BAC Information

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BAC

Clone NameB6Ng01-210B09
Chromosome1 (Build37)
Map Location 98,985,998 - 98,987,159
singlet/doubletsinglet
Overlap geneSlco6c1
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430
Downstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210B09.bB6Ng01-210B09.g
ACCGA028520GA028521
length1,1621,165
definitionB6Ng01-210B09.b B6Ng01-210B09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccaaatggctcagaaggacctaaagaaatg
ttcaacatccttagtcataaggaaaacacaaatcaaaacaattttgatat
tccactttataaaagtcagaatgactaaatcaaaacctcaggtgacagca
gatgctggcaaggatttggagaaagaggaaaactcctccatttctgttgg
gatttcaagctggtacaaccactctggaaatcagtcaggtggtttcttat
aaaattagacacaataataccataggacccagctatgccactcttgggca
tatactcagaagatgctccaatatgtaataaacatacactctccactatg
ttcataacagccttacatataataaccagaagctggaaagaaccaagttg
tccttcaacagaggaatataaagaaaatggggtaaatttacataatggag
tactactcagcaattaaaaacaatgaatttatgagattcttaggcaaatg
gctagatctgtgggatatcatcctgagtgaggtaacccaatcaccaatga
acactcatggtatgcactcactgataagtcagtattagctcaaaagctag
atatacccaagatacaactcacaaagacatgaaactcatgaagaaggaag
accaaagtgtggatactttgttccttcttagaagggggtacaaaacaccc
atggaaggagttacagagacaaagtgtggagcagagactgaaggaatgat
catccagagactgccctacctggggatccatcacatatacaaacaccaaa
cccagacagtattgtggatgccaacaagtgcttgatgacaggagcctgat
atagctgtctcctgagagtttctgtcagtgcctgacaaatacagaagtgg
gttctcacagccatccatgggactaagcacaaggtccccagtgaaggagt
cagagaaaggacctaagagttgaagggatttgcagcccataaggaggaac
ataatataaactaaccagtaaccccagagctcccagggactaaactacaa
cgattgaatacacgtggtgggactcatgtttcagctacatatggtagcaa
aggaatgctagtggagacagcaatggaggagaggctcttggtcctgtata
agggatcctata

gaattcactatttattgtattaacttctttcatatatttaggtaaccatt
actaatctactgtactgcagattcattaacaggagaatcattttgccttt
atgttatctaacttataaaatttatattgtgttttacattgcttaaatct
tacttaagacatatttccatatatatatataaggtcagctttcactactt
tattttgtgtaaataatattgtaagcctgaagacaatctgtgaacttaaa
atgacataggaattctgatatttgttattgcatacccaaaacaatatctt
cccattgcttattctatgtagcaattaatgttttaacacacacacacaga
taaccaactataagttgtttactccagaagtatagtttatttatattcaa
ataagaaaattgttattccttaaaatataaaatgcatgccatattatcat
tgcattgaattgaaagatcattgggttaaatatctcatacatggacatag
ttatttcatgaattatcattatatgtctgtcaacttacccaaatgtttat
tggaacaatagtttgcattcaaattccttcatcaatttttaaggtatcac
tactaaatgagcttctgcagtacttataattttgtgactatgttttagtc
tacaattcaatgttaggtttagattaaaagtataaaataggaaggcacat
tgtcactgtttaatgagcagaaaaacctaaaatcaatactgaaacaatta
gaaatgattccttaatttagaaaatttgaagtgtataaaatcaaagtatg
aaatatagtaatatttacatagctgaatgacttgctgagcaagaaattat
gaatgcactcacaataaatagctatctagaaaatgcctgaaataaattta
gaaatgaagcacctctatagtgaaaattgtaaaacactggtggaaattga
agtacacacacacaccccacacacacacactcacacacacccaaatatca
tacatgatatgataatataacaatgaaaaaccaaaagctaatcctgtatt
atttcatgccaccctaactaatattatatttaggacctttgaaaaacaat
tttgaccgttcctcaggtagagaaaagaatgccaataagttgaatttaac
ctgtacacaacagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98985998_98987159
seq2: B6Ng01-210B09.g_66_1230

seq1  GAATTCACTATTTATTGTATTAACTTCTTTCATATATTTAGGTAACCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTTATTGTATTAACTTCTTTCATATATTTAGGTAACCATT  50

seq1  ACTAATCTACTGTACTGCAGATTCATTAACAGGAGAATCATTTTGCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCTACTGTACTGCAGATTCATTAACAGGAGAATCATTTTGCCTTT  100

seq1  ATGTTATCTAACTTATAAAATTTATATTGTGTTTTACATTGCTTAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATCTAACTTATAAAATTTATATTGTGTTTTACATTGCTTAAATCT  150

seq1  TACTTAAGACATATTTCCATATATATATATAAGGTCAGCTTTCACTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGACATATTTCCATATATATATATAAGGTCAGCTTTCACTACTT  200

seq1  TATTTTGTGTAAATAATATTGTAAGCCTGAAGACAATCTGTGAACTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGTAAATAATATTGTAAGCCTGAAGACAATCTGTGAACTTAAA  250

seq1  ATGACATAGGAATTCTGATATTTGTTATTGCATACCCAAAACAATATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATAGGAATTCTGATATTTGTTATTGCATACCCAAAACAATATCTT  300

seq1  CCCATTGCTTATTCTATGTAGCAATTAATGTTTTAACACACACACACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCTTATTCTATGTAGCAATTAATGTTTTAACACACACACACAGA  350

seq1  TAACCAACTATAAGTTGTTTACTCCAGAAGTATAGTTTATTTATATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAACTATAAGTTGTTTACTCCAGAAGTATAGTTTATTTATATTCAA  400

seq1  ATAAGAAAATTGTTATTCCTTAAAATATAAAATGCATGCCATATTATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAATTGTTATTCCTTAAAATATAAAATGCATGCCATATTATCAT  450

seq1  TGCATTGAATTGAAAGATCATTGGGTTAAATATCTCATACATGGACATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAATTGAAAGATCATTGGGTTAAATATCTCATACATGGACATAG  500

seq1  TTATTTCATGAATTATCATTATATGTCTGTCAACTTACCCAAATGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATGAATTATCATTATATGTCTGTCAACTTACCCAAATGTTTAT  550

seq1  TGGAACAATAGTTTGCATTCAAATTCCTTCATCAATTTTTAAGGTATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAATAGTTTGCATTCAAATTCCTTCATCAATTTTTAAGGTATCAC  600

seq1  TACTAAATGAGCTTCTGCAGTACTTATAATTTTGTGACTATGTTTTAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATGAGCTTCTGCAGTACTTATAATTTTGTGACTATGTTTTAGTC  650

seq1  TACAATTCAATGTTAGGTTTAGATTAAAAGTATAAAATAGGAAGGCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCAATGTTAGGTTTAGATTAAAAGTATAAAATAGGAAGGCACAT  700

seq1  TGTCACTGTTTAATGAGCAGAAAAACCTAAAATCAATACTGAAACAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTTTAATGAGCAGAAAAACCTAAAATCAATACTGAAACAATTA  750

seq1  GAAATGATTCCTTAATTTAGAAAATTTGAAGTGTATAAAATCAAAGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATTCCTTAATTTAGAAAATTTGAAGTGTATAAAATCAAAGTATG  800

seq1  AAATATAGTAATATTTACATAGCTGAATGAACTTGCTGAGCAAGAAATTA  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAATATAGTAATATTTACATAGCTGAATG-ACTTGCTGAGCAAGAAATTA  849

seq1  TGAATGCACTCACAATAAATAGCTATCTAGAAAATGCCTGAAATAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCACTCACAATAAATAGCTATCTAGAAAATGCCTGAAATAAATTT  899

seq1  AGAAATGAAGCACCTCTATAGTGAAAATTGTAAAACACT-GTGGAAATTG  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAATGAAGCACCTCTATAGTGAAAATTGTAAAACACTGGTGGAAATTG  949

seq1  AAGTACACACACACACACACACACACACACACACACACACACACAAATAT  999
      |||||||||||||||| | ||||||||||||| ||||||||| |||||||
seq2  AAGTACACACACACAC-CCCACACACACACACTCACACACACCCAAATAT  998

seq1  CATACATGATAATGATATAATTAACAATGAAAAACAAAAAGCTAAT-CTG  1048
      |||||||||| |||||| |  |||||||||||||| |||||||||| |||
seq2  CATACATGAT-ATGATA-ATATAACAATGAAAAACCAAAAGCTAATCCTG  1046

seq1  TA-TATTCAATGCAACCTTAACTAATATTATATT--AGAACTTTTAAAAA  1095
      || ||||  |||| ||| ||||||||||||||||   || |||| |||||
seq2  TATTATTTCATGCCACCCTAACTAATATTATATTTAGGACCTTTGAAAAA  1096

seq1  CAATATTGA-CGTTCTCAAAGTAGAGAAAAG-ATGCCAATAAGTTGAA-T  1142
      |||| |||| |||||   | ||||||||||| |||||||||||||||| |
seq2  CAATTTTGACCGTTCCTCAGGTAGAGAAAAGAATGCCAATAAGTTGAATT  1146

seq1  TAAACTGTAACACAACAGAG  1162
      ||| |||| |||||||||||
seq2  TAACCTGT-ACACAACAGAG  1165


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