BAC Information

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BAC

Clone NameB6Ng01-212K23
Chromosome1 (Build37)
Map Location 113,773,926 - 113,977,874
singlet/doubletdoublet
Overlap geneLOC547247
Upstream geneCdh19, EG666578, Dsel
Downstream geneEG626897, LOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212K23.bB6Ng01-212K23.g
ACCGA030420GA030421
length1,154733
definitionB6Ng01-212K23.b B6Ng01-212K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,773,926 - 113,775,073)(113,977,316 - 113,977,874)
sequence
gaattcctctgcatatctataaagatatataaagacatagcattttgtgt
attttttttaaagtttcttgggtgaagtgaacgtagaagctttataccaa
tccttaatagtgtaactgttaagacactaacagatagacactcaaaagtt
tatataattgttgtccatgacaacctagagtacatctctgccaatccatc
ctgggatatccagaatgacaatttagtgctgcagagccacttggtaacat
tggaagctgcccataatcttcctgtcttcatgacccacttggtagcaaag
cactctaatggactaccacaaataataacctgagataacaaaggagaggc
tcatcatagattttggacatttattcaaaatgaatgagtataatttttat
tcttcacagcataaggggattacctggcttcaatacacattttctggaat
tactgcatattcatccaatatttgaaagaacctactatcaaattttatat
tttcattatattttatagttcttgagagaggggttgaagaataaaaaggt
atagcatctccattactgtttcctattcaaaaatcccatggaagtcaagc
acactggaagtgggtaggacaccaaagatcacaagttgtcctatgtatta
actcatgcatcatcttggatatgcatgattgtttccatcttatatatagg
taagtggaaagaaagtgcttgtcagtttgtttagagttaataaaacactg
acaggtagtcaaataagatatttgctagttagtaaagaggaagagatttt
tttttgcagcattagtggtagagagagtggtagagagagagaattttaaa
gatgaatttgggttaccaaaatctgcagagtgcctgatatcttttaaatt
ggctgaacaagataatgagactagaattttgacttttcatgtctgctaag
gatgacagaggtgcatctagaaaatggtataaccagttccagtaagaaaa
gggttggggagttcagaaagaagactaagatacaacattcatacggttaa
atgcagaaggaccttaattccggacctatgtagctcttttctatggggct
tgtggctctttgaccaggtcacttaacccagtcctcgacaatgcctcacc
ttaa

gaattcttaacagaggaatcttgaatgggcaaaaaacactttcttactga
ctttgaagtttctgtttttattttcatatgcttgcttgcataacttatgt
atttgctcaaaggtgtgtgagcgcctgtgagtattgcttcagatttgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtaaaagccagagggtgt
tgtcagggaatcttccttgattactcttttacattattctttttgaatca
tggttttaatcaaatactgacctcacaatatggctagtgttttcagtcag
cttgatccatggatcttctgcatctgctcttctggctggaattacaggca
ggctgctatttttacctagcctgtacttaggttcttgggaacaaaattcc
tatcttcgtatgtgtgaggttaagtgctttcatcactgagacatctccct
aaacttgacttctataaccagatctggatattatcagttatataaaatgc
atatataaaaatgtttactgataataaatgttgaatatatttattttata
ctaattattatacacattattttactgtatattggattataagtcacttt
tctttttgatgtcgttgtatttatttattacaacttgaagattaactcct
gacaaacgatgaaatattataaggtacagatcatcttcactgatattcaa
tgttgatcaacatctactttttaagatgcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113773926_113775073
seq2: B6Ng01-212K23.b_47_1200

seq1  GAATTCCTCTGCATATCTATAAAGATATATAAAGACATAGCATTTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGCATATCTATAAAGATATATAAAGACATAGCATTTTGTGT  50

seq1  ATTTTTTTTAAAGTTTCTTGGGTGAAGTGAACGTAGAAGCTTTATACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAAAGTTTCTTGGGTGAAGTGAACGTAGAAGCTTTATACCAA  100

seq1  TCCTTAATAGTGTAACTGTTAAGACACTAACAGATAGACACTCAAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATAGTGTAACTGTTAAGACACTAACAGATAGACACTCAAAAGTT  150

seq1  TATATAATTGTTGTCCATGACAACCTAGAGTACATCTCTGCCAATCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTGTTGTCCATGACAACCTAGAGTACATCTCTGCCAATCCATC  200

seq1  CTGGGATATCCAGAATGACAATTTAGTGCTGCAGAGCCACTTGGTAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATATCCAGAATGACAATTTAGTGCTGCAGAGCCACTTGGTAACAT  250

seq1  TGGAAGCTGCCCATAATCTTCCTGTCTTCATGACCCACTTGGTAGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTGCCCATAATCTTCCTGTCTTCATGACCCACTTGGTAGCAAAG  300

seq1  CACTCTAATGGACTACCACAAATAATAACCTGAGATAACAAAGGAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAATGGACTACCACAAATAATAACCTGAGATAACAAAGGAGAGGC  350

seq1  TCATCATAGATTTTGGACATTTATTCAAAATGAATGAGTATAATTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATAGATTTTGGACATTTATTCAAAATGAATGAGTATAATTTTTAT  400

seq1  TCTTCACAGCATAAGGGGATTACCTGGCTTCAATACACATTTTCTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGCATAAGGGGATTACCTGGCTTCAATACACATTTTCTGGAAT  450

seq1  TACTGCATATTCATCCAATATTTGAAAGAACCTACTATCAAATTTTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATATTCATCCAATATTTGAAAGAACCTACTATCAAATTTTATAT  500

seq1  TTTCATTATATTTTATAGTTCTTGAGAGAGGGGTTGAAGAATAAAAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTATATTTTATAGTTCTTGAGAGAGGGGTTGAAGAATAAAAAGGT  550

seq1  ATAGCATCTCCATTACTGTTTCCTATTCAAAAATCCCATGGAAGTCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCTCCATTACTGTTTCCTATTCAAAAATCCCATGGAAGTCAAGC  600

seq1  ACACTGGAAGTGGGTAGGACACCAAAGATCACAAGTTGTCCTATGTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGAAGTGGGTAGGACACCAAAGATCACAAGTTGTCCTATGTATTA  650

seq1  ACTCATGCATCATCTTGGATATGCATGATTGTTTCCATCTTATATATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGCATCATCTTGGATATGCATGATTGTTTCCATCTTATATATAGG  700

seq1  TAAGTGGAAAGAAAGTGCTTGTCAGTTTGTTTAGAGTTAATAAAACACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGAAAGAAAGTGCTTGTCAGTTTGTTTAGAGTTAATAAAACACTG  750

seq1  ACAGGTAGTCAAATAAGATATTTGCTAGTTAGTAAAGAGGAAGAGATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGTCAAATAAGATATTTGCTAGTTAGTAAAGAGGAAGAGATTTT  800

seq1  TTTTTGCAGCATTAGTGGTAGAGAGAGTGGTAGAGAGAGAGAATTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAGCATTAGTGGTAGAGAGAGTGGTAGAGAGAGAGAATTTTAAA  850

seq1  GATGAATTTGGGTTACC-AAATCTGCAGAGTGCCTGATATCTTTTAAATT  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATGAATTTGGGTTACCAAAATCTGCAGAGTGCCTGATATCTTTTAAATT  900

seq1  GGCTGAACAAGATAATGAGACTAGAATTTTGACTTTTCATGTCTGCTAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAACAAGATAATGAGACTAGAATTTTGACTTTTCATGTCTGCTAAG  950

seq1  GATGACAGAGGTGCATCTAGAAAATGGTATAACAAGTTCCAGTAAGAAAA  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATGACAGAGGTGCATCTAGAAAATGGTATAACCAGTTCCAGTAAGAAAA  1000

seq1  GGGTT-GGGAGTCCAGAAAGAAGACTAAGATAC-ACAATCATA-AGTTAA  1046
      ||||| |||||| |||||||||||||||||||| ||| |||||  |||||
seq2  GGGTTGGGGAGTTCAGAAAGAAGACTAAGATACAACATTCATACGGTTAA  1050

seq1  ATGCAG-AGGACCT--AATCCAGACCTATGTAAGCTC-TTTCTATGGGGC  1092
      |||||| |||||||  | ||| ||||||||| ||||| ||||||||||||
seq2  ATGCAGAAGGACCTTAATTCCGGACCTATGT-AGCTCTTTTCTATGGGGC  1099

seq1  TTTGTGGCTC-TTGACACAGGTCAC-TAACCCAGTTCCTCGACAATGCCT  1140
       ||||||||| ||||| |||||||| |||||||| |||||||||||||||
seq2  -TTGTGGCTCTTTGAC-CAGGTCACTTAACCCAG-TCCTCGACAATGCCT  1146

seq1  CACTTTAA  1148
      ||| ||||
seq2  CACCTTAA  1154


seq1: chr1_113977316_113977874
seq2: B6Ng01-212K23.g_66_624 (reverse)

seq1  AATAATTAGTATAAAATAAATATATTCAACATTTATTATCAGTAAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAGTATAAAATAAATATATTCAACATTTATTATCAGTAAACATT  50

seq1  TTTATATATGCATTTTATATAACTGATAATATCCAGATCTCATTATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TTTATATATGCATTTTATATAACTGATAATATCCAGATCTGGTTATAGAA  100

seq1  GTCAAGTTTAGGGAGATGTCTCAGTGATGAAAGCACTTAACCTCACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTTTAGGGAGATGTCTCAGTGATGAAAGCACTTAACCTCACACAT  150

seq1  ACGAAGATAGGAATTTTGTTCCCAAGAACCTAAGTACAGGCTAGGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGATAGGAATTTTGTTCCCAAGAACCTAAGTACAGGCTAGGTAAAA  200

seq1  ATAGCAGCCTGCCTGTAATTCCAGCCAGAAGAGCAGATGCAGAAGATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGCCTGCCTGTAATTCCAGCCAGAAGAGCAGATGCAGAAGATCCA  250

seq1  TGGATCAAGCTGACTGAAAACACTAGCCATATTGTGAGGTCAGTATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAGCTGACTGAAAACACTAGCCATATTGTGAGGTCAGTATTTGA  300

seq1  TTAAAACCATGATTCAAAAAGAATAATGTAAAAGAGTAATCAAGGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCATGATTCAAAAAGAATAATGTAAAAGAGTAATCAAGGAAGAT  350

seq1  TCCCTGACAACACCCTCTGGCTTTTACATGCACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACAACACCCTCTGGCTTTTACATGCACACACACACACACACACA  400

seq1  CACACACACACACAAATCTGAAGCAATACTCACAGGCGCTCACACACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAAATCTGAAGCAATACTCACAGGCGCTCACACACCTT  450

seq1  TGAGCAAATACATAAGTTATGCAAGCAAGCATATGAAAATAAAAACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAATACATAAGTTATGCAAGCAAGCATATGAAAATAAAAACAGAA  500

seq1  ACTTCAAAGTCAGTAAGAAAGTGTTTTTTGCCCATTCAAGATTCCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAGTCAGTAAGAAAGTGTTTTTTGCCCATTCAAGATTCCTCTGT  550

seq1  TAAGAATTC  559
      |||||||||
seq2  TAAGAATTC  559


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