BAC Information

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BAC

Clone NameB6Ng01-210N22
Chromosome1 (Build37)
Map Location 194,048,799 - 194,198,438
singlet/doubletdoublet
Overlap geneKcnh1
Upstream geneNenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210N22.bB6Ng01-210N22.g
ACCGA029093GA029094
length8231,071
definitionB6Ng01-210N22.b B6Ng01-210N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,048,799 - 194,049,617)(194,197,367 - 194,198,438)
sequence
gaattccttcgaaattctgatgtacaagaagaacagtgagtatccgaggc
tcagagcccagtttcatgtgtgtagagggtgaggtattacttccacttct
gtgactgtttggttttgattctttcccctcatctagttactagaagccat
tgtgtgtcactaaccaattaagacttcatctatttttctctcaagagtta
gtcttgtccctcttggttcatttatgaattgctcctgggaggcaccaggg
gagaggcaggagaagccctgtcctgtctgtcttaggttctacctcccata
acttctagctcagtgagagactcttccaggtgcccagctaagagtctgtg
agtaacggtctcatgatgacccaaggagacagtattaactgcgtggcatt
atatattttcgcattggtcttggccacagttacttctaccaagtatacaa
taaagtttgtagccatgcccaagtatagaccttgtcttcctcttaggtgg
cttcttgctgaacagaggtgagctgtcctaagaagtgaggaagtagagtg
atgtcaacctctggtctgtctccacacccatgtacacctgcactcacaca
tgcacatgatgcaaacatgtgttcacacatgcatatcacacacacagcca
atgaagaatcctgctttttataatagtagaattgatcgacaggttgttgg
ttcaactaaacatgtctggagtggcccagatggggcatgagggtgtgtgt
ctatttgggtggtgttctgggctcattgaattgacagcttgctttgagaa
tgcacatgctgctttcatctcaa
gaattccatacttaggatctagcacttaggaggaagagcagccagcatag
gctatgtgtgaggctgtctttaagacaaacggatttcaaaggtaggagca
gccaggtgtctctgcaggacaagacacttgatgtcaaacctggtgacatg
catttgacttctggggcaagttgtcctctggcctcacagggcaccgccat
atgtgtgctctcctcacccacaaaacaaacagatgtagaacactttcttt
ttgattataagaaggtggaaccaggtggagttaggggcacaaaataggac
gtgaaaaggatcggattatatcgcatgaagttctcagagaactaataaaa
atactatattaaaaaagtacaagtgtagtgaagaaagtggatcccatccc
ccacaaacttgttaattaaccagagttcactgatcctcaacttcttatga
tacacatgataaaaatcaatactttctagaagattaaagttttaaataaa
attcaaatgtttcacctgacaaaatgtgtatggaaaatttatggagaaaa
ttatcaagccttcatcataggaattttaaatttttggaataaatcgttaa
gtataataacaccattattaagacattaatttttcctgatttactactgc
attcaaatggattccaagaaaattcccccgaggctctagggcacttggac
taattttaaaattcaacacatggataacagtatatgaactactggcagga
gagctgacttaccaattagagcagagttggggacccagagacacagtggt
agaagaggagctcaagttaaagtgcttctggaaaagcttttttggatatt
tttagtgtagcacacccaaaataaaaactactccttgtctgtctccccat
aacccccaccgaccaatttctgactcccactggggctggtgccactcttg
ggtttccggctgttaaacagaaatacgtttttttgccacttttctacaag
ttcagtctggctgtgcggctttatgaatgctctgacaaatgcctgcagtc
aatttataagaatggagggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_194048799_194049617
seq2: B6Ng01-210N22.b_45_867

seq1  GAATTCCTTCGAAATTCTGATGTACAAGAAGAACAGTGAGTATCCGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCGAAATTCTGATGTACAAGAAGAACAGTGAGTATCCGAGGC  50

seq1  TCAGAGCCCAGTTTCATGTGTGTAGAGGGTGAGGTATTACTTCCACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCCAGTTTCATGTGTGTAGAGGGTGAGGTATTACTTCCACTTCT  100

seq1  GTGACTGTTTGGTTTTGATTCTTTCCCCTCATCTAGTTACTAGAAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTTTGGTTTTGATTCTTTCCCCTCATCTAGTTACTAGAAGCCAT  150

seq1  TGTGTGTCACTAACCAATTAAGACTTCATCTATTTTTCTCTCAAGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCACTAACCAATTAAGACTTCATCTATTTTTCTCTCAAGAGTTA  200

seq1  GTCTTGTCCCTCTTGGTTCATTTATGAATTGCTCCTGGGAGGCACCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCCCTCTTGGTTCATTTATGAATTGCTCCTGGGAGGCACCAGGG  250

seq1  GAGAGGCAGGAGAAGCCCTGTCCTGTCTGTCTTAGGTTCTACCTCCCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGGAGAAGCCCTGTCCTGTCTGTCTTAGGTTCTACCTCCCATA  300

seq1  ACTTCTAGCTCAGTGAGAGACTCTTCCAGGTGCCCAGCTAAGAGTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGCTCAGTGAGAGACTCTTCCAGGTGCCCAGCTAAGAGTCTGTG  350

seq1  AGTAACGGTCTCATGATGACCCAAGGAGACAGTATTAACTGCGTGGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACGGTCTCATGATGACCCAAGGAGACAGTATTAACTGCGTGGCATT  400

seq1  ATATATTTTCGCATTGGTCTTGGCCACAGTTACTTCTACCAAGTATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTCGCATTGGTCTTGGCCACAGTTACTTCTACCAAGTATACAA  450

seq1  TAAAGTTTGTAGCCATGCCCAAGTATAGACCTTGTCTTCCTCTTAGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGTAGCCATGCCCAAGTATAGACCTTGTCTTCCTCTTAGGTGG  500

seq1  CTTCTTGCTGAACAGAGGTGAGCTGTCCTAAGAAGTGAGGAAGTAGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTGAACAGAGGTGAGCTGTCCTAAGAAGTGAGGAAGTAGAGTG  550

seq1  ATGTCAACCTCTGGTCTGTCTCCACACCCATGTACACCTGCACTCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACCTCTGGTCTGTCTCCACACCCATGTACACCTGCACTCACACA  600

seq1  TGCACATGATGCAAACATGTGTTCACACATGCATATCACACACACAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGATGCAAACATGTGTTCACACATGCATATCACACACACAGCCA  650

seq1  ATGAAGAATCCTGCTTTTTATAATAGTAGAATTGATCGACAGGTTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAATCCTGCTTTTTATAATAGTAGAATTGATCGACAGGTTGTTGG  700

seq1  TTCAACT-AACATGTCTGGAGTGGCCCAGATGGGGCATGAGGGTGTGTGT  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAAACATGTCTGGAGTGGCCCAGATGGGGCATGAGGGTGTGTGT  750

seq1  CTA-TTGGGTGGTGTTCTGGGCTCAGTG-ATTGACAGCTTGC-TTGGGAA  796
      ||| ||||||||||||||||||||| || ||||||||||||| ||| |||
seq2  CTATTTGGGTGGTGTTCTGGGCTCATTGAATTGACAGCTTGCTTTGAGAA  800

seq1  AGCACATGCTGCGTTCATCTCAA  819
       ||||||||||| ||||||||||
seq2  TGCACATGCTGCTTTCATCTCAA  823

seq1: chr1_194197367_194198438
seq2: B6Ng01-210N22.g_67_1137 (reverse)

seq1  CACCCTCATTCCTTATAAATTGACCTCCAGGCATTTTGTCAGAGCA-TCA  49
      |||||||  | |||||||||||| || |||||| |||||||||||| |||
seq2  CACCCTCCATTCTTATAAATTGA-CTGCAGGCA-TTTGTCAGAGCATTCA  48

seq1  TAAAGCCGGCACAGCCAGAACTGAAC-TGTAGGAAAGTGGGCAAAAAACG  98
      ||||||| |||||||||| ||||||| ||||| |||||||  ||||||||
seq2  TAAAGCC-GCACAGCCAG-ACTGAACTTGTAGAAAAGTGGCAAAAAAACG  96

seq1  TATTTCTGTTTAAACAGCC-GAAACCCAAGAGTGGCCACCAGCCCCAGTG  147
      ||||||||||| ||||||| ||||||||||||||| ||||||||||||| 
seq2  TATTTCTGTTT-AACAGCCGGAAACCCAAGAGTGG-CACCAGCCCCAGT-  143

seq1  GGGAGTCAG-AATTGGTCGGTGGGGGTTATGGGGAGACAGACAAGGAGTA  196
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCAGAAATTGGTCGGTGGGGGTTATGGGGAGACAGACAAGGAGTA  193

seq1  GTTTTTATTTTGGGTGTGCTACACTTAAAATATCC-AAAAAGCTTTTCCA  245
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  GTTTTTATTTTGGGTGTGCTACACTAAAAATATCCAAAAAAGCTTTTCCA  243

seq1  G-AGCACTTTAACTTGAGCTCCTCTTCTACCACTGTGTCTCTGGGTCCCC  294
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTTTAACTTGAGCTCCTCTTCTACCACTGTGTCTCTGGGTCCCC  293

seq1  AACTCTGCTCTAATTGGTAAGTCAGCTCTCCTGCCAGTAGTTCATATACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCTCTAATTGGTAAGTCAGCTCTCCTGCCAGTAGTTCATATACT  343

seq1  GTTATCCATGTGTTGAATTTTAAAATTAGTCCAAGTGCCCTAGAGCCTCG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCATGTGTTGAATTTTAAAATTAGTCCAAGTGCCCTAGAGCCTCG  393

seq1  GGGGAATTTTCTTGGAATCCATTTGAATGCAGTAGTAAATCAGGAAAAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTTTCTTGGAATCCATTTGAATGCAGTAGTAAATCAGGAAAAAT  443

seq1  TAATGTCTTAATAATGGTGTTATTATACTTAACGATTTATTCCAAAAATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTTAATAATGGTGTTATTATACTTAACGATTTATTCCAAAAATT  493

seq1  TAAAATTCCTATGATGAAGGCTTGATAATTTTCTCCATAAATTTTCCATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCCTATGATGAAGGCTTGATAATTTTCTCCATAAATTTTCCATA  543

seq1  CACATTTTGTCAGGTGAAACATTTGAATTTTATTTAAAACTTTAATCTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTGTCAGGTGAAACATTTGAATTTTATTTAAAACTTTAATCTTC  593

seq1  TAGAAAGTATTGATTTTTATCATGTGTATCATAAGAAGTTGAGGATCAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTATTGATTTTTATCATGTGTATCATAAGAAGTTGAGGATCAGT  643

seq1  GAACTCTGGTTAATTAACAAGTTTGTGGGGGATGGGATCCACTTTCTTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGGTTAATTAACAAGTTTGTGGGGGATGGGATCCACTTTCTTCA  693

seq1  CTACACTTGTACTTTTTTAATATAGTATTTTTATTAGTTCTCTGAGAACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTGTACTTTTTTAATATAGTATTTTTATTAGTTCTCTGAGAACT  743

seq1  TCATGCGATATAATCCGATCCTTTTCACGTCCTATTTTGTGCCCCTAACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCGATATAATCCGATCCTTTTCACGTCCTATTTTGTGCCCCTAACT  793

seq1  CCACCTGGTTCCACCTTCTTATAATCAAAAAGAAAGTGTTCTACATCTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGTTCCACCTTCTTATAATCAAAAAGAAAGTGTTCTACATCTGT  843

seq1  TTGTTTTGTGGGTGAGGAGAGCACACATATGGCGGTGCCCTGTGAGGCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTGGGTGAGGAGAGCACACATATGGCGGTGCCCTGTGAGGCCA  893

seq1  GAGGACAACTTGCCCCAGAAGTCAAATGCATGTCACCAGGTTTGACATCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAACTTGCCCCAGAAGTCAAATGCATGTCACCAGGTTTGACATCA  943

seq1  AGTGTCTTGTCCTGCAGAGACACCTGGCTGCTCCTACCTTTGAAATCCGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTGTCCTGCAGAGACACCTGGCTGCTCCTACCTTTGAAATCCGT  993

seq1  TTGTCTTAAAGACAGCCTCACACATAGCCTATGCTGGCTGCTCTTCCTCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAAAGACAGCCTCACACATAGCCTATGCTGGCTGCTCTTCCTCC  1043

seq1  TAAGTGCTAGATCCTAAGTATGGAATTC  1072
      ||||||||||||||||||||||||||||
seq2  TAAGTGCTAGATCCTAAGTATGGAATTC  1071