaagtttcattttacaagtt
cccttggtacacaggtttttggtttttcattacaatagaaaggtaatatt
taagaatcttgtttatagagaatccagtccaaatgtaatttcctgatggg
agaagagatatagaaacagaaatttaatatttccttggacgattaaatca
ctggatccctgagttaagactcccttagacattctctgctggggagtcat
ggctgagggcatggtataatccagagaagaaatctgtctgccagaaagag
gcttctcacagttctgacaacttataagattatcttgcaggacattctgg
aatcaagacatcttgcacagttcttaattatgaatatattctggcagcat
cagtaactcctaaaaatggacctgggggcacctgagttttatatgttcat
tttcccaatgtagccacattttacaaatctgttatctattttcattacat
tattattattttttaattagagtatggggataggcagttgggccttgttg
gttaggtactgacaggacactggattttaccataaaactcaaataataac
aacatgtccttgcttttacccttctgtctctagaaactacactgtccacc
atgcagactgttgctaacaaagcttggtctgaggttttaaaatttacacc
actgctctgcttttgatccattcattctgattatttattgagtaatttcc
tatatatttgtttgctttctgaaaattcatggtcctaccacctcccaatg
ccatacttattcactactggatgaggctgttatatagcttgaactggaca
tgctagattgtacctccatgggactattacttagtatatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_25535872_25537017
seq2: B6Ng01-206M15.g_64_1205

seq1  GAATTCTGGAGACTCTTCAGAAGGTATACAAATGCTAGGGCCCTGAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGACTCTTCAGAAGGTATACAAATGCTAGGGCCCTGAGAGG  50

seq1  TTGAACGCTGTTAGTAGTGGCGGTGGCGAGTTATTGGTTGGTTGCTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACGCTGTTAGTAGTGGCGGTGGCGAGTTATTGGTTGGTTGCTATTA  100

seq1  GTTGTTAAGTAGTCCTGTATGAAAAAAGAAGGCAGAGGACGAGGAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAAGTAGTCCTGTATGAAAAAAGAAGGCAGAGGACGAGGAGGCAG  150

seq1  AGAAAGAGAAAAGGAAGAAAGGGGTTTTAAGAACAATGAATGAGAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAAAAGGAAGAAAGGGGTTTTAAGAACAATGAATGAGAAAGCA  200

seq1  GGAGAGAGAAATCTTGAATGAAAGGTATGCTTTTAAGAATATCTATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAAATCTTGAATGAAAGGTATGCTTTTAAGAATATCTATTTGG  250

seq1  GACATTGTCTTAGGTCAGTTCCCCAGATTTAAAGTTTCATTTTACAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTCTTAGGTCAGTTCCCCAGATTTAAAGTTTCATTTTACAAGTT  300

seq1  CCCTTGGTACACAGGTTTTTGGTTTTTCATTACAATAGAAAGGTAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTACACAGGTTTTTGGTTTTTCATTACAATAGAAAGGTAATATT  350

seq1  TAAGAATCTTGTTTATAGAGAATCCAGTCCAAATGTAATTTCCTGATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATCTTGTTTATAGAGAATCCAGTCCAAATGTAATTTCCTGATGGG  400

seq1  AGAAGAGATATAGAAACAGAAATTTAATATTTCCTTGGACGATTAAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGATATAGAAACAGAAATTTAATATTTCCTTGGACGATTAAATCA  450

seq1  CTGGATCCCTGAGTTAAGACTCCCTTAGACATTCTCTGCTGGGGAGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCCCTGAGTTAAGACTCCCTTAGACATTCTCTGCTGGGGAGTCAT  500

seq1  GGCTGAGGGCATGGTATAATCCAGAGAAGAAATCTGTCTGCCAGAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGGCATGGTATAATCCAGAGAAGAAATCTGTCTGCCAGAAAGAG  550

seq1  GCTTCTCACAGTTCTGACAACTTATAAGATTATCTTGCAGGACATTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCACAGTTCTGACAACTTATAAGATTATCTTGCAGGACATTCTGG  600

seq1  AATCAAGACATCTTGCACAGTTCTTAATTATGAATATATTCTGGCAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGACATCTTGCACAGTTCTTAATTATGAATATATTCTGGCAGCAT  650

seq1  CAGTAACTCCTAAAAATGGACCTGGGGGCACCTGAGTTTTATATGTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTCCTAAAAATGGACCTGGGGGCACCTGAGTTTTATATGTTCAT  700

seq1  TTTCCCAATGTAGCCACATTTTACAAATCTGTTATCTATTTTCATTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAATGTAGCCACATTTTACAAATCTGTTATCTATTTTCATTACAT  750

seq1  TATTATTATTTTTTAATTAGAGTATGGGGATAGGCAGTTGGGCCTTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTTTTTAATTAGAGTATGGGGATAGGCAGTTGGGCCTTGTTG  800

seq1  GTTAGGTACTGACAGGACACTGGATTTTACCATAAAACTCAAATAATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTACTGACAGGACACTGGATTTTACCATAAAACTCAAATAATAAC  850

seq1  AACATGTCCTTGCTTTTACCCTTCTGTCTCTAGAAACTACACTGTCCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTCCTTGCTTTTACCCTTCTGTCTCTAGAAACTACACTGTCCACC  900

seq1  ATGCAGACTGTTGCTAACAAAGCTTGGTCTGAGGTTTTAAAATTTACACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACTGTTGCTAACAAAGCTTGGTCTGAGGTTTTAAAATTTACACC  950

seq1  ACTGCTCTGCTTTTGAT-CATTCATTCTGATTATTTATTGAGTA--TTTC  997
      ||||||||||||||||| ||||||||||||||||||||||||||  || |
seq2  ACTGCTCTGCTTTTGATCCATTCATTCTGATTATTTATTGAGTAATTTCC  1000

seq1  TATATA-TTGTTTGCTTTCTGAAAAATTTCAT-GTCCTAACA-CTCCC-A  1043
      |||||| ||||||||||||||||||  ||||| |||||| || ||||| |
seq2  TATATATTTGTTTGCTTTCTGAAAA--TTCATGGTCCTACCACCTCCCAA  1048

seq1  TG-CATACTTTATTCACTACTGAATTAAGGCCTGTATATAGCTTGAACTG  1092
      || ||||| ||||||||||||| | | ||||   ||||||||||||||| 
seq2  TGCCATAC-TTATTCACTACTGGA-TGAGGCTGTTATATAGCTTGAACT-  1095

seq1  GGACATGCTAGAATTGTACCTCCAATTGGGACATATTATACTTAAGTATA  1142
      ||||||||||| ||||||||||||  |||||| |||  ||||| ||||||
seq2  GGACATGCTAG-ATTGTACCTCCA--TGGGAC-TAT--TACTT-AGTATA  1138

seq1  TCTT  1146
      ||||
seq2  TCTT  1142


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