BAC Information

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BAC

Clone NameB6Ng01-212G13
Chromosome1 (Build37)
Map Location 131,609,043 - 131,744,836
singlet/doubletdoublet
Overlap geneThsd7b, LOC100042745, LOC100042740
Upstream geneLOC100042732
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212G13.bB6Ng01-212G13.g
ACCGA030212GA030213
length1,2571,126
definitionB6Ng01-212G13.b B6Ng01-212G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,743,564 - 131,744,836)(131,609,043 - 131,610,177)
sequence
gaattctgaccaccaggcttgatgaacccttctttgccttatgaaccatt
tcaccaccttaagttttgagacagggtatcacagtaaatttagaactcac
acattagactggactggcttaccagtgagtttctgggatcatggtcttgg
tctctccagctctggaattataggagcatatatatagccttttatgtcac
tgctaaagatttgaactcaggtccttgtgatatgcagcaagcactctgcc
cactgaagcatgcccctggcatgttatttttctttaaaagtccctatttg
aaggtgactattcttaaaagacagaaactacatagagcaatcttctaaga
ggttatcagaaattgggaaaatgttttaagttccaaagcaagatagtggt
aagtcatttacattatacaattctacccagcaatgcttatttttagacat
acacactgtcacttttcatgatgatgacatttcatctccaaagcctcctt
gagaagtgtttcctgtgtgagacatgagaaaactagagaactgggggctt
agaaggtagatttagtgacacacacctattatgcttagaaacaaacctca
aaaccactgtgatagatcctaaatcctttgctgccactgctagaaaggag
tatagaaatctgaatagtggtggatattgaatttctgataacactgtggc
ccagggtagactcccctctcttttcaataccagtggcctgctttttcctt
ccagggtagaaggtattcttttggtcagtttgatgtatttggaataagcc
tggtcctaccattgcaactcctggcatgggtaatagatgtaaactcatgc
aatggcagggtcaaagatgacacccccaagtagtgcattaagcactgact
cctagaactttgcagccattttaaggaatagttcttgtgagcctatgctt
ccttaagcctaaaccatgaatcatatcctcatgtataggagacctgaatt
tgaagccagcactaggaaggaggccaagtgtcatcatgaaccacaaatag
atgtcttgtctgagcaaaatacaaaccttaagaggtttccagtatgtaga
attgggccctcttttcagtcataagctactgtacaagaagaataaaaatt
taaatgctcgattgaaggcaattacagggtctactggaaactattccttg
tcgccatgtactatgagcagtttcaagtctgaaatgtgcactctcaaaat
gggtata
gaattccagtaaattctcatgatagaaagcaaggcctacctccccagtgt
tgtcctctagccctttaatacagaccatggcatgccagcaccacacacat
agatacacacacacacacacacacacacacacacacacacaccacacact
taaatacacagagacatgcaagcacagacattcaaataataaataaaatt
taaaataaatttaaattcagagatgaagttaaaattaacataaaatttag
gaaaagcagaaatcataactcatatgagctacatataaatcacctttaaa
ggtgtaagatgtcatctttacttacactgaagcaaatgcaaaactccatg
gatagacttcctaagaaatgtagccacagattcagcaatgtaccaggtgc
aaaggaatcactgaacatgttgccagtagagtttggcagtatccccagac
ttgtgcattttgatgtggcattccctctcatagctacttacccagaaagc
acaccttcaacagcacaaatttaaaaaaagctacgcgctaagtcgtggtg
ccattgtttgtgatggcaaaataatgctagccaaatgtttgtacatcaga
aaatgcatgatatgagatgggttcaataacatgatacaggagcacagtga
tgtgccttcaaggagaagaggatgaagaaaataccatggggctgagagag
attgttttttagggaaaaacagaaggcttagcatggtaacgtaatgtgcc
caatttaggcaagcaaaattaaagaacaaagagaagcatagtacaagtgg
atattttctctattaagaaaggaactgttaggaaagataaatggaattgg
cagtggggtgtgtaaagacatctttctatacatcttgtttttattgagtg
ttaatgctactaaaattataaaataaatgtaaagaaaatcttcgatcagt
atgggatgtgtagcaataaaagttcctgcttcccctcaaaaaaaaaaaaa
aaggaaaggaggagggaagaaggattgcaataattcttttaagtgcattt
aaatggaacactataaaattgaggattacaggggtagatcaacagtatca
attacttggcccttaacgcctgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131743564_131744836
seq2: B6Ng01-212G13.b_46_1302 (reverse)

