BAC Information

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BAC

Clone NameB6Ng01-208H10
Chromosome1 (Build37)
Map Location 173,924,060 - 174,033,946
singlet/doubletdoublet
Overlap geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa
Upstream geneFcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
Downstream genePex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H10.bB6Ng01-208H10.g
ACCGA027338GA027339
length1,100936
definitionB6Ng01-208H10.b B6Ng01-208H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,924,060 - 173,925,166)(174,033,270 - 174,033,946)
sequence
gaattccccaagaggaaccttcttttgtttttgtttttgtttttcaagac
aaagtttcattctgtggccctggctgccctggaactcactctgtagacaa
ggctggccttgaactcacagagctccaactgcctctgcctttgccttcca
agtgctgggtttaaaagcatgcaccgtcactgtccaatttaagtattttt
ttcttattaaggcatgttttgaccccttaaacttcatgggtacacaagct
ttctcttagggccttgctactccaggtagcctgagaccatcagctacatc
ttctagcgctgtgaactgaattatgttctcagaatttagatgctgaagtc
tcacctaattccacctaattatttgagaagaaattagggtaataaagggg
tgtgagagagaagtctcactgtgaaatcatttacctggttagagatcaga
aacctggtatctctctccctctccacccccaacgtgatgccatcataaga
ggaatgctacccccaacccaagatttttctccagatcccagccacataaa
cctcagattttagctcctagaaccataaaataatgaaattctgttaagtc
atccaatctgtggtactttgtcatggcagcccaagctactaaggcaccag
accctcaagatgtacactcttagtctgacagtggtgacatactcctttaa
tcccagaggcagagacaagtggatcactgagttcgaggccagcctggtct
acagagcaagttccaagacagctaaggctacacagagaaacccagggcct
gtgccagacctgctggatgagactctgcatttctagcaggtgcttgaatg
atctgcacacttgtcataggcacagtgacagctgagccagctctacttgc
ggggagcttgtttcaagatagaataaaccacctgaacttttcaatctaag
aagaagaccctggtgtccagttgtttaatatgccccaaatcaagagcctc
agatctcaatagcagccctggcaaacaatctgcaggtaagtgtatctgct
ttcttctcagttccactcattgttatgggggagggactgggtttaggaga

gaattctctctggattcctgcctggtcatgtgatctctctcttgaccact
cctttcatgatgctctgtgtcacactgtgactgagccaaaagaaccttta
ccaaaggacaaacgttggggctgctccaccttggattttcaacatccaaa
atagtgaataaaataccccccttttcagattcatttatttttattttata
tctacatgtgagtgcctgcattcacgttggagcatactgtctatgcttgg
tgcctgggaaagccaaaagagggcatcagatcgcctgaaactagagttat
agctataagataccacgtgggtactggaaacacctttagtcctctgttag
tgctcttgaccactgagccatctctctagccccctacctcctactccctt
ttggtttttcaagacggttgtttctctgtgtagccctgactgtcctggaa
gttgctctatagaccaggctgtcctcaaccagacactaccgcatggctca
aatccctttttaaaaagtacacagtggctgggcggtggtggcatacgcct
ttaatcccagcactcgggaggcagaggcaggtggatttctgagtttgagg
ccagtctggtcccaggacagccagggctatacagagaaaccctgtcttga
aaaaaaccaaaaaaaaaaaaaaaaaaagtacacagtgtgaagcatttttg
ctgtagctatagaaaacagatacaatagctaaatacattccattaaaaaa
attttttttattaggtattttcctcgtttacattttcaatgctatcccaa
aagtccgccatacccccccccctaaatacattcctaaactcacagttttt
aaaaaccttttccaaatagtttctgtcactcatctccctggtcttccttc
tctttcttggacccaggaccctcatacaaactagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173924060_173925166
seq2: B6Ng01-208H10.b_46_1145

seq1  GAATTCCCCAAGAGGAACCTTCTTTTGTTTTTGTTTTTGTTTTTCAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAGAGGAACCTTCTTTTGTTTTTGTTTTTGTTTTTCAAGAC  50

seq1  AAAGTTTCATTCTGTGGCCCTGGCTGCCCTGGAACTCACTCTGTAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCATTCTGTGGCCCTGGCTGCCCTGGAACTCACTCTGTAGACAA  100

seq1  GGCTGGCCTTGAACTCACAGAGCTCCAACTGCCTCTGCCTTTGCCTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTTGAACTCACAGAGCTCCAACTGCCTCTGCCTTTGCCTTCCA  150

seq1  AGTGCTGGGTTTAAAAGCATGCACCGTCACTGTCCAATTTAAGTATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGTTTAAAAGCATGCACCGTCACTGTCCAATTTAAGTATTTTT  200

seq1  TTCTTATTAAGGCATGTTTTGACCCCTTAAACTTCATGGGTACACAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTAAGGCATGTTTTGACCCCTTAAACTTCATGGGTACACAAGCT  250

seq1  TTCTCTTAGGGCCTTGCTACTCCAGGTAGCCTGAGACCATCAGCTACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAGGGCCTTGCTACTCCAGGTAGCCTGAGACCATCAGCTACATC  300

seq1  TTCTAGCGCTGTGAACTGAATTATGTTCTCAGAATTTAGATGCTGAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCGCTGTGAACTGAATTATGTTCTCAGAATTTAGATGCTGAAGTC  350

seq1  TCACCTAATTCCACCTAATTATTTGAGAAGAAATTAGGGTAATAAAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAATTCCACCTAATTATTTGAGAAGAAATTAGGGTAATAAAGGGG  400

seq1  TGTGAGAGAGAAGTCTCACTGTGAAATCATTTACCTGGTTAGAGATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGAGAAGTCTCACTGTGAAATCATTTACCTGGTTAGAGATCAGA  450

seq1  AACCTGGTATCTCTCTCCCTCTCCACCCCCAACGTGATGCCATCATAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTATCTCTCTCCCTCTCCACCCCCAACGTGATGCCATCATAAGA  500

seq1  GGAATGCTACCCCCAACCCAAGATTTTTCTCCAGATCCCAGCCACATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTACCCCCAACCCAAGATTTTTCTCCAGATCCCAGCCACATAAA  550

seq1  CCTCAGATTTTAGCTCCTAGAACCATAAAATAATGAAATTCTGTTAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATTTTAGCTCCTAGAACCATAAAATAATGAAATTCTGTTAAGTC  600

seq1  ATCCAATCTGTGGTACTTTGTCATGGCAGCCCAAGCTACTAAGGCACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCTGTGGTACTTTGTCATGGCAGCCCAAGCTACTAAGGCACCAG  650

seq1  ACCCTCAAGATGTACACTCTTAGTCTGACAGTGGTGACATACTCCTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAAGATGTACACTCTTAGTCTGACAGTGGTGACATACTCCTTTAA  700

seq1  TCCCAGAGGCAGAGACAAGTGGATCACTGAGTTCGAGGCCAGCCTGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGGCAGAGACAAGTGGATCACTGAGTTCGAGGCCAGCCTGGTCT  750

seq1  ACAGAGCAAGTTCCAAGACAGCTAAGGCTACACAGAGAAACCCAGGGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAAGTTCCAAGACAGCTAAGGCTACACAGAGAAACCCAGGGCCT  800

seq1  GTGCCAGACCTGCTGGATGAGACTCTGCATTTCTAGCAGGTGCTTGAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGACCTGCTGGATGAGACTCTGCATTTCTAGCAGGTGCTTGAATG  850

seq1  ATCTGCACACTTGTCATAGGCACAGTGACAGCTGAGCCAGCTCTACTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACACTTGTCATAGGCACAGTGACAGCTGAGCCAGCTCTACTTGC  900

seq1  GGGGAGC-TGTTTCAAGATAGAATAAACCACCTGAACTTTTCAATCTAAG  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCTTGTTTCAAGATAGAATAAACCACCTGAACTTTTCAATCTAAG  950

