BAC Information

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BAC

Clone NameB6Ng01-208N12
Chromosome1 (Build37)
Map Location 149,698,824 - 149,838,175
singlet/doubletdoublet
Overlap genenone
Upstream geneB830045N13Rik
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208N12.bB6Ng01-208N12.g
ACCGA027615GA027616
length1,0231,111
definitionB6Ng01-208N12.b B6Ng01-208N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,837,075 - 149,838,175)(149,698,824 - 149,699,948)
sequence
gaattcaaaatgtcagaatgtcaacaaaacagccacaatatatttttcag
ttacagagtggcattcagttaacagaacaacaattatcttcatataagct
gaatcagatacaactgaagatgaaaaaaataaataaaaccaaaaaataaa
actaaaagaataaataaacaaaaaccatactactgtccctatatataact
aatttgtgctgtgcaccaacaagaacctgctttaaatttccatgccaatt
tacaacccccagactgcaccagacaaggttagtggctattggaaatacca
ccaggacaggactatctaaagacacatttggtagtgtgttaagtatacaa
aaaaaaaaagacactgtgcagtttaaaaacaaatcttacatagccttaca
tttcaacttttttcccttaaaaggagtgggttgtatacaggggtttaaat
gcattataggcaaaaaaaaaaaaaaaaaaaattctagaaccaacttattc
ataatcatcatcgtcatcatcctcttcctcttcttcttcctcatcttcca
cttcctttttcccttgcttttttcagccctgaccacccccttttgatgca
tcaggttttccttacctcagtaggcagcaatacccttcttgtacttctct
ttcagcttggaatccctcttctcatagggctgcttgtcatctgctgtaga
tttgttccacatctctcctagtttctttgtaacatcaccagtggataatc
cagatgctcacctttgattttttggatggtactctggaatttattaatta
cctctttaaataccattatcatttatataaaatttttcttgtgttttttt
tttttttttttagggtatccaggtcttgttgtagtgggttatctgtgctc
tttagctttgttgatttgttcctatccggcctttagccatgctgttgtcc
acgatgtttttggtgtagagatattcagagtggacttaacctcgaatttc
ctgatgcagaagctcctggtggg

gaattctttgtttttaattgatgagtagtactccatttgagtgagtgcag
tataatggagttgagttcatttatgagttcctgcagagaaattaaagcct
gaaaataaaaagagccaaaagattagaacaaatggccagagttgctttgg
ggtcagggagagcaattcagacagacggtaagagaggctagtttaagtca
ttacccttgaaaagtagtttggcctagaataattactgttgaaacatcca
gccagagttcagttagaagtacacatgttgaacatattcaccagtaagac
tctgagatgacaattacatctagtcaataaaagttactattacaggattt
acatatgaatcccaaattttaggaccatatcataacatattacatttcat
tttgatataaataaaaaaattaaagtaataaacattaagatccaatgtac
aaacatttttatgcacatgaaatttaaagtataatagtaaagtagcaaga
aaaattgcaattatcgacttcatttcagacattgttattagtaatttatt
gaaaattttcataaaactcttattctctacacaaaatatcaattcaaatt
gttcaatcattgagccatatcttgtctttgaaatcttaaggaaaagaaaa
taatacgattgactaaattctaaatggaatttataagtatttgagattaa
tatactgtatattgtataatatactgtataacaaaatgtaagctaaatta
gacatttgtaatattgaaaataaaatattatataaacagttttatataat
ggaccagaagtgtaatcttaccatgaagtactctttagttagcccagagt
acaccagattttgagtactgaaaataatttgtttctcaaagaaaaaaatg
tcttttaagatttaagttacatttattttcttgaaaatgatatgattcat
caaagaacaacaatataattgtcgtgctgtttaatcacagttatgagaaa
ggctttaaagtactaaaatccagaaatatctctttcatgactgtttcaat
attagtattttaaaacaattgatgttcaattgttaaaatctatttctgtt
gtagaacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149837075_149838175
seq2: B6Ng01-208N12.b_48_1070 (reverse)

seq1  CCCACCAGGCTGTTCCCATGTGAGAAACTTGTACTGCCCCCTGATTTCCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTACAGCACAACAATACCCACCAGAGGCCTTCTGCATCAGGAAAATCG  100
                        |||||||| |  |||||||||||||||| |||
seq2  ------------------CCCACCAG-GAGCTTCTGCATCAGGAAATTCG  31

seq1  AAGTTAAGTCCACTCTGAATATCTCCTACA-CAAAAACATCGTGGAACAA  149
      | |||||||||||||||||||||| ||||| |||||||||||||| ||||
seq2  AGGTTAAGTCCACTCTGAATATCT-CTACACCAAAAACATCGTGG-ACAA  79

seq1  CAGCATGGCTAAAGGCCAGGATAAGAACAAAATCAACAAAAGCTAAAGAG  199
      ||||||||||||||||| ||||| |||| |||||||| ||||||||||||
seq2  CAGCATGGCTAAAGGCC-GGATAGGAAC-AAATCAAC-AAAGCTAAAGAG  126

seq1  CACAGATAACCCACTACAACAAGACCTGGATACCCTAAAAAAAAAAAAAA  249
      ||||||||||||||||||||||||||||||||||||     |||||||||
seq2  CACAGATAACCCACTACAACAAGACCTGGATACCCT-----AAAAAAAAA  171

seq1  AAAAAAAAACACAAGAAAAATTTTATATAAATGATAATGGTATTTAAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACACAAGAAAAATTTTATATAAATGATAATGGTATTTAAAGA  221

seq1  GGTAATTAATAAATTCCAGAGTACCATCCAAAAAATCAAAGGTGAGCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTAATAAATTCCAGAGTACCATCCAAAAAATCAAAGGTGAGCATC  271

seq1  TGGATTATCCACTGGTGATGTTACAAAGAAACTAGGAGAGATGTGGAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATCCACTGGTGATGTTACAAAGAAACTAGGAGAGATGTGGAACA  321

seq1  AATCTACAGCAGATGACAAGCAGCCCTATGAGAAGAGGGATTCCAAGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAGCAGATGACAAGCAGCCCTATGAGAAGAGGGATTCCAAGCTG  371

seq1  AAAGAGAAGTACAAGAAGGGTATTGCTGCCTACTGAGGTAAGGAAAACCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGTACAAGAAGGGTATTGCTGCCTACTGAGGTAAGGAAAACCT  421

seq1  GATGCATCAAAAGGGGGTGGTCAGGGCTGAAAAAAGCAAGGGAAAAAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATCAAAAGGGGGTGGTCAGGGCTGAAAAAAGCAAGGGAAAAAGGA  471

seq1  AGTGGAAGATGAGGAAGAAGAAGAGGAAGAGGATGATGACGATGATGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGATGAGGAAGAAGAAGAGGAAGAGGATGATGACGATGATGATT  521

seq1  ATGAATAAGTTGGTTCTAGAATTTTTTTTTTTTTTTTTTTTGCCTATAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAGTTGGTTCTAGAATTTTTTTTTTTTTTTTTTTTGCCTATAAT  571

seq1  GCATTTAAACCCCTGTATACAACCCACTCCTTTTAAGGGAAAAAAGTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAACCCCTGTATACAACCCACTCCTTTTAAGGGAAAAAAGTTGA  621

seq1  AATGTAAGGCTATGTAAGATTTGTTTTTAAACTGCACAGTGTCTTTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGGCTATGTAAGATTTGTTTTTAAACTGCACAGTGTCTTTTTTT  671

seq1  TTTTGTATACTTAACACACTACCAAATGTGTCTTTAGATAGTCCTGTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATACTTAACACACTACCAAATGTGTCTTTAGATAGTCCTGTCCT  721

seq1  GGTGGTATTTCCAATAGCCACTAACCTTGTCTGGTGCAGTCTGGGGGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATTTCCAATAGCCACTAACCTTGTCTGGTGCAGTCTGGGGGTTG  771

seq1  TAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAA  821

seq1  TTAGTTATATATAGGGACAGTAGTATGGTTTTTGTTTATTTATTCTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATATATAGGGACAGTAGTATGGTTTTTGTTTATTTATTCTTTTA  871

seq1  GTTTTATTTTTTGGTTTTATTTATTTTTTTCATCTTCAGTTGTATCTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTTTGGTTTTATTTATTTTTTTCATCTTCAGTTGTATCTGAT  921

seq1  TCAGCTTATATGAAGATAATTGTTGTTCTGTTAACTGAATGCCACTCTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTATATGAAGATAATTGTTGTTCTGTTAACTGAATGCCACTCTGT  971

seq1  AACTGAAAAATATATTGTGGCTGTTTTGTTGACATTCTGACATTTTGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAATATATTGTGGCTGTTTTGTTGACATTCTGACATTTTGAAT  1021

seq1  TC  1101
      ||
seq2  TC  1023


seq1: chr1_149698824_149699948
seq2: B6Ng01-208N12.g_67_1177

seq1  GAATTCTTTGTTTTTAATTGATGAGTAGTACTCCATTTGAGTGAGTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTTTAATTGATGAGTAGTACTCCATTTGAGTGAGTGCAG  50

seq1  TATAATGGAGTTGAGTTCATTTATGAGTTCCTGCAGAGAAATTAAAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGAGTTGAGTTCATTTATGAGTTCCTGCAGAGAAATTAAAGCCT  100

