BAC Information

Click to search

BAC

Clone NameB6Ng01-207K06
Chromosome1 (Build37)
Map Location 148,439,794 - 148,550,529
singlet/doubletdoublet
Overlap geneB830045N13Rik
Upstream geneLOC383571
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207K06.bB6Ng01-207K06.g
ACCGA026734GA026735
length1,158903
definitionB6Ng01-207K06.b B6Ng01-207K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,549,350 - 148,550,529)(148,439,794 - 148,440,695)
sequence
gaattcaatctaagaaattaatgtgactattctgtttagttattaataac
cttgctttttgctaaacacaataatattattagcctaatttgccatagaa
atatcattcaaagtgtgttgtttcagtgtaccacccttcataaccctatc
ctctgctttccatttatttgacatttcttttggaaattttacctacatca
tttattatgttatcagttttgataaccttactatgtacaaagtcaaatga
cattagtgagcaagtaatattgttccataaattctacattacattacact
ttgtcctttagaaacttgtatatgctaactctatttttaaattgtatata
tatatatatatatatatatctgtgactcactttcaccctaataaaacatc
ttgatatattttaaaaactataacctaaggaacaattgtaaagataatct
atatgctttctaaggtttattttacaaacacaattctaagaattctctgt
gaacttcaaaattcaagtcaaatttaattatacttggtcataaaaatgaa
aacaaaaccctacttatcaactgaaaatactgcatcaaactgcataaaat
tataccttataaataaaaggtttgaaaaaggacaacaccttttaaaaata
gtcatttgagtcactggttggagaaatatccagacagatatcatagaaat
tgtataaaactctataaggtctcaatggggataaccttagccaaaatgcc
caacattgaggagagggaaatcaaagagcccacctgcagtatctagacag
gaccttaagcaaagcaaaggggttactaacccacagtcaaaatttctgac
acagaactgtttctgtctaaaagaactgcaggggcacaaatggagaagag
actgaaggaaaggcagtccaatgactggccgaacttagaatccatttcat
gggagggcaccaaagtcctgacattattattgatgcgaggatgtgctcac
agagaggaacctgccatggctgtcacctgagagttctgccagcagatgac
tgagacagagcagatactacacccaacattgactgagtaggacctatgtt
ttgattagggcagaatgtagagctatgtatctgaccattgaagacagcat
tctcaatt

gaattcttctcccttattctatgagacctctctctctctctaattccatg
tttgtcttatcttcctaactttccatctcccctctgctcattctttagtt
cctatcttctcacctcattctgcctctctcactctgactctttccagtct
ctcacatctcatcatgcttcaatctgcgaggaggaagtgaagaaaagggt
acccttgaaagactcagtgttctgtgatctttctgacttccaaattatga
gttaaagatgagaatattttttgaaatttctcagtctcctgcatttcctt
acaataatgaaaaagccctaatatactgagttacctataatgctttctgt
attaagctggaaagaatttcatttcaggcccttatggttaaagtacagta
gtcctctatacatttgcaaacaattgacttacaatagtatacaaatagca
caaaaatgtgcagcaatgaatcctgctggttaaactggttatgcataggc
aaaagaaaactggacgtcaatctcacagaacatatagaaatacaatcaaa
attgataaaggcttgacataagactgaagttttaaaattatttaaagaaa
attacgtttggtagaattctgcattaaaatcatctagccctgggcttttt
atggctggaaggttattactgactgcttctatttccttacaagttatggt
actgattagatagtttaactgatcttgatttaactttgatacatggtgtc
tgtctggaaaatcattcctttcttctagatttaccaattttgttgagtta
gacattttttttttctcaacccctggaaatttccagagaactaggatgag
ggagactcccaggactcaatgtaggtgacattacatgaaatgcccaggaa
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148549350_148550529
seq2: B6Ng01-207K06.b_42_1199 (reverse)

seq1  AATTGAGAATGCTGGTCTTCCTATGGGGTCACTATTCCCTTAGGCTTCTT  50
      ||||||||||||| ||||| | ||  |||||  ||   | |||   ||| 
seq2  AATTGAGAATGCT-GTCTT-CAAT--GGTCA-GAT--ACATAG--CTCTA  41

seq1  CCATCCTTCCCCTAATTCAAACATAGGGTTCCCCTACTTCAGTTCAATGG  100
      |  ||  | |||||||  |||||||||     ||||| |||| ||||| |
seq2  CATTC--TGCCCTAATCAAAACATAGG----TCCTAC-TCAG-TCAAT-G  82

seq1  TTGGGTGTAAGTATCTGCTTCTGTCTCAGTCATCTGCTGGCAGAACCTCT  150
      |||||||| ||||||||| |||||||||||||||||||||||||| ||||
seq2  TTGGGTGT-AGTATCTGC-TCTGTCTCAGTCATCTGCTGGCAGAA-CTCT  129

seq1  CAGGTGACAGCCATGGCAGGTTCCTCTCTGTTGAGCACATCCTCGCATCA  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGGTGACAGCCATGGCAGGTTCCTCTCTG-TGAGCACATCCTCGCATCA  178

seq1  ATAATAATGTCAGGACTTTGGTGCCCTCCCATGAAATGGATTCTAAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATGTCAGGACTTTGGTGCCCTCCCATGAAATGGATTCTAAGTTC  228

seq1  GGCCAGTCATTGGACTGCCTTTCCTTCAGTCTCTTCTCCATTTGTGCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTCATTGGACTGCCTTTCCTTCAGTCTCTTCTCCATTTGTGCCCC  278

seq1  TGCAGTTCTTTTAGACAGAAACAGTTCTGTGTCAGAAATTTTGACTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTCTTTTAGACAGAAACAGTTCTGTGTCAGAAATTTTGACTGTGG  328

seq1  GTTAGTAACCCCTTTGCTTTGCTTAAGGTCCTGTCTAGATACTGCAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAACCCCTTTGCTTTGCTTAAGGTCCTGTCTAGATACTGCAGGTG  378

seq1  GGCTCTTTGATTTCCCTCTCCTCAATGTTGGGCATTTTGGCTAAGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTGATTTCCCTCTCCTCAATGTTGGGCATTTTGGCTAAGGTTAT  428

seq1  CCCCATTGAGACCTTATAGAGTTTTATACAATTTCTATGATATCTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGAGACCTTATAGAGTTTTATACAATTTCTATGATATCTGTCTG  478

seq1  GATATTTCTCCAACCAGTGACTCAAATGACTATTTTTAAAAGGTGTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCTCCAACCAGTGACTCAAATGACTATTTTTAAAAGGTGTTGTC  528

seq1  CTTTTTCAAACCTTTTATTTATAAGGTATAATTTTATGCAGTTTGATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAAACCTTTTATTTATAAGGTATAATTTTATGCAGTTTGATGCA  578

seq1  GTATTTTCAGTTGATAAGTAGGGTTTTGTTTTCATTTTTATGACCAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCAGTTGATAAGTAGGGTTTTGTTTTCATTTTTATGACCAAGTA  628

seq1  TAATTAAATTTGACTTGAATTTTGAAGTTCACAGAGAATTCTTAGAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATTTGACTTGAATTTTGAAGTTCACAGAGAATTCTTAGAATTG  678

seq1  TGTTTGTAAAATAAACCTTAGAAAGCATATAGATTATCTTTACAATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAAAATAAACCTTAGAAAGCATATAGATTATCTTTACAATTGTT  728

seq1  CCTTAGGTTATAGTTTTTAAAATATATCAAGATGTTTTATTAGGGTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGTTATAGTTTTTAAAATATATCAAGATGTTTTATTAGGGTGAAA  778

seq1  GTGAGTCACAGATATATATATATATATATATATATACAATTTAAAAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCACAGATATATATATATATATATATATATACAATTTAAAAATAG  828

seq1  AGTTAGCATATACAAGTTTCTAAAGGACAAAGTGTAATGTAATGTAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCATATACAAGTTTCTAAAGGACAAAGTGTAATGTAATGTAGAAT  878

seq1  TTATGGAACAATATTACTTGCTCACTAATGTCATTTGACTTTGTACATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAACAATATTACTTGCTCACTAATGTCATTTGACTTTGTACATAG  928

seq1  TAAGGTTATCAAAACTGATAACATAATAAATGATGTAGGTAAAATTTCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTATCAAAACTGATAACATAATAAATGATGTAGGTAAAATTTCCA  978

seq1  AAAGAAATGTCAAATAAATGGAAAGCAGAGGATAGGGTTATGAAGGGTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGTCAAATAAATGGAAAGCAGAGGATAGGGTTATGAAGGGTGG  1028

seq1  TACACTGAAACAACACACTTTGAATGATATTTCTATGGCAAATTAGGCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAAACAACACACTTTGAATGATATTTCTATGGCAAATTAGGCTA  1078

seq1  ATAATATTATTGTGTTTAGCAAAAAGCAAGGTTATTAATAACTAAACAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTATTGTGTTTAGCAAAAAGCAAGGTTATTAATAACTAAACAGA  1128

seq1  ATAGTCACATTAATTTCTTAGATTGAATTC  1180
      ||||||||||||||||||||||||||||||
seq2  ATAGTCACATTAATTTCTTAGATTGAATTC  1158


seq1: chr1_148439794_148440695
seq2: B6Ng01-207K06.g_63_965

seq1  GAATTCTTCTCCCTTATTCTATGAGACCTCTCTCTCTCTCTAATTCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCCCTTATTCTATGAGACCTCTCTCTCTCTCTAATTCCATG  50

seq1  TTTGTCTTATCTTCCTAACTTTCCATCTCCCCTCTGCTCATTCTTTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATCTTCCTAACTTTCCATCTCCCCTCTGCTCATTCTTTAGTT  100

seq1  CCTATCTTCTCACCTCATTCTGCCTCTCTCACTCTGACTCTTTCCAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTCTCACCTCATTCTGCCTCTCTCACTCTGACTCTTTCCAGTCT  150

seq1  CTCACATCTCATCATGCTTCAATCTGCGAGGAGGAAGTGAAGAAAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTCATCATGCTTCAATCTGCGAGGAGGAAGTGAAGAAAAGGGT  200

seq1  ACCCTTGAAAGACTCAGTGTTCTGTGATCTTTCTGACTTCCAAATTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGAAAGACTCAGTGTTCTGTGATCTTTCTGACTTCCAAATTATGA  250

seq1  GTTAAAGATGAGAATATTTTTTGAAATTTCTCAGTCTCCTGCATTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGATGAGAATATTTTTTGAAATTTCTCAGTCTCCTGCATTTCCTT  300

seq1  ACAATAATGAAAAAGCCCTAATATACTGAGTTACCTATAATGCTTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATGAAAAAGCCCTAATATACTGAGTTACCTATAATGCTTTCTGT  350

seq1  ATTAAGCTGGAAAGAATTTCATTTCAGGCCCTTATGGTTAAAGTACAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCTGGAAAGAATTTCATTTCAGGCCCTTATGGTTAAAGTACAGTA  400

seq1  GTCCTCTATACATTTGCAAACAATTGACTTACAATAGTATACAAATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTATACATTTGCAAACAATTGACTTACAATAGTATACAAATAGCA  450

seq1  CAAAAATGTGCAGCAATGAATCCTGCTGGTTAAACTGGTTATGCATAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTGCAGCAATGAATCCTGCTGGTTAAACTGGTTATGCATAGGC  500

seq1  AAAAGAAAACTGGACGTCAATCTCACAGAACATATAGAAATACAATCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAACTGGACGTCAATCTCACAGAACATATAGAAATACAATCAAA  550

seq1  ATTGATAAAGGCTTGACATAAGACTGAAGTTTTAAAATTATTTAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAAAGGCTTGACATAAGACTGAAGTTTTAAAATTATTTAAAGAAA  600

seq1  ATTACGTTTGGTAGAATTCTGCATTAAAATCATCTAGCCCTGGGCTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGTTTGGTAGAATTCTGCATTAAAATCATCTAGCCCTGGGCTTTTT  650

seq1  ATGGCTGGAAGGTTATTACTGACTGCTTCTATTTCCTTACAAGTTATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGAAGGTTATTACTGACTGCTTCTATTTCCTTACAAGTTATGGT  700

seq1  ACTGATTAGATAGTTTAACTGATCTTGATTTAACTTTGATACATGGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTAGATAGTTTAACTGATCTTGATTTAACTTTGATACATGGTGTC  750

seq1  TGTCTGGAAAATCATTCCTTTCTTCTAGATTTACCAATTTTGTTGAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAAAATCATTCCTTTCTTCTAGATTTACCAATTTTGTTGAGTTA  800

seq1  GACA-TTTTTTTTTCTCAACCCCTGGAAATTTCCAGAGAACTAGGATGAG  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTTTTTTCTCAACCCCTGGAAATTTCCAGAGAACTAGGATGAG  850

seq1  GGAGACTCCCAGGACTCAATGTAGGTGACATTACATGAAATGCCCAGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCCCAGGACTCAATGTAGGTGACATTACATGAAATGCCCAGGAA  900

seq1  TGG  902
      |||
seq2  TGG  903


| Home | SequenceCutter | Blast | Download |