BAC Information

Click to search

BAC

Clone NameB6Ng01-212B19
Chromosome1 (Build37)
Map Location 143,560,104 - 143,718,815
singlet/doubletdoublet
Overlap genenone
Upstream geneEG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212B19.bB6Ng01-212B19.g
ACCGA029993GA029994
length1,120873
definitionB6Ng01-212B19.b B6Ng01-212B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,560,104 - 143,561,225)(143,717,947 - 143,718,815)
sequence
gaattcacatgttgggtagactgtggagaaagaggaatactctttcattg
ctggagagagttgcaaactggtacaaccactgtggtaaccaatctcacga
tttctcagaaaattgtcaatagctctacctgaacacccagctaatatacc
caaaggttgttccaccatagcgcaaggacacatgctccactatgttctga
gcagccttatttattatagaaatgtccagacactaaaaatagccaagatg
tacctcaaatatagaatggatacagaaaatgttgtacatttacacactgg
actactaagatacgcagacctacatacagtatacatcataaaaatactca
gaagtaatgaagtgttataaaagcagcacatttttttattaacatgcaca
aaataattggtgatattggaaaaagtgatcaatttgatgaagagaaaaat
ataaatactcattaactcaacttttatggttgtaagttttttagttttta
aattaaaaaacctcatcattataaatttttactacaaaataaataaaaat
taaatgtgtaaaagataataaattaagacataagcaaaagcagaaaaatg
cattaaaattaaatgcaacttagaaagagaaataaatataacacagcatt
ttgatgagaacattctatgctctgtgtacatttttattgataataataaa
acagggtctttatatgttcagatttactaaataagaactattttgacaaa
acttattctctgattacccttataacaacagttacaatgctatggtcaca
attttgatcaaaaccaaaaaaataagaaacccaaatttgaagcaactaat
aagattggtaaacgtgtgattaagacatgtaaaaccagaataaatggcta
aaatttgaatattatagtgtaaattatctggattaaacataatgaagtct
ggatttgacatatacaaaccaacatataaacagatatgcatgaatataca
gtctgctatgcaatactaagtaagtgatttatattcatgagtcttttgat
gttcagcagaaccataggtgttattatattggcagtacagtggtggtcag
aagcagttctataaaatagc
gaattcacaagggtaggagaggtgcgcacaagaaagaacttagaggtgaa
tgagatggatatatgaggtaaaaatacaaaagaatcaatccaatacaaat
attattttgaaaaaataatgtattgtgaattggatactattaaggtcaca
tgtcccttactaatctatccattttagtattgtgtacaaacattagggat
tactttttagaaatatattgttctacctacaaaatgccatatgaaatatg
agacataatctatctaatgtttattagttaaaaatttaaaagtgataaaa
gaaaaaaatgcaaactgtacaaaggaaaaatagagcttaataataatctc
atttaggtgtttcgtgtcataactaaggcacggagctgagacctttcaaa
tgcagtttctgtcctccggatccaggcttcagctcttttgttatatcaga
atggtttttttcttcctcttcctcttcctcttcctcttcctctctctctc
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctctctttctttctctctttcttt
ctttctttctttctctcatcagaacctgagagtagcaattcctatgtagc
caaagtgacattgaactccagatcctctctaatatgggtagcagacaact
ggtacaaatgtaagatatgagctcttaattgctgctctagttaccatgat
gcctgcctgctgctacacttcctgttatgaccatgatggactcttatttc
tctggaaatttaagtacaaatgaactccttctctcagaggaggaggaaga
ggaggaggagaaggaggaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143560104_143561225
seq2: B6Ng01-212B19.b_43_1162

seq1  GAATTCACATGTTGGGTAGACTGTGGAGAAAGAGGAATACTCTTTCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTTGGGTAGACTGTGGAGAAAGAGGAATACTCTTTCATTG  50

seq1  CTGGAGAGAGTTGCAAACTGGTACAACCACTGTGGTAACCAATCTCACGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGAGTTGCAAACTGGTACAACCACTGTGGTAACCAATCTCACGA  100

seq1  TTTCTCAGAAAATTGTCAATAGCTCTACCTGAACACCCAGCTAATATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGAAAATTGTCAATAGCTCTACCTGAACACCCAGCTAATATACC  150

seq1  CAAAGGTTGTTCCACCATAGCGCAAGGACACATGCTCCACTATGTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGTTCCACCATAGCGCAAGGACACATGCTCCACTATGTTCTGA  200

seq1  GCAGCCTTATTTATTATAGAAATGTCCAGACACTAAAAATAGCCAAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTATTTATTATAGAAATGTCCAGACACTAAAAATAGCCAAGATG  250

seq1  TACCTCAAATATAGAATGGATACAGAAAATGTTGTACATTTACACACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAAATATAGAATGGATACAGAAAATGTTGTACATTTACACACTGG  300

seq1  ACTACTAAGATACGCAGACCTACATACAGTATACATCATAAAAATACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAAGATACGCAGACCTACATACAGTATACATCATAAAAATACTCA  350

seq1  GAAGTAATGAAGTGTTATAAAAGCAGCACATTTTTTTATTAACATGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATGAAGTGTTATAAAAGCAGCACATTTTTTTATTAACATGCACA  400

seq1  AAATAATTGGTGATATTGGAAAAAGTGATCAATTTGATGAAGAGAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTGGTGATATTGGAAAAAGTGATCAATTTGATGAAGAGAAAAAT  450

seq1  ATAAATACTCATTAACTCAACTTTTATGGTTGTAAGTTTTTTAGTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACTCATTAACTCAACTTTTATGGTTGTAAGTTTTTTAGTTTTTA  500

seq1  AATTAAAAAACCTCATCATTATAAATTTTTACTACAAAATAAATAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAACCTCATCATTATAAATTTTTACTACAAAATAAATAAAAAT  550

seq1  TAAATGTGTAAAAGATAATAAATTAAGACATAAGCAAAAGCAGAAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGTAAAAGATAATAAATTAAGACATAAGCAAAAGCAGAAAAATG  600

seq1  CATTAAAATTAAATGCAACTTAGAAAGAGAAATAAATATAACACAGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATTAAATGCAACTTAGAAAGAGAAATAAATATAACACAGCATT  650

seq1  TTGATGAGAACATTCTATGCTCTGTGTACATTTTTATTGATAATAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAGAACATTCTATGCTCTGTGTACATTTTTATTGATAATAATAAA  700

seq1  ACAGGGTCTTTATATGTTCAGATTTACTAAATAAGAACTATTTTGACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTTTATATGTTCAGATTTACTAAATAAGAACTATTTTGACAAA  750

seq1  ACTTATTCTCTGATTACCCTTATAACAACAGTTACAATGCTATGGTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCTCTGATTACCCTTATAACAACAGTTACAATGCTATGGTCACA  800

seq1  ATTTTGATCAAAACCAAAAAAATAAGAAACCCAAATTTGAAGCAACTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATCAAAACCAAAAAAATAAGAAACCCAAATTTGAAGCAACTAAT  850

seq1  AAGATTGGTAAACGTGTGATTAAGACATGTAAAACCAGAATAAATGGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGGTAAACGTGTGATTAAGACATGTAAAACCAGAATAAATGGCTA  900

seq1  AAATTTGAATATTATAGTGTAAATTATCTGGATTAAACATAATGAAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAATATTATAGTGTAAATTATCTGGATTAAACATAATGAAGTCT  950

seq1  GGATTTGACATATACAAACCAACATATAAACAGATATGCATGAATATACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGACATATACAAACCAACATATAAACAGATATGCATGAATATACA  1000

seq1  GTCTGCTATGCAATACTAAGTAAGTGATTTATATTCATGAGTCTTTTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCTGCTATGCAATACTAAGTAAGTGATTTATATTCATGAGTCTTTTGA-  1049

seq1  TTGTTCAGCAGAACCCAATAAGTGTTATTATATTTGCAGTACAGTGGTGG  1100
       ||||||||||||||  ||| ||||||||||||| |||||||||||||||
seq2  -TGTTCAGCAGAACC--ATAGGTGTTATTATATTGGCAGTACAGTGGTGG  1096

seq1  TCAG-AGCAGTTCTAT-AAATAGC  1122
      |||| ||||||||||| |||||||
seq2  TCAGAAGCAGTTCTATAAAATAGC  1120

seq1: chr1_143717947_143718815
seq2: B6Ng01-212B19.g_69_941 (reverse)

seq1  CCTCCTCCTCCTTCTCCTCCTCCTCTTCCTCCTCCTCCTGAGAGAA-GAG  49
      | |||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CATCCTCCTCCTTCTCCTCCTCCTCTTCCTCCTCCT-CTGAGAGAAGGAG  49

seq1  TTCATTTGTACTTAAATTTCCAGAGAAATAAGAGTCCATCATGGTCATAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTACTTAAATTTCCAGAGAAATAAGAGTCCATCATGGTCATAA  99

seq1  CAGGAAGTGTAGCAGCAGGCAGGCATCATGGTAACTAGAGCAGCAATTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTGTAGCAGCAGGCAGGCATCATGGTAACTAGAGCAGCAATTAA  149

seq1  GAGCTCATATCTTACATTTGTACCAGTTGTCTGCTACCCATATTAGAGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATATCTTACATTTGTACCAGTTGTCTGCTACCCATATTAGAGAG  199

seq1  GATCTGGAGTTCAATGTCACTTTGGCTACATAGGAATTGCTACTCTCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAGTTCAATGTCACTTTGGCTACATAGGAATTGCTACTCTCAGG  249

seq1  TTCTGATGAGAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAG----  295
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  TTCTGATGAGAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAGAGAA  299

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  349

seq1  AAAGAAAGAAAGAAAGAAAGAAAGGAGAGAGAGAGGAAGAGGAAGAGGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGGAGAGAGAGAGGAAGAGGAAGAGGAA  399

seq1  GAGGAAGAGGAAGAAAAAAACCATTCTGATATAACAAAAGAGCTGAAGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGAAGAAAAAAACCATTCTGATATAACAAAAGAGCTGAAGCC  449

seq1  TGGATCCGGAGGACAGAAACTGCATTTGAAAGGTCTCAGCTCCGTGCCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCGGAGGACAGAAACTGCATTTGAAAGGTCTCAGCTCCGTGCCTT  499

seq1  AGTTATGACACGAAACACCTAAATGAGATTATTATTAAGCTCTATTTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGACACGAAACACCTAAATGAGATTATTATTAAGCTCTATTTTTC  549

seq1  CTTTGTACAGTTTGCATTTTTTTCTTTTATCACTTTTAAATTTTTAACTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTACAGTTTGCATTTTTTTCTTTTATCACTTTTAAATTTTTAACTA  599

seq1  ATAAACATTAGATAGATTATGTCTCATATTTCATATGGCATTTTGTAGGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTAGATAGATTATGTCTCATATTTCATATGGCATTTTGTAGGT  649

seq1  AGAACAATATATTTCTAAAAAGTAATCCCTAATGTTTGTACACAATACTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATATATTTCTAAAAAGTAATCCCTAATGTTTGTACACAATACTA  699

seq1  AAATGGATAGATTAGTAAGGGACATGTGACCTTAATAGTATCCAATTCAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATAGATTAGTAAGGGACATGTGACCTTAATAGTATCCAATTCAC  749

seq1  AATACATTATTTTTTCAAAATAATATTTGTATTGGATTGATTCTTTTGTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTATTTTTTCAAAATAATATTTGTATTGGATTGATTCTTTTGTA  799

seq1  TTTTTACCTCATATATCCATCTCATTCACCTCTAAGTTCTTTCTTGTGCG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCTCATATATCCATCTCATTCACCTCTAAGTTCTTTCTTGTGCG  849

seq1  CACCTCTCCTACCCTTGTGAATTC  869
      ||||||||||||||||||||||||
seq2  CACCTCTCCTACCCTTGTGAATTC  873