seq1  AAAGAAAGACCCCTGGTGTCCAGTTGTTTAATATGCCCCAAATCAAGAGG  999
      ||   |||| |||||||||||||||||||||||||||||||||||||| |
seq2  AA--GAAGA-CCCTGGTGTCCAGTTGTTTAATATGCCCCAAATCAAGA-G  996

seq1  CCTCAGATCTC-ATAGCAGCCCTGGCAAACAAAATCTGCAGGGTAAGTTG  1048
      ||||||||||| ||||||||||||||||||  |||||||| |||||| ||
seq2  CCTCAGATCTCAATAGCAGCCCTGGCAAAC--AATCTGCA-GGTAAG-TG  1042

seq1  TATCTGCTTTCTCTCCAGTTCCACCCCATTGTTATGGGGGAAGGGACTGT  1098
      ||||||||||||   |||||||| | |||||||||||||| |||||||| 
seq2  TATCTGCTTTCTTCTCAGTTCCA-CTCATTGTTATGGGGG-AGGGACTGG  1090

seq1  G-TTAGGAGA  1107
      | ||||||||
seq2  GTTTAGGAGA  1100

seq1: chr1_174033270_174033946
seq2: B6Ng01-208H10.g_67_743 (reverse)

seq1  TTTTTTTTTTTTTTTTTTTGGTTTTTTTCAAGACAGGGTTTCTCTGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGGTTTTTTTCAAGACAGGGTTTCTCTGTATA  50

seq1  GCCCTGGCTGTCCTGGGACCAGACTGGCCTCAAACTCAGAAATCCACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGGACCAGACTGGCCTCAAACTCAGAAATCCACCTG  100

seq1  CCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTATGCCACCACCGCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTATGCCACCACCGCCCAG  150

seq1  CCACTGTGTACTTTTTAAAAAGGGATTTGAGCCATGCGGTAGTGTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGTACTTTTTAAAAAGGGATTTGAGCCATGCGGTAGTGTCTGGT  200

seq1  TGAGGACAGCCTGGTCTATAGAGCAACTTCCAGGACAGTCAGGGCTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGCCTGGTCTATAGAGCAACTTCCAGGACAGTCAGGGCTACAC  250

seq1  AGAGAAACAACCGTCTTGAAAAACCAAAAGGGAGTAGGAGGTAGGGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAACCGTCTTGAAAAACCAAAAGGGAGTAGGAGGTAGGGGGCT  300

seq1  AGAGAGATGGCTCAGTGGTCAAGAGCACTAACAGAGGACTAAAGGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGGCTCAGTGGTCAAGAGCACTAACAGAGGACTAAAGGTGTTT  350

seq1  CCAGTACCCACGTGGTATCTTATAGCTATAACTCTAGTTTCAGGCGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCCACGTGGTATCTTATAGCTATAACTCTAGTTTCAGGCGATCT  400

seq1  GATGCCCTCTTTTGGCTTTCCCAGGCACCAAGCATAGACAGTATGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCTTTTGGCTTTCCCAGGCACCAAGCATAGACAGTATGCTCCA  450

seq1  ACGTGAATGCAGGCACTCACATGTAGATATAAAATAAAAATAAATGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAATGCAGGCACTCACATGTAGATATAAAATAAAAATAAATGAATC  500

seq1  TGAAAAGGGGGGTATTTTATTCACTATTTTGGATGTTGAAAATCCAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGGGGGTATTTTATTCACTATTTTGGATGTTGAAAATCCAAGGT  550

seq1  GGAGCAGCCCCAACGTTTGTCCTTTGGTAAAGGTTCTTTTGGCTCAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCCCCAACGTTTGTCCTTTGGTAAAGGTTCTTTTGGCTCAGTCA  600

seq1  CAGTGTGACACAGAGCATCATGAAAGGAGTGGTCAAGAGAGAGATCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGACACAGAGCATCATGAAAGGAGTGGTCAAGAGAGAGATCACAT  650

seq1  GACCAGGCAGGAATCCAGAGAGAATTC  677
      |||||||||||||||||||||||||||
seq2  GACCAGGCAGGAATCCAGAGAGAATTC  677