BAC Information

Click to search

BAC

Clone NameB6Ng01-212K17
Chromosome1 (Build37)
Map Location 145,652,876 - 145,800,490
singlet/doubletdoublet
Overlap geneUchl5
Upstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2, Trove2
Downstream geneRgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18, LOC667877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212K17.bB6Ng01-212K17.g
ACCGA030408GA030409
length1,170617
definitionB6Ng01-212K17.b B6Ng01-212K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,652,876 - 145,654,051)(145,799,876 - 145,800,490)
sequence
gaattctcatttatggtttgttttcaaagatcagcagaattggtgtcacc
tgagaatttgttttattactaaattatcatccgacatttaaatagggacc
ccggttggcgtacatattgaaaagcactgcttgagaacaagtgtctttga
catctattgaaacttcactgtatgttacctgtgtgactttggtcaacttt
gataatgcctatgagccttttcttctttactttggttactttagtaacaa
atagaattactgcatttaatattgtaattatgagatcatgttgaaaaaca
tttaggtctaataaatttactaatactatatacatatatgtacatatatt
actatatacatatatgtacatatatgtatactgatacacacacatataca
tatgtattcttttagtgatattttattaagctcatcagaactatgttaaa
ttcatttacttcaatataatggaagtataaataattttattagacttagt
ttgagtaagaaatggacaaatatgtatggttgtttagctttatagaatga
atatattttaattattataatcagtacatttgatcttctgtaaaccaaaa
atgatcatctctactgagggtaaataagcttacggttcagcagaagttgc
aagtctcaagttataaactgccatgctctcagtgtctcagaacacactcg
ggtatttcagtgcttttcatttgtttattcagtgatacctttcctttctg
tgttgccaggccggctgctctcttacatcacagtgtcagtaactaggact
acagtcccatcacacaggctctagtagcgtgaacgatgcataagccttat
ccttgcgaataccattggatacattgtactttagtatgatctaaaacagt
ctttgaggagttcataatgtgctgtctttaatttttaggcaaaagaaaac
agaatgcaaagaaagctcagaaactaagtgaagaggattatttgggacgt
gtgtacagtgtgctgccacttaatttcatggacaccattaaataaaagga
cttttggacacatcttattgactcagtgcacgtttggcatagtaccaggt
tgtctttgttccttatgcatggagtaattctttctactgcatcatggcca
ggtagtgcatattaaataaa
gaattcttctccttgtctacggccctctttcctctatttaaaatctatac
agcaaagcaaaccttgggcagcaactagtagacaggggtgtctcttctaa
aaacaaccagtcccattctctgggactcagttctgaagttctaggaaaga
gactctgagtttggatcatgttactctccctgggtaggagttggagatag
tcgctaaagaactattcccaagggtcaacttctgtaactttatgaacagt
gagatcacttggcagttcccagaaaaaaggatggcagaacaggccatgca
gtgagaggccgatgtttacacactgatatgttttcatgatactgagctca
tgaaacatttagagtgtaaactttgttctcaattgctacatgaaatgaaa
agaaaaagaacaggaggaggaggtggtggtggtggtggagcaataccagg
ctacagacttggaagaatcaaagctcctattttcccctcactttttggct
tccctatttctggcttcttctgtgcttcaataacactgtgtgtctgcctg
tgagcactgggcatcacagtaccacagttattttccatgagtgttccctt
gagaggacagtgttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_145652876_145654051
seq2: B6Ng01-212K17.b_45_1214

seq1  GAATTCTCATTTATGGTTTGTTTTCAAAGATCAGCAGAATTGGTGTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTATGGTTTGTTTTCAAAGATCAGCAGAATTGGTGTCACC  50

seq1  TGAGAATTTGTTTTATTACTAAATTATCATCCGACATTTAAATAGGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTGTTTTATTACTAAATTATCATCCGACATTTAAATAGGGACC  100

seq1  CCGGTTGGCGTACATATTGAAAAGCACTGCTTGAGAACAAGTGTCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTGGCGTACATATTGAAAAGCACTGCTTGAGAACAAGTGTCTTTGA  150

seq1  CATCTATTGAAACTTCACTGTATGTTACCTGTGTGACTTTGGTCAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTGAAACTTCACTGTATGTTACCTGTGTGACTTTGGTCAACTTT  200

seq1  GATAATGCCTATGAGCCTTTTCTTCTTTACTTTGGTTACTTTAGTAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGCCTATGAGCCTTTTCTTCTTTACTTTGGTTACTTTAGTAACAA  250

seq1  ATAGAATTACTGCATTTAATATTGTAATTATGAGATCATGTTGAAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTACTGCATTTAATATTGTAATTATGAGATCATGTTGAAAAACA  300

seq1  TTTAGGTCTAATAAATTTACTAATACTATATACATATATGTACATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCTAATAAATTTACTAATACTATATACATATATGTACATATATT  350

seq1  ACTATATACATATATGTACATATATGTATACTGATACACACACATATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATACATATATGTACATATATGTATACTGATACACACACATATACA  400

seq1  TATGTATTCTTTTAGTGATATTTTATTAAGCTCATCAGAACTATGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCTTTTAGTGATATTTTATTAAGCTCATCAGAACTATGTTAAA  450

seq1  TTCATTTACTTCAATATAATGGAAGTATAAATAATTTTATTAGACTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTACTTCAATATAATGGAAGTATAAATAATTTTATTAGACTTAGT  500

seq1  TTGAGTAAGAAATGGACAAATATGTATGGTTGTTTAGCTTTATAGAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAGAAATGGACAAATATGTATGGTTGTTTAGCTTTATAGAATGA  550

seq1  ATATATTTTAATTATTATAATCAGTACATTTGATCTTCTGTAAACCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTAATTATTATAATCAGTACATTTGATCTTCTGTAAACCAAAA  600

seq1  ATGATCATCTCTACTGAGGGTAAATAAGCTTACGGTTCAGCAGAAGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATCTCTACTGAGGGTAAATAAGCTTACGGTTCAGCAGAAGTTGC  650

seq1  AAGTCTCAAGTTATAAACTGCCATGCTCTCAGTGTCTCAGAACACACTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAAGTTATAAACTGCCATGCTCTCAGTGTCTCAGAACACACTCG  700

seq1  GGTATTTCAGTGCTTTTCATTTGTTTATTCAGTGATACCTTTCCTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCAGTGCTTTTCATTTGTTTATTCAGTGATACCTTTCCTTTCTG  750

seq1  TGTTGCCAGGCCGGCTGCTCTCTTACATCACAGTGTCAGTAACTAGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCAGGCCGGCTGCTCTCTTACATCACAGTGTCAGTAACTAGGACT  800

seq1  ACAGTCCCATCACACAGGCTCTAGTAGCGTGAACGATGCATAAGCCTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCATCACACAGGCTCTAGTAGCGTGAACGATGCATAAGCCTTAT  850

seq1  CCTTGCGAATACCATTGGATACATTGTACTTTAGTATGATCTAAAACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCGAATACCATTGGATACATTGTACTTTAGTATGATCTAAAACAGT  900

seq1  CTTTGAGGAGTTCATAATGTGCTGTCTTTAATTTTTAGGCAAAAGAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTGAGGAGTTCATAATGTGCTGTCTTTAATTTTTAGGCAAAAG-AAAA  949

seq1  CAGAATGCAAAGAAAGCTCAGGAAACTAAGTGAAGAGGA-TATTT-GGAC  998
      |||||||||||||||||||| |||||||||||||||||| ||||| ||||
seq2  CAGAATGCAAAGAAAGCTCA-GAAACTAAGTGAAGAGGATTATTTGGGAC  998

seq1  GTGTGTACAGTGTGCTG-CACTTAATTTCATGGACACCATTAAATAAAAG  1047
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGTGTACAGTGTGCTGCCACTTAATTTCATGGACACCATTAAATAAAAG  1048

seq1  GAACTTTGGACAACATCTTAATTGACTCAGTGCACGTTTGGCATAGTACC  1097
      ||  ||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GACTTTTGGAC-ACATCTT-ATTGACTCAGTGCACGTTTGGCATAGTACC  1096

seq1  AGTCTGTC-TTGTCCTTTATGCATGGAGTTAAAATTCTTTCCCTACCTGC  1146
      ||  |||| |||| | |||||||||||||   ||||||||  ||| ||||
seq2  AGGTTGTCTTTGTTCCTTATGCATGGAGT---AATTCTTT--CTA-CTGC  1140

seq1  ATCATGGGCATGTAGTGCATATTAAATAAA  1176
      ||||||| || |||||||||||||||||||
seq2  ATCATGGCCAGGTAGTGCATATTAAATAAA  1170

seq1: chr1_145799876_145800490
seq2: B6Ng01-212K17.g_68_684 (reverse)

seq1  GAGAACACTGTCCTCTC-AGGGAACACTCATGG-AAATAACTGTGGTACT  48
      || |||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  GAAAACACTGTCCTCTCAAGGGAACACTCATGGAAAATAACTGTGGTACT  50

seq1  GTGATGCCCAGTGCTCACAGGCAGACACACAGTGTTATTGGAGCACAGAA  98
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGATGCCCAGTGCTCACAGGCAGACACACAGTGTTATTGAAGCACAGAA  100

seq1  GAAGCCAGAAATAGGGAAGCCAAAAAGTGAGGGGAAAATAGGAGCTTTGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGAAATAGGGAAGCCAAAAAGTGAGGGGAAAATAGGAGCTTTGA  150

seq1  TTCTTCCAAGTCTGTAGCCTGGTATTGCTCCACCACCACCACCACCTCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAAGTCTGTAGCCTGGTATTGCTCCACCACCACCACCACCTCCT  200

seq1  CCTCCTGTTCTTTTTCTTTTCATTTCATGTAGCAATTGAGAACAAAGTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTTCTTTTTCTTTTCATTTCATGTAGCAATTGAGAACAAAGTTT  250

seq1  ACACTCTAAATGTTTCATGAGCTCAGTATCATGAAAACATATCAGTGTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTAAATGTTTCATGAGCTCAGTATCATGAAAACATATCAGTGTGT  300

seq1  AAACATCGGCCTCTCACTGCATGGCCTGTTCTGCCATCCTTTTTTCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCGGCCTCTCACTGCATGGCCTGTTCTGCCATCCTTTTTTCTGGG  350

seq1  AACTGCCAAGTGATCTCACTGTTCATAAAGTTACAGAAGTTGACCCTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCAAGTGATCTCACTGTTCATAAAGTTACAGAAGTTGACCCTTGG  400

seq1  GAATAGTTCTTTAGCGACTATCTCCAACTCCTACCCAGGGAGAGTAACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTCTTTAGCGACTATCTCCAACTCCTACCCAGGGAGAGTAACAT  450

seq1  GATCCAAACTCAGAGTCTCTTTCCTAGAACTTCAGAACTGAGTCCCAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAACTCAGAGTCTCTTTCCTAGAACTTCAGAACTGAGTCCCAGAG  500

seq1  AATGGGACTGGTTGTTTTTAGAAGAGACACCCCTGTCTACTAGTTGCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACTGGTTGTTTTTAGAAGAGACACCCCTGTCTACTAGTTGCTGC  550

seq1  CCAAGGTTTGCTTTGCTGTATAGATTTTAAATAGAGGAAAGAGGGCCGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTTGCTTTGCTGTATAGATTTTAAATAGAGGAAAGAGGGCCGTA  600

seq1  GACAAGGAGAAGAATTC  615
      |||||||||||||||||
seq2  GACAAGGAGAAGAATTC  617