seq1  GAAAATAAAAAGAGCCAAAAGATTAGAACAAATGGCCAGAGTTGCTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAAAGAGCCAAAAGATTAGAACAAATGGCCAGAGTTGCTTTGG  150

seq1  GGTCAGGGAGAGCAATTCAGACAGACGGTAAGAGAGGCTAGTTTAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGAGAGCAATTCAGACAGACGGTAAGAGAGGCTAGTTTAAGTCA  200

seq1  TTACCCTTGAAAAGTAGTTTGGCCTAGAATAATTACTGTTGAAACATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTGAAAAGTAGTTTGGCCTAGAATAATTACTGTTGAAACATCCA  250

seq1  GCCAGAGTTCAGTTAGAAGTACACATGTTGAACATATTCACCAGTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTTCAGTTAGAAGTACACATGTTGAACATATTCACCAGTAAGAC  300

seq1  TCTGAGATGACAATTACATCTAGTCAATAAAAGTTACTATTACAGGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGACAATTACATCTAGTCAATAAAAGTTACTATTACAGGATTT  350

seq1  ACATATGAATCCCAAATTTTAGGACCATATCATAACATATTACATTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAATCCCAAATTTTAGGACCATATCATAACATATTACATTTCAT  400

seq1  TTTGATATAAATAAAAAAATTAAAGTAATAAACATTAAGATCCAATGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATAAATAAAAAAATTAAAGTAATAAACATTAAGATCCAATGTAC  450

seq1  AAACATTTTTATGCACATGAAATTTAAAGTATAATAGTAAAGTAGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTATGCACATGAAATTTAAAGTATAATAGTAAAGTAGCAAGA  500

seq1  AAAATTGCAATTATCGACTTCATTTCAGACATTGTTATTAGTAATTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCAATTATCGACTTCATTTCAGACATTGTTATTAGTAATTTATT  550

seq1  GAAAATTTTCATAAAACTCTTATTCTCTACACAAAATATCAATTCAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTTCATAAAACTCTTATTCTCTACACAAAATATCAATTCAAATT  600

seq1  GTTCAATCATTGAGCCATATCTTGTCTTTGAAATCTTAAGGAAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATCATTGAGCCATATCTTGTCTTTGAAATCTTAAGGAAAAGAAAA  650

seq1  TAATACGATTGACTAAATTCTAAATGGAATTTATAAGTATTTGAGATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACGATTGACTAAATTCTAAATGGAATTTATAAGTATTTGAGATTAA  700

seq1  TATACTGTATATTGTATAATATACTGTATAACAAAATGTAAGCTAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTATATTGTATAATATACTGTATAACAAAATGTAAGCTAAATTA  750

seq1  GACATTTGTAATATTGAAAATAAAATATTATATAAACAGTTTTATATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGTAATATTGAAAATAAAATATTATATAAACAGTTTTATATAAT  800

seq1  GGACCAGAAGTGTAATCTTACCATGAAGTACTCTTTAGTTAGCCCAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAAGTGTAATCTTACCATGAAGTACTCTTTAGTTAGCCCAGAGT  850

seq1  ACACCAGATTTTGAGTACTGAAAATAAATTTGTTTCTCAAAAAGAAAAAA  900
      ||||||||||||||||||||||||| |||||||||||||||    |||||
seq2  ACACCAGATTTTGAGTACTGAAAAT-AATTTGTTTCTCAAA---GAAAAA  896

seq1  AATGTCTTTTAAGATTTAAGTTACATT--ATTTCTTGAAAATGATATGAT  948
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  AATGTCTTTTAAGATTTAAGTTACATTTATTTTCTTGAAAATGATATGAT  946

seq1  TCATCAAAGAAC-ACAATATAAATTGTCGTGCTGTTTAATCACAG-TATG  996
      |||||||||||| ||||||| |||||||||||||||||||||||| ||||
seq2  TCATCAAAGAACAACAATAT-AATTGTCGTGCTGTTTAATCACAGTTATG  995

seq1  AGAAAGCCTTAAAAGTTACTTAAAAATTCCAGAAATATTCCTTCTTTCAT  1046
      |||||| ||| |||| ||||   ||| |||||||||||    ||||||||
seq2  AGAAAGGCTTTAAAG-TACT---AAAATCCAGAAATAT---CTCTTTCAT  1038

seq1  GAACCTGTTTTCATATTTAGTATTTTAAAACAAATTTGAATGTT-AAATG  1095
      ||  ||||||  ||| |||||||||||||||||  ||| ||||| || ||
seq2  GA--CTGTTTCAATA-TTAGTATTTTAAAACAA--TTG-ATGTTCAATTG  1082

seq1  TTAAAATCTATTTTCTGTTGTAGAACATTT  1125
      |||||||||| |||||||||||||||||||
seq2  TTAAAATCTA-TTTCTGTTGTAGAACATTT  1111


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