BAC Information

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BAC

Clone NameB6Ng01-212L06
Chromosome1 (Build37)
Map Location 66,749,275 - 66,873,477
singlet/doubletdoublet
Overlap geneRpe, 1110028C15Rik
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneAcadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212L06.bB6Ng01-212L06.g
ACCGA030434GA030435
length1,0001,126
definitionB6Ng01-212L06.b B6Ng01-212L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,872,871 - 66,873,477)(66,749,275 - 66,750,390)
sequence
gaattctttactgaacacctaggattacttttttttttagaattatatat
tttgtattattcacttagatcaatgttcatgataaggtttgaactgtacc
tttagaacacttcttttcagcctgtgtcttgagtgttccagtgttaactg
ttgaaagagcagcttttatcaggaactgcttttttgcgccttgattagaa
accaagagagaccatgtttatctgagtccgtttctaggctctgttctgtt
gcactgatctctgactgtaaagccttcgctgctatcctgagtttagtagt
ttttagaaagttttaaaactagatggtggaattttcctagctttgttctt
tttcaaaattgctctggctcctcttatgcttcgattattcctaacttttt
aaacttcatgttcattttttaaaatgaatttctctgtagctatgcacata
gtcctgtggcacttttgggtgggatgagttagatcttcacaccagggtga
agggaggtgtcatctgctgggatcttccaggacttgaatgagaggtgcgt
ttatttagatctttagtcagctgcttttagacttcatcactaaagtgtca
tgtacatgtttagttatgcttgcatgtgaactcatttttgaaacaactgc
aaattgcattgctgtttaactttgatttataactattaccaagataattg
cttatcttgtattctacagcttgttgaacttagttctaggagtttctttg
caatttctttgagtttcctatatgaacagtagtgttatcgaggaatcaga
agttacttttctttttataatttgtactcgttttcagctcttgatttctc
tatcaccatttttttttttcaaatgataagacttctccctacaacagtga
tcaggaacgaggtatgtaatctgtacaagttattctcatagttgacacag
gttggactggaaagtccaagattaggatatccatgtctggtctttgcttt


gaattccttagatatctggtcctttgtgtagggccagggctctgtgggct
gtccaggtactctttgaggttaatatgttatcgtgaagagtaaggtatat
tgctatgtctctctctcctggtgtactgtaaactttccaagagcaggatc
tgactttccttgataagagacattaaagcatgttatcattgcttagtaat
agtagaaagcatctctgagaatcaccgatgccccccccttcccccagctg
gcccccttccccatatcagacttaagttagtaaataaggcaaaaaaatta
ttttaaatcgttctacttttaacaatttttatgcctttaaatctatacct
accttttttctttcctttgaagtaaaagctatttccattcatcttttgca
aaagaggaaaccagtttggggaagtacagctcctttcccatcactctggc
agaatagacaaagcctgatgtctccagaagagagctgtgggatcccttta
caaaggtggccagcctcctctgcttactctccacccctccgttttcttct
ctgtttcaaactgatcttatctagaaagtcagaaactaggctaagaaaca
ctaggtggccagacacaagtatggttaaatatctgaagtaaagaacaggt
ttgtttttctggaaacacattttgagaaaagcacaaaacacaccatggca
gaatgctagctggaatgtgctgatcccaactatgggagcaacgcacacac
ggctacttctaaattagtcattggcatttcatttacgttggagagatttt
atataaatactgaatttctgacttttgctggagatatcaaagatttggaa
tttctcttctgtattctggtaaagccttgattgtgtggaattgagcaagg
caagcatcttgtaaccagtttctcattgtgtccttggccctaccttctct
agcctggctcacctgcctcagttttccttttgcacagccaaagacttcat
ccagttcctgatccccggggagattttctggttccctgatcttggtgccg
ttttgaccaaccgtaatccttctaccatttcgtttgtgtggtttgtcctg
ccgataagatcgccttccagttatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66872871_66873477
seq2: B6Ng01-212L06.b_46_652 (reverse)

seq1  ATGTACATGACACTTTAGTGATGAAGTCTAAAAGCAGCTGACTAAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATGACACTTTAGTGATGAAGTCTAAAAGCAGCTGACTAAAGATC  50

seq1  TAAATAAACGCACCTCTCATTCAAGTCCTGGAAGATCCCAGCAGATGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAACGCACCTCTCATTCAAGTCCTGGAAGATCCCAGCAGATGACA  100

seq1  CCTCCCTTCACCCTGGTGTGAAGATCTAACTCATCCCACCCAAAAGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCACCCTGGTGTGAAGATCTAACTCATCCCACCCAAAAGTGCC  150

seq1  ACAGGACTATGTGCATAGCTACAGAGAAATTCATTTTAAAAAATGAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTATGTGCATAGCTACAGAGAAATTCATTTTAAAAAATGAACAT  200

seq1  GAAGTTTAAAAAGTTAGGAATAATCGAAGCATAAGAGGAGCCAGAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTAAAAAGTTAGGAATAATCGAAGCATAAGAGGAGCCAGAGCAAT  250

seq1  TTTGAAAAAGAACAAAGCTAGGAAAATTCCACCATCTAGTTTTAAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAAGAACAAAGCTAGGAAAATTCCACCATCTAGTTTTAAAACTT  300

seq1  TCTAAAAACTACTAAACTCAGGATAGCAGCGAAGGCTTTACAGTCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAACTACTAAACTCAGGATAGCAGCGAAGGCTTTACAGTCAGAGA  350

seq1  TCAGTGCAACAGAACAGAGCCTAGAAACGGACTCAGATAAACATGGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCAACAGAACAGAGCCTAGAAACGGACTCAGATAAACATGGTCTC  400

seq1  TCTTGGTTTCTAATCAAGGCGCAAAAAAGCAGTTCCTGATAAAAGCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTCTAATCAAGGCGCAAAAAAGCAGTTCCTGATAAAAGCTGCT  450

seq1  CTTTCAACAGTTAACACTGGAACACTCAAGACACAGGCTGAAAAGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACAGTTAACACTGGAACACTCAAGACACAGGCTGAAAAGAAGTG  500

seq1  TTCTAAAGGTACAGTTCAAACCTTATCATGAACATTGATCTAAGTGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGGTACAGTTCAAACCTTATCATGAACATTGATCTAAGTGAATA  550

seq1  ATACAAAATATATAATTCTAