BAC Information

Click to search

BAC

Clone NameB6Ng01-208B20
Chromosome1 (Build37)
Map Location 112,565,845 - 112,567,002
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7, LOC100041429, EG626652
Downstream geneCdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208B20.bB6Ng01-208B20.g
ACCGA027080GA027081
length1,1571,203
definitionB6Ng01-208B20.b B6Ng01-208B20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgggaatcacacataacttaatgctgttgtgatggcaaaatcag
tctagaattgacataaaaacagacaagtatcccactacaataaacagagg
actcacaaataaagtgacaatgctatgttcacccaatttctaacaatctg
ataaaagcataaattttttaaaatctattcaagaagtcgtgcttaaaaaa
ctgaatatctttctgctaaaacatgaagttacattaatatccctcacctt
gtacaaaaaccaattcaaattgtgtcaatgacaatcatttaaacttgaaa
cactagaagctctatatgaaaacaagaaaaatcattcgagacaattgggt
agatattaaatttcagaacagaactgaacatcaatagaaccaaaactaac
ccaaattatcaacagatggaactaggtaaaattaaatttttattttttgt
agcaaagtgaactatcagaatggcacaaagacagataggtgaaagaatga
gggtaagtctttgtcagccaaacttaagacaaagtgataatatccagaat
ttaaaaaaaaaatgcagaaagtagactctaaaacaagtaaaaccagaaac
taaaccaaaataaaaactgataatcatcaaatgggttaatacaatcaata
gacacttttcaaaagaagcagggttcagcctggaacatagttttcgaggt
gagttgcttgtgattccctgaaacccattttctatgtctaggctcacttt
ttggtcctgagatccctgcacaaacgtaaaagcatactgctcccatttga
aaaccttcagagaaccccagactagccagtttggaatcctgctttcatca
atcccttcctagttggatcctcctaaaacacagcctgcagatgagagttg
cttgaggttgtgaactttactgtgtagctctgggcttgctctttgttccc
aaggcgacttacaggacctgaagaatatcctgattccatgggggagacct
gcagagaccctaagaatacttgcttgaaacattgtcaacattccccttgc
tagaggggcctcctgagcacagcaatccgaatacaaggtacctgtctctt
atgtctgggccctagcaccagagaaaaactactgcatcaagggtgatcta
gcatcaa

gaattccaattagatcttctttaaaggtctgatagaactctgcactaaac
ccatctggtcctgggctttttttggtttggagactattaatgactgcttc
tatttctttaggggatataggactgtttagatcattaaccagatctttat
ttaactttggtacctggtatctgtctagaaacttgtccatttcatccagg
ttctccagttttgttgactatagcctttggagaaggatctgatggtgttt
tggatttcttcaggatctgttgttatgtctcccttttcatttctgatttt
gttaattaggatgctttccctgtgccttctagtgagtctggctaatggtt
tatctatctagctggatataaaattaactcaaaaaagtcaatgccctttc
tgtacacaaaggataacaggctaagaaagaaattagggaatcaacaccct
tatcaatagtcacaaataatataaaataccttggtgtgactctaaggaag
tgaaagatctgtatgataggaacttcaagtctctgaagaaagaaattaaa
taagatctcagaagatggaaagatctcccatgctcatggattggcaggat
caatagagtaaaaatggctatcttgccaaaagcaatctacagattcaatg
caatccccatcaaaattacaactcaattcttcaaaaaattagaaagggca
atcagcagattcatctggaataacaaaaaacctaggagagcaaaaactct
tctcaaggataaaagtacctctggtggaatcaccatgcctgacctaaagc
tttactacagagcaattgtgatcaaaactgcatggtactggtatagtgac
agacaagtagaccaatgaaatagaaattgaagacccagaaatgaacccac
acacctatggtcacttgatctttcacaagggagcttaaaatcatccagtg
gaagaaagacagcatttttcaacaaactgtgctgatacactgggttgtaa
tcatgttagaagaattcgaaatccatccattcctatcttcttgtactagg
tcaaatctaaggtgaatcaggaactcacattaaaccagagaccctaaaac
ctttaatgaggacatggtgggcaaaagtctagagtaatggtcacagggta
gaatttcctgtgaatagaaaagccaattgactctgtggctgctcgtcata
gat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112565845_112567002
seq2: B6Ng01-208B20.b_48_1204

seq1  GAATTCTGGGAATCACACATAACTTAATGCTGTTGTGATGGCAAAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAATCACACATAACTTAATGCTGTTGTGATGGCAAAATCAG  50

seq1  TCTAGAATTGACATAAAAACAGACAAGTATCCCACTACAATAAACAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATTGACATAAAAACAGACAAGTATCCCACTACAATAAACAGAGG  100

seq1  ACTCACAAATAAAGTGACAATGCTATGTTCACCCAATTTCTAACAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAATAAAGTGACAATGCTATGTTCACCCAATTTCTAACAATCTG  150

seq1  ATAAAAGCATAAATTTTTTAAAATCTATTCAAGAAGTCGTGCTTAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCATAAATTTTTTAAAATCTATTCAAGAAGTCGTGCTTAAAAAA  200

seq1  CTGAATATCTTTCTGCTAAAACATGAAGTTACATTAATATCCCTCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATCTTTCTGCTAAAACATGAAGTTACATTAATATCCCTCACCTT  250

seq1  GTACAAAAACCAATTCAAATTGTGTCAATGACAATCATTTAAACTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAAACCAATTCAAATTGTGTCAATGACAATCATTTAAACTTGAAA  300

seq1  CACTAGAAGCTCTATATGAAAACAAGAAAAATCATTCGAGACAATTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAAGCTCTATATGAAAACAAGAAAAATCATTCGAGACAATTGGGT  350

seq1  AGATATTAAATTTCAGAACAGAACTGAACATCAATAGAACCAAAACTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAAATTTCAGAACAGAACTGAACATCAATAGAACCAAAACTAAC  400

seq1  CCAAATTATCAACAGATGGAACTAGGTAAAATTAAATTTTTATTTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTATCAACAGATGGAACTAGGTAAAATTAAATTTTTATTTTTTGT  450

seq1  AGCAAAGTGAACTATCAGAATGGCACAAAGACAGATAGGTGAAAGAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTGAACTATCAGAATGGCACAAAGACAGATAGGTGAAAGAATGA  500

seq1  GGGTAAGTCTTTGTCAGCCAAACTTAAGACAAAGTGATAATATCCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGTCTTTGTCAGCCAAACTTAAGACAAAGTGATAATATCCAGAAT  550

seq1  TTAAAAAAAAAATGCAGAAAGTAGACTCTAAAACAAGTAAAACCAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAATGCAGAAAGTAGACTCTAAAACAAGTAAAACCAGAAAC  600

seq1  TAAACCAAAATAAAAACTGATAATCATCAAATGGGTTAATACAATCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAAATAAAAACTGATAATCATCAAATGGGTTAATACAATCAATA  650

seq1  GACACTTTTCAAAAGAAGCAGGGTTCAGCCTGGAACATAGTTTTCGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTTCAAAAGAAGCAGGGTTCAGCCTGGAACATAGTTTTCGAGGT  700

seq1  GAGTTGCTTGTGATTCCCTGAAACCCATTTTCTATGTCTAGGCTCACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTTGTGATTCCCTGAAACCCATTTTCTATGTCTAGGCTCACTTT  750

seq1  TTGGTCCTGAGATCCCTGCACAAACGTAAAAGCATACTGCTCCCATTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGAGATCCCTGCACAAACGTAAAAGCATACTGCTCCCATTTGA  800

seq1  AAACCTTCAGAGAACCCCAGACTAGCCAGTTTGGAATCCTGC-TTCATCA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAACCTTCAGAGAACCCCAGACTAGCCAGTTTGGAATCCTGCTTTCATCA  850

seq1  ATCCCTTCCTAGTTGGATCCTCCTAAAACACAGCCTGCAGATGAGAGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCCTAGTTGGATCCTCCTAAAACACAGCCTGCAGATGAGAGTTG  900

seq1  CTTGAGGTTGTGAAACTTTACTGTGTAGCTCTGGGCTTGCTCTTTGTTCC  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTTGTG-AACTTTACTGTGTAGCTCTGGGCTTGCTCTTTGTTCC  949

seq1  CAAGGCGACTTACAGGACCTGAAGAATATCCTGATTCCAT-GGGGAGACC  998
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAGGCGACTTACAGGACCTGAAGAATATCCTGATTCCATGGGGGAGACC  999

seq1  TGCAGAGACCCTAAGAAATACTTGCTTGAAACATTGTCAACATTTCCCTT  1048
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TGCAGAGACCCTAAG-AATACTTGCTTGAAACATTGTCAACATTCCCCTT  1048

seq1  GCTAGAGGGGCCTCCTGAGCACAGCCATCCG-ATAC-AGGTACCCTGTCC  1096
      ||||||||||||||||||||||||| ||||| |||| ||||| ||||| |
seq2  GCTAGAGGGGCCTCCTGAGCACAGCAATCCGAATACAAGGTA-CCTGT-C  1096

seq1  TCTATTGTCTGGCCCCTAGCACCCAGAGAAAAACTACTGCATC-AGGGTG  1145
      |||  ||||||| |||||||| ||||||||||||||||||||| ||||||
seq2  TCTTATGTCTGGGCCCTAGCA-CCAGAGAAAAACTACTGCATCAAGGGTG  1145

seq1  ATCTAGCCATCAA  1158
      |||||| ||||||
seq2  ATCTAG-CATCAA  1157


| Home | SequenceCutter | Blast | Download |