BAC Information

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BAC

Clone NameB6Ng01-210A19
Chromosome1 (Build37)
Map Location 189,134,330 - 189,253,877
singlet/doubletdoublet
Overlap geneGpatch2
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210A19.bB6Ng01-210A19.g
ACCGA028494GA028495
length752322
definitionB6Ng01-210A19.b B6Ng01-210A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,134,330 - 189,135,081)(189,253,556 - 189,253,877)
sequence
gaattccttcataaagcaaatattcactcattttatcttttgtgtaaata
tcaagcttgctttaagcaagatttgactaagattaaaggttatgttcact
ggaaacacttttgggtttagtgttatgttatggggagagaggctgaaact
ctgggctgaggtatacagtatgctgggttagctccatctcttattaatca
tggctaccatggtgtgagccgtaagctgccacatctccgttttagttata
gagtaagttgaggtcgcctccctacataaataaggtgtttacagagcgag
ccttgcaggtttactttctcaggactcttttcgatgtgtcattttaatgt
ctctactctctgaattaccaaagcaggtgttctttcttcattttataggt
gatttgacttttccagagacacacactgtaactctgcttgaccaaaaatc
gatcaggaaacaaatatctttggcgtctctgatatgttttgtgatgtgca
aatcctgtgggaatgctatagggagccacggtcatactgattcttctgtg
gacattgagggtcccaaagcttgagagtgaaactgcacgttaccgaagcc
cacagtgttctgcagggaaaggacattaatattgatttcggatgccttct
gtatgggagattagaatttatgtttaagccttgaagtcctgagacagatc
tttatttttatttttcttatattttattgatatgtgtgtttttgtgtgtg
tg

caggtatgggactagaggatatctgatgtcttctggaaccctcaagtatg
aacaaatgcacacaatgtaaatgtacatgcccaccacacacacacacaca
cacacacacacacgcacatgcacacgcacacacacacgcacatgcacacg
cacatgcacatgcacacaccaaagcaataaaatcttgttgtcctttttcc
aacattccctagtcatgttcctgtctttagttttattcagaaaactgtta
tctttgtgtcacaacagaaggtaaatacacaatgacgaagacacacacag
ggaatgagggggaggggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189134330_189135081
seq2: B6Ng01-210A19.b_47_798

seq1  GAATTCCTTCATAAAGCAAATATTCACTCATTTTATCTTTTGTGTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATAAAGCAAATATTCACTCATTTTATCTTTTGTGTAAATA  50

seq1  TCAAGCTTGCTTTAAGCAAGATTTGACTAAGATTAAAGGTTATGTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTGCTTTAAGCAAGATTTGACTAAGATTAAAGGTTATGTTCACT  100

seq1  GGAAACACTTTTGGGTTTAGTGTTATGTTATGGGGAGAGAGGCTGAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACTTTTGGGTTTAGTGTTATGTTATGGGGAGAGAGGCTGAAACT  150

seq1  CTGGGCTGAGGTATACAGTATGCTGGGTTAGCTCCATCTCTTATTAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGAGGTATACAGTATGCTGGGTTAGCTCCATCTCTTATTAATCA  200

seq1  TGGCTACCATGGTGTGAGCCGTAAGCTGCCACATCTCCGTTTTAGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACCATGGTGTGAGCCGTAAGCTGCCACATCTCCGTTTTAGTTATA  250

seq1  GAGTAAGTTGAGGTCGCCTCCCTACATAAATAAGGTGTTTACAGAGCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGTTGAGGTCGCCTCCCTACATAAATAAGGTGTTTACAGAGCGAG  300

seq1  CCTTGCAGGTTTACTTTCTCAGGACTCTTTTCGATGTGTCATTTTAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGGTTTACTTTCTCAGGACTCTTTTCGATGTGTCATTTTAATGT  350

seq1  CTCTACTCTCTGAATTACCAAAGCAGGTGTTCTTTCTTCATTTTATAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCTCTGAATTACCAAAGCAGGTGTTCTTTCTTCATTTTATAGGT  400

seq1  GATTTGACTTTTCCAGAGACACACACTGTAACTCTGCTTGACCAAAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGACTTTTCCAGAGACACACACTGTAACTCTGCTTGACCAAAAATC  450

seq1  GATCAGGAAACAAATATCTTTGGCGTCTCTGATATGTTTTGTGATGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAAACAAATATCTTTGGCGTCTCTGATATGTTTTGTGATGTGCA  500

seq1  AATCCTGTGGGAATGCTATAGGGAGCCACGGTCATACTGATTCTTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTGGGAATGCTATAGGGAGCCACGGTCATACTGATTCTTCTGTG  550

seq1  GACATTGAGGGTCCCAAAGCTTGAGAGTGAAACTGCACGTTACCGAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGAGGGTCCCAAAGCTTGAGAGTGAAACTGCACGTTACCGAAGCC  600

seq1  CACAGTGTTCTGCAGGGAAAGGACATTAATATTGATTTCGGATGCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTTCTGCAGGGAAAGGACATTAATATTGATTTCGGATGCCTTCT  650

seq1  GTATGGGAGATTAGAATTTATGTTTAAGCCTTGAAGTCCTGAGACAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGAGATTAGAATTTATGTTTAAGCCTTGAAGTCCTGAGACAGATC  700

seq1  TTTATTTTTATTTTTCTTATATTTTATTGATATGTGTGTTTTTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTATTTTTCTTATATTTTATTGATATGTGTGTTTTTGTGTGTG  750

seq1  TG  752
      ||
seq2  TG  752


seq1: chr1_189253556_189253877
seq2: B6Ng01-210A19.g_70_391 (reverse)

seq1  TCTCTCCCCTCCCCCTCATTCCCTGTGTGTGTCTTCGTCATTGTGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCTCCCCCTCATTCCCTGTGTGTGTCTTCGTCATTGTGTATTT  50

seq1  ACCTTCTGTTGTGACACAAAGATAACAGTTTTCTGAATAAAACTAAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGTTGTGACACAAAGATAACAGTTTTCTGAATAAAACTAAAGAC  100

seq1  AGGAACATGACTAGGGAATGTTGGAAAAAGGACAACAAGATTTTATTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATGACTAGGGAATGTTGGAAAAAGGACAACAAGATTTTATTGCT  150

seq1  TTGGTGTGTGCATGTGCATGTGCGTGTGCATGTGCGTGTGTGTGTGCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGTGCATGTGCATGTGCGTGTGCATGTGCGTGTGTGTGTGCGTG  200

seq1  TGCATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGCATGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGCATGTAC  250

seq1  ATTTACATTGTGTGCATTTGTTCATACTTGAGGGTTCCAGAAGACATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTGTGTGCATTTGTTCATACTTGAGGGTTCCAGAAGACATCAG  300

seq1  ATATCCTCTAGTCCCATACCTG  322
      ||||||||||||||||||||||
seq2  ATATCCTCTAGTCCCATACCTG  322


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