BAC Information

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BAC

Clone NameB6Ng01-209O21
Chromosome1 (Build37)
Map Location 134,128,410 - 134,129,357
singlet/doubletsinglet
Overlap geneLemd1
Upstream geneRassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221
Downstream geneEG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209O21.bB6Ng01-209O21.g
ACCGA028409GA028410
length1,153947
definitionB6Ng01-209O21.b B6Ng01-209O21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgctacaggcatcagatatggagggatggagggctacccagc
cccttaggagctcagctgatttgattaggagccccaagtcccagacacaa
acccatagaatgagagtttattgtttgggtctttctttgttctgatcatt
ccttgattttccctgggtcttctcttttggaataggaatattaattctgt
gccatcatgtattagaagtatgtaactgcagggtctggcatagacttggt
aggggtagtataacatggctcccaaccctgggacagggcatgggcctcca
cgagcgtcgatggctgctgtgggtataaggcttgctgtgggcataaggct
tgcttgtataatagtgtacatattttacattcttccttcaaggaatgtcc
tccctgttaacgttaaggactccatgataatcagagacagcatgagtgtg
gataatgttttagcaaaatggtaaacactgagacctttaggacagccctt
aaggctgtggaaaagagctctaaaaacatgagttcaaaaatatataattt
cttaactatgtaaaacataaggctgtaatataaattgtatgaggagtttc
atggagctaaaggaacagaggcagctgcactgtgaaccatgttgtcagaa
agataccgaggaaggagataaagagatttagggagtgatggtcccaggag
atcccacctagctaaagttttttatgcttacaaaggcaggcagattcttg
agttcaaggttgacccgggacagagcaagggtaggcacaggcaaggtaga
aatggtaatttcagggcagggtcccactcagccagtttatcctctgtgct
taactgaggcaggcagagctctgaattctttgcaattgtttaaaaaaaaa
aaaaaagtgggttggagagatggctcagtggttaagagcaccgactgatc
tttgaacaaaggtcttggagtcaaatcccaacaccacatggtggctttac
accatctgtaatgaagatctgacgcccttcttctggtgcatctgaagaat
gaatacagtgtactcaataaaataaactcttaaaaagaaaaatggctttg
ctgttctactcaagaatgaacggagcctggcgtcattggggaaggcctga
ctt
gaattcctcagttaccaatgcctcgcagtgctcagtgcctagtgtctttg
cttgacaacaggcagagcctgttggatgctgctgcacacactaactgaca
aagggacacgcttagagacacacacatttctcctatgttcctaagtgggc
ctagaaccgagttcgatatgtgaaggctgaggaggtggcacagggtcagg
tgaagctggtgggcccgtggtaacgctttcattgtggggcaaaagggaca
gtgatactctgggtcctagctagaacacaaaagccatttcaaaaggtgga
tttttttttttcattaaaagatcaagtctagactaggatagtttaggtat
agcagaatgtagtatttctttatatgtctgagagtgctcatttttatttt
taacatacatgtagaagtattcatgcattagaattattcataccttcttg
ccttccttgcctttgttttttgagaatttgatatttcctttcaaaatgat
ttttatggctggatctggggaaacaaaaggagaacaggccaggagagcag
atgaggcagcaggagaaaaaaaacaccaagtgctttctctcagccacagg
cgcttccactagggtaagaaaattcacagtgccctttacagagaaaagcg
ccttcctcaggagctgcgggagcctcggagagacatgcttaggccccctg
tggggacgtggctggctgtcctgtttgcacgcctcagagagacataaact
agcaggctctctgagagctgctgttctcagtttagcattgtccctgaaaa
gccagctgtgagctctgtgtgtccccaaatgccagaataggaaggactcc
tatctagaacagcaccctgaagaagggaagccagtagctttctgagtggc
aggacagccatcagtagaaagcagcccatagtggggggaggattcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134128410_134129357
seq2: B6Ng01-209O21.g_72_1018 (reverse)

seq1  CTGAATCCTCCCCCCACTATGGGCTGCTTTCTACTGATGGCTGTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCTCCCCCCACTATGGGCTGCTTTCTACTGATGGCTGTCCTGCC  50

seq1  ACTCAGAAAGCTACTGGCTTCCCCTTCTTCAGGGTGCTGTTCTAGATAGG  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTCAGAAAGCTACTGGCTT-CCCTTCTTCAGGGTGCTGTTCTAGATAGG  99

seq1  AGTCCTTCCTATTCTGGCATTTGGGGACACACAGAGCTCACAGCTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCCTATTCTGGCATTTGGGGACACACAGAGCTCACAGCTGGCTT  149

seq1  TTCAGGGACAATGCTAAACTGAGAACAGCAGCTCTCAGAGAGCCTGCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGACAATGCTAAACTGAGAACAGCAGCTCTCAGAGAGCCTGCTAG  199

seq1  TTTATGTCTCTCTGAGGCGTGCAAACAGGACAGCCAGCCACGTCCCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCTCTCTGAGGCGTGCAAACAGGACAGCCAGCCACGTCCCCACA  249

seq1  GGGGGCCTAAGCATGTCTCTCCGAGGCTCCCGCAGCTCCTGAGGAAGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCTAAGCATGTCTCTCCGAGGCTCCCGCAGCTCCTGAGGAAGGCG  299

seq1  CTTTTCTCTGTAAAGGGCACTGTGAATTTTCTTACCCTAGTGGAAGCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTGTAAAGGGCACTGTGAATTTTCTTACCCTAGTGGAAGCGCC  349

seq1  TGTGGCTGAGAGAAAGCACTTGGTGTTTTTTTTCTCCTGCTGCCTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGAGAGAAAGCACTTGGTGTTTTTTTTCTCCTGCTGCCTCATCT  399

seq1  GCTCTCCTGGCCTGTTCTCCTTTTGTTTCCCCAGATCCAGCCATAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTGGCCTGTTCTCCTTTTGTTTCCCCAGATCCAGCCATAAAAAT  449

seq1  CATTTTGAAAGGAAATATCAAATTCTCAAAAAACAAAGGCAAGGAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAAGGAAATATCAAATTCTCAAAAAACAAAGGCAAGGAAGGCA  499

seq1  AGAAGGTATGAATAATTCTAATGCATGAATACTTCTACATGTATGTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTATGAATAATTCTAATGCATGAATACTTCTACATGTATGTTAAA  549

seq1  AATAAAAATGAGCACTCTCAGACATATAAAGAAATACTACATTCTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATGAGCACTCTCAGACATATAAAGAAATACTACATTCTGCTAT  599

seq1  ACCTAAACTATCCTAGTCTAGACTTGATCTTTTAATGAAAAAAAAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAACTATCCTAGTCTAGACTTGATCTTTTAATGAAAAAAAAAAATC  649

seq1  CACCTTTTGAAATGGCTTTTGTGTTCTAGCTAGGACCCAGAGTATCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTGAAATGGCTTTTGTGTTCTAGCTAGGACCCAGAGTATCACTG  699

seq1  TCCCTTTTGCCCCACAATGAAAGCGTTACCACGGGCCCACCAGCTTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTGCCCCACAATGAAAGCGTTACCACGGGCCCACCAGCTTCACC  749

seq1  TGACCCTGTGCCACCTCCTCAGCCTTCACATATCGAACTCGGTTCTAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGTGCCACCTCCTCAGCCTTCACATATCGAACTCGGTTCTAGGC  799

seq1  CCACTTAGGAACATAGGAGAAATGTGTGTGTCTCTAAGCGTGTCCCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAGGAACATAGGAGAAATGTGTGTGTCTCTAAGCGTGTCCCTTTG  849

seq1  TCAGTTAGTGTGTGCAGCAGCATCCAACAGGCTCTGCCTGTTGTCAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGTGTGTGCAGCAGCATCCAACAGGCTCTGCCTGTTGTCAAGCA  899

seq1  AAGACACTAGGCACTGAGCACTGCGAGGCATTGGTAACTGAGGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACTAGGCACTGAGCACTGCGAGGCATTGGTAACTGAGGAATTC  947