BAC Information

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BAC

Clone NameB6Ng01-207H06
Chromosome1 (Build37)
Map Location 69,335,092 - 69,497,221
singlet/doubletdoublet
Overlap geneEG241084
Upstream geneErbb4, LOC667842
Downstream geneIkzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207H06.bB6Ng01-207H06.g
ACCGA026600GA026601
length975950
definitionB6Ng01-207H06.b B6Ng01-207H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,335,092 - 69,335,871)(69,496,274 - 69,497,221)
sequence
gaattcctagtcctaaatgggatgtctccatcaaatctctacccttaagg
ctcaggaaaccttctggaaaaagaggcagagactttaagagcaaaaggga
gcagatgatgccaatgaaacaatgtcttccagaaacaacaggattggtgt
acctatgaactcaaagagactttggcagcatcacaggtccaagcaagggg
agttccagcacccagaggagtgagcaagcatgatcccatccctaaccaag
aaactatctccaattgacaactgcttagttctctccagtggagtctcaca
gggaatacaaaccacactgaagggccccatgcttagtagatggtcaaatc
aagatgcattcagtagtaattggagatagtgtctgcttatttatttgttt
gttatctcatagtgctttttcttggcatttttattactgtttttgttgtt
gttgttttgcttatatgttatcgtgttcagttgtatgtttctgtgggttt
tctttgtgttcctgtctctgtgggcttatatgtttctcatgctccttttt
tttttcacttttgtctctgatggttttgttctattctggctttggtcttt
tattatttatgtgtttatattttcgaaagaaaatgtagagttgaatgact
ggggaggaactggaaggaaaagaaggagagcaaatcttgatttgatcagg
ttgcatttatataaaacataagttcaaaacaaaatttaatttattatttt
aaaaaaaaatagaaacaaaatcatggaattttgaaggtaaatgatttggg
gctacaaaatattatacttagtgagattaccccattcccaggaagacaaa
tgctgcatgctttctgtttgtgggtcttagctctaaatcttaatgtaagt
gtataactggaataaccacagataccagaaagtactaaaagccatggttg
gggaagggaagaattccttctagaa
gaattcccaggggttgagggccaggtaatcctttcagaatgactctcacc
tgatactccctgactaaggtgggactctgaaaaaaaaaaaagaaaagaaa
agaaaaaaaaagaaagtctctctcttctttcttttccttactccttcttg
cttaaacaataaccaccaccccatcgcaaatgttttctgtctctggtgga
taacttcctcttatactttcccttgtcaactgttcttctccgggtataag
aagggataataagagatgtataaaggatcagagttagtgacctgggaaaa
tttaaagaaaggataaaagacaaaacaaaggagaaacatttgtctaccct
tcaccaggacaagcaactgagcatctaagaactcagcacaaccgtggtga
gattttttttcccagtcctcccatcaaggagcatgagagataagaaagga
agtagagtagcttgcaacctagtgtgcggcttcctggtagaggctcaagt
tatcaggtccacttagaggaccatctaacataggctcacttgctttcttt
tggtggcagtaagaggcattccactgcctcagagttacacacttactctg
tttcagagtatttcccatgtaaatacacttcacagccttagattgaagag
aggcaacatgggagagaccagatttcatgcctaggttctcagagtttgca
ggtggatgttaaggtgtaacactcaagttttttttttttttttttttttt
ttaattttatttgaaagtcctttcctgggaaagtttgtttgattggttgg
ttgttttttgtttgtttgcttcgctttgttcctggttgacattcaaccat
ctctaactgtgggaaagaattctcttttcttttctcttaaattctattaa
aggacagtgcatgagacatgggttcagattcctcaggtgcccatgcgaca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69335092_69335871
seq2: B6Ng01-207H06.b_223_1005

seq1  GCAAGGGGAGTTCCAGCACCCAGAGGAGTGAGCAAGCATGATCCCATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGGAGTTCCAGCACCCAGAGGAGTGAGCAAGCATGATCCCATCCC  50

seq1  TAACCAAGAAACTATCTCCAATTGACAACTGCTTAGTTCTCTCCAGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGAAACTATCTCCAATTGACAACTGCTTAGTTCTCTCCAGTGGA  100

seq1  GTCTCACAGGGAATACAAACCACACTGAAGGGCCCCATGCTTAGTAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACAGGGAATACAAACCACACTGAAGGGCCCCATGCTTAGTAGATG  150

seq1  GTCAAATCAAGATGCATTCAGTAGTAATTGGAGATAGTGTCTGCTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCAAGATGCATTCAGTAGTAATTGGAGATAGTGTCTGCTTATTT  200

seq1  ATTTGTTTGTTATCTCATAGTGCTTTTTCTTGGCATTTTTATTACTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGTTATCTCATAGTGCTTTTTCTTGGCATTTTTATTACTGTTT  250

seq1  TTGTTGTTGTTGTTTTGCTTATATGTTATCGTGTTCAGTTGTATGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTTTGCTTATATGTTATCGTGTTCAGTTGTATGTTTCT  300

seq1  GTGGGTTTTCTTTGTGTTCCTGTCTCTGTGGGCTTATATGTTTCTCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTTCTTTGTGTTCCTGTCTCTGTGGGCTTATATGTTTCTCATGC  350

seq1  TCCTTTTTTTTTTCACTTTTGTCTCTGATGGTTTTGTTCTATTCTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTTTTTCACTTTTGTCTCTGATGGTTTTGTTCTATTCTGGCTT  400

seq1  TGGTCTTTTATTATTTATGTGTTTATATTTTCGAAAGAAAATGTAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTTATTATTTATGTGTTTATATTTTCGAAAGAAAATGTAGAGTT  450

seq1  GAATGACTGGGGAGGAACTGGAAGGAAAAGAAGGAGAGCAAATCTTGA-T  499
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAATGACTGGGGAGGAACTGGAAGGAAAAGAAGGAGAGCAAATCTTGATT  500

seq1  TGATCAGGTTGCA-TTATATAAAACATAAGTTCAAAAC-AAATTTAATTT  547
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TGATCAGGTTGCATTTATATAAAACATAAGTTCAAAACAAAATTTAATTT  550

seq1  ATTATTT--AAAAAAAATAGAAACAAAATCATGGAA-TTTGAAGGTAAAT  594
      |||||||  ||||||||||||||||||||||||||| |||||||||||||
seq2  ATTATTTTAAAAAAAAATAGAAACAAAATCATGGAATTTTGAAGGTAAAT  600

seq1  GA-TTGGGGCTACAAAATATTATACTTAGTGAGA-TAACCCAATCCCAGG  642
      || ||||||||||||||||||||||||||||||| || |||| |||||||
seq2  GATTTGGGGCTACAAAATATTATACTTAGTGAGATTACCCCATTCCCAGG  650

seq1  AAGACAAATGCTGCATGCTTTCTGTTTGTGGGTCTTAGCTCTAAATCTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGACAAATGCTGCATGCTTTCTGTTTGTGGGTCTTAGCTCTAAATCTT-  699

seq1  AAATGTAAGTGTATAAACTGGAATAACCACAGATACCAGAAAGTACGAAA  742
       ||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  -AATGTAAGTGTAT-AACTGGAATAACCACAGATACCAGAAAGTACTAAA  747

seq1  AGCCATGGGTGGTGGAAGGGAAGAATATCTATCTAGAA  780
      |||||||| ||| ||||||||||||| ||  |||||||
seq2  AGCCATGGTTGG-GGAAGGGAAGAAT-TCCTTCTAGAA  783

seq1: chr1_69496274_69497221
seq2: B6Ng01-207H06.g_64_1013 (reverse)

seq1  TGTCACATGGGCA-CTG-GGGATCTGAACCCATGTCTCCTGCCCTGTCCT  48
      |||| |||||||| ||| || ||||||||||||||||| ||| |||||| 
seq2  TGTCGCATGGGCACCTGAGGAATCTGAACCCATGTCTCATGCACTGTCC-  49

seq1  TTTTATTAGAATTTTAGAGAAAAG-AAAGAGAATTCTTT-CCACAGTTAG  96
       |||| |||||||| ||||||||| |||||||||||||| ||||||||||
seq2  -TTTAATAGAATTTAAGAGAAAAGAAAAGAGAATTCTTTCCCACAGTTAG  98

seq1  AGAATGTTAGAATGTCAA-CAAGAACAAAGCGAAGCAAACAAACAAAAAA  145
      || ||| | ||||||||| || ||||||||||||||||||||||||||||
seq2  AG-ATGGTTGAATGTCAACCAGGAACAAAGCGAAGCAAACAAACAAAAAA  147

seq1  CAACCAACCAATCAAACAAACTTT-CCAGGAAAGGACTTACAAAATAAAA  194
      |||||||||||||||||||||||| |||||||||||||| | ||||||||
seq2  CAACCAACCAATCAAACAAACTTTCCCAGGAAAGGACTTTC-AAATAAAA  196

seq1  TTAAAAAAAAAAAAAAAAAAAAAAAAACTTGAGTGTTACACCTTAACATC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAAAAAAAAAAAACTTGAGTGTTACACCTTAACATC  246

seq1  CACCTGCAAACTCTGAGAACCTAGGCATGAAATCTGGTCTCTCCCATGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCAAACTCTGAGAACCTAGGCATGAAATCTGGTCTCTCCCATGTT  296

seq1  GCCTCTCTTCAATCTAAGGCTGTGAAGTGTATTTACATGGGAAATACTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTCAATCTAAGGCTGTGAAGTGTATTTACATGGGAAATACTCT  346

seq1  GAAACAGAGTAAGTGTGTAACTCTGAGGCAGTGGAATGCCTCTTACTGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAGTAAGTGTGTAACTCTGAGGCAGTGGAATGCCTCTTACTGCC  396

seq1  ACCAAAAGAAAGCAAGTGAGCCTATGTTAGATGGTCCTCTAAGTGGACCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGAAAGCAAGTGAGCCTATGTTAGATGGTCCTCTAAGTGGACCT  446

seq1  GATAACTTGAGCCTCTACCAGGAAGCCGCACACTAGGTTGCAAGCTACTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTGAGCCTCTACCAGGAAGCCGCACACTAGGTTGCAAGCTACTC  496

seq1  TACTTCCTTTCTTATCTCTCATGCTCCTTGATGGGAGGACTGGGAAAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTTTCTTATCTCTCATGCTCCTTGATGGGAGGACTGGGAAAAAA  546

seq1  AATCTCACCACGGTTGTGCTGAGTTCTTAGATGCTCAGTTGCTTGTCCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACCACGGTTGTGCTGAGTTCTTAGATGCTCAGTTGCTTGTCCTG  596

seq1  GTGAAGGGTAGACAAATGTTTCTCCTTTGTTTTGTCTTTTATCCTTTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGTAGACAAATGTTTCTCCTTTGTTTTGTCTTTTATCCTTTCTT  646

seq1  TAAATTTTCCCAGGTCACTAACTCTGATCCTTTATACATCTCTTATTATC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTCCCAGGTCACTAACTCTGATCCTTTATACATCTCTTATTATC  696

seq1  CCTTCTTATACCCGGAGAAGAACAGTTGACAAGGGAAAGTATAAGAGGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTATACCCGGAGAAGAACAGTTGACAAGGGAAAGTATAAGAGGAA  746

seq1  GTTATCCACCAGAGACAGAAAACATTTGCGATGGGGTGGTGGTTATTGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCACCAGAGACAGAAAACATTTGCGATGGGGTGGTGGTTATTGTT  796

seq1  TAAGCAAGAAGGAGTAAGGAAAAGAAAGAAGAGAGAGACTTTCTTTTTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGAAGGAGTAAGGAAAAGAAAGAAGAGAGAGACTTTCTTTTTTT  846

seq1  TTCTTTTCTTTTCTTTTTTTTTTTTCAGAGTCCCACCTTAGTCAGGGAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTTTTTTTTTTCAGAGTCCCACCTTAGTCAGGGAGT  896

seq1  ATCAGGTGAGAGTCATTCTGAAAGGATTACCTGGCCCTCAACCCCTGGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGAGAGTCATTCTGAAAGGATTACCTGGCCCTCAACCCCTGGGA  946

seq1  ATTC  948
      ||||
seq2  ATTC  950