seq1  TATAACCATTTTGAGGATGCACAATATCAGACTTTTTGAAGCTGGCTTCT  50
      |||| ||||||||||  ||||| || ||||||   ||||| || |||  |
seq2  TATACCCATTTTGAGAGTGCAC-ATTTCAGAC---TTGAAACT-GCTCAT  45

seq1  ATGTAACCATGACCGACCAGGATGAGTTCTCAGTTAGACACTGTAAATTG  100
      | |||  ||||  |||| ||||  ||||  ||| ||||| |||| |||||
seq2  A-GTA--CATG-GCGACAAGGAATAGTTTCCAG-TAGACCCTGT-AATTG  89

seq1  CC-TCATATGAGCATTTAATATTTTTA-TCTTC-TGTACAGTAGGCTTAT  147
      || |||   |||||||||| ||||||| ||||| ||||||||| ||||||
seq2  CCTTCAATCGAGCATTTAA-ATTTTTATTCTTCTTGTACAGTA-GCTTAT  137

seq1  GACTG-ACAGAGGCCCCAATTCCTTACATACTGGAAA-CTC-TAAGGTTT  194
      ||||| | ||||| ||||||||  ||||||||||||| ||| ||||||||
seq2  GACTGAAAAGAGGGCCCAATTC--TACATACTGGAAACCTCTTAAGGTTT  185

seq1  GTATTTTTGCTTCAGACAAGACATCTATTTGTGGTTCCATGATGACACCT  244
      ||| |||||| ||||||||||||||||||||||||| |||||||||| ||
seq2  GTA-TTTTGC-TCAGACAAGACATCTATTTGTGGTT-CATGATGACA-CT  231

seq1  TGGCCTCCCTTCCCTAGTGCTGGCTTCAAATTCAGGTCTCCTTATACATG  294
      ||||||||  | ||||||||||||||||||||||||||||| ||||||||
seq2  TGGCCTCC--TTCCTAGTGCTGGCTTCAAATTCAGGTCTCC-TATACATG  278

seq1  AGGATATGATTCATGGTTTAGGCTTAAGGAAGCATAGGCTCACAAGAACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGATTCATGGTTTAGGCTTAAGGAAGCATAGGCTCACAAGAACT  328

seq1  ATTCCTTAAAATGGCTGCAAAGTTCTAGGAGTCAGTGCTTAATGCACTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTAAAATGGCTGCAAAGTTCTAGGAGTCAGTGCTTAATGCACTAC  378

seq1  TTGGGGGTGTCATCTTTGACCCTGCCATTGCATGAGTTTACATCTATTAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTGTCATCTTTGACCCTGCCATTGCATGAGTTTACATCTATTAC  428

seq1  CCATGCCAGGAGTTGCAATGGTAGGACCAGGCTTATTCCAAATACATCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAGGAGTTGCAATGGTAGGACCAGGCTTATTCCAAATACATCAA  478

seq1  ACTGACCAAAAGAATACCTTCTACCCTGGAAGGAAAAAGCAGGCCACTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCAAAAGAATACCTTCTACCCTGGAAGGAAAAAGCAGGCCACTGG  528

seq1  TATTGAAAAGAGAGGGGAGTCTACCCTGGGCCACAGTGTTATCAGAAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAAGAGAGGGGAGTCTACCCTGGGCCACAGTGTTATCAGAAATT  578

seq1  CAATATCCACCACTATTCAGATTTCTATACTCCTTTCTAGCAGTGGCAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCCACCACTATTCAGATTTCTATACTCCTTTCTAGCAGTGGCAGC  628

seq1  AAAGGATTTAGGATCTATCACAGTGGTTTTGAGGTTTGTTTCTAAGCATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTTAGGATCTATCACAGTGGTTTTGAGGTTTGTTTCTAAGCATA  678

seq1  ATAGGTGTGTGTCACTAAATCTACCTTCTAAGCCCCCAGTTCTCTAGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTGTGTCACTAAATCTACCTTCTAAGCCCCCAGTTCTCTAGTTT  728

seq1  TCTCATGTCTCACACAGGAAACACTTCTCAAGGAGGCTTTGGAGATGAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTCTCACACAGGAAACACTTCTCAAGGAGGCTTTGGAGATGAAA  778

seq1  TGTCATCATCATGAAAAGTGACAGTGTGTATGTCTAAAAATAAGCATTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCATCATGAAAAGTGACAGTGTGTATGTCTAAAAATAAGCATTGC  828

seq1  TGGGTAGAATTGTATAATGTAAATGACTTACCACTATCTTGCTTTGGAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAATTGTATAATGTAAATGACTTACCACTATCTTGCTTTGGAAC  878

seq1  TTAAAACATTTTCCCAATTTCTGATAACCTCTTAGAAGATTGCTCTATGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATTTTCCCAATTTCTGATAACCTCTTAGAAGATTGCTCTATGT  928

seq1  AGTTTCTGTCTTTTAAGAATAGTCACCTTCAAATAGGGACTTTTAAAGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGTCTTTTAAGAATAGTCACCTTCAAATAGGGACTTTTAAAGAA  978

seq1  AAATAACATGCCAGGGGCATGCTTCAGTGGGCAGAGTGCTTGCTGCATAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACATGCCAGGGGCATGCTTCAGTGGGCAGAGTGCTTGCTGCATAT  1028

seq1  CACAAGGACCTGAGTTCAAATCTTTAGCAGTGACATAAAAGGCTATATAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGACCTGAGTTCAAATCTTTAGCAGTGACATAAAAGGCTATATAT  1078

seq1  ATGCTCCTATAATTCCAGAGCTGGAGAGACCAAGACCATGATCCCAGAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTATAATTCCAGAGCTGGAGAGACCAAGACCATGATCCCAGAAA  1128

seq1  CTCACTGGTAAGCCAGTCCAGTCTAATGTGTGAGTTCTAAATTTACTGTG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGTAAGCCAGTCCAGTCTAATGTGTGAGTTCTAAATTTACTGTG  1178

seq1  ATACCCTGTCTCAAAACTTAAGGTGGTGAAATGGTTCATAAGGCAAAGAA  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGTCTCAAAACTTAAGGTGGTGAAATGGTTCATAAGGCAAAGAA  1228

seq1  GGGTTCATCAAGCCTGGTGGTCAGAATTC  1273
      |||||||||||||||||||||||||||||
seq2  GGGTTCATCAAGCCTGGTGGTCAGAATTC  1257

seq1: chr1_131609043_131610177
seq2: B6Ng01-212G13.g_64_1189

seq1  GAATTCCAGTAAATTCTCATGATAGAAAGCAAGGCCTACCTCCCCAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAAATTCTCATGATAGAAAGCAAGGCCTACCTCCCCAGTGT  50

seq1  TGTCCTCTAGCCCTTTAATACAGACCATGGCATGCCAGCACCACACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTAGCCCTTTAATACAGACCATGGCATGCCAGCACCACACACAT  100

seq1  AGATACACACACACACACACACACACACACACACACACACACCACACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACACACACACACACACACACACACACACACACACACCACACACT  150

seq1  TAAATACACAGAGACATGCAAGCACAGACATTCAAATAATAAATAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACACAGAGACATGCAAGCACAGACATTCAAATAATAAATAAAATT  200

seq1  TAAAATAAATTTAAATTCAGAGATGAAGTTAAAATTAACATAAAATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATTTAAATTCAGAGATGAAGTTAAAATTAACATAAAATTTAG  250

seq1  GAAAAGCAGAAATCATAACTCATATGAGCTACATATAAATCACCTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGAAATCATAACTCATATGAGCTACATATAAATCACCTTTAAA  300

seq1  GGTGTAAGATGTCATCTTTACTTACACTGAAGCAAATGCAAAACTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAGATGTCATCTTTACTTACACTGAAGCAAATGCAAAACTCCATG  350

seq1  GATAGACTTCCTAAGAAATGTAGCCACAGATTCAGCAATGTACCAGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACTTCCTAAGAAATGTAGCCACAGATTCAGCAATGTACCAGGTGC  400

seq1  AAAGGAATCACTGAACATGTTGCCAGTAGAGTTTGGCAGTATCCCCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCACTGAACATGTTGCCAGTAGAGTTTGGCAGTATCCCCAGAC  450

seq1  TTGTGCATTTTGATGTGGCATTCCCTCTCATAGCTACTTACCCAGAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATTTTGATGTGGCATTCCCTCTCATAGCTACTTACCCAGAAAGC  500

seq1  ACACCTTCAACAGCACAAATTTAAAAAAAGCTACGCGCTAAGTCGTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCAACAGCACAAATTTAAAAAAAGCTACGCGCTAAGTCGTGGTG  550

seq1  CCATTGTTTGTGATGGCAAAATAATGCTAGCCAAATGTTTGTACATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTGTGATGGCAAAATAATGCTAGCCAAATGTTTGTACATCAGA  600

seq1  AAATGCATGATATGAGATGGGTTCAATAACATGATACAGGAGCACAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATGATATGAGATGGGTTCAATAACATGATACAGGAGCACAGTGA  650

seq1  TGTGCCTTCAAGGAGAAGAGGATGAAGAAAATACCATGGGGCTGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTCAAGGAGAAGAGGATGAAGAAAATACCATGGGGCTGAGAGAG  700

seq1  ATTGTTTTTTAGGGAAAAACAGAAGGCTTAGCATGGTAACGTAATGTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTTAGGGAAAAACAGAAGGCTTAGCATGGTAACGTAATGTGCC  750

seq1  CAATTTAGGCAAGCAAAATTAAAGAACAAAGAGAAGCATAGTACAAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAGGCAAGCAAAATTAAAGAACAAAGAGAAGCATAGTACAAGTGG  800

seq1  ATATTTTCTCTATTAAGAAAGGAACTGTTAGGAAAGATAAATGGAATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTCTATTAAGAAAGGAACTGTTAGGAAAGATAAATGGAATTGG  850

seq1  CAGTGGGGTGTGTAAAGACATCTTTCTATACATCTTGTTTTTATTGAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGTGTGTAAAGACATCTTTCTATACATCTTGTTTTTATTGAGTG  900

seq1  TTAATGCTACTAAAATTATAAAATAAATGTAAAGAAAATCTTCGATCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTACTAAAATTATAAAATAAATGTAAAGAAAATCTTCGATCAGT  950

seq1  ATGGGATGTGTAGCAATAAAAGTTCCTGCTTCCCCTCAAAAAAAAAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGTGTAGCAATAAAAGTTCCTGCTTCCCCTCAAAAAAAAAAAAA  1000

seq1  AAGGGAAAGGAGGGAGGGAGGAAGGGATGAAATAAATCATTTTAAGTGCA  1050
      || |||||||| ||||||| |||||  || ||||| || |||||||||||
seq2  AA-GGAAAGGA-GGAGGGAAGAAGGATTGCAATAATTC-TTTTAAGTGCA  1047

seq1  TTTAAAATGAACAACTATAAAATTAGAGGATTTACAGTGGGTAGATCAAC  1100
      ||||||  |||| ||||||||||| ||||| |||||| ||||||||||||
seq2  TTTAAATGGAAC-ACTATAAAATT-GAGGA-TTACAG-GGGTAGATCAAC  1093

seq1  AGTATTCAAATTACAT-GCCCTTAA-GCCTTGGTGTG  1135
      |||||   |||||| | |||||||| ||||  |||||
seq2  AGTAT--CAATTACTTGGCCCTTAACGCCT--GTGTG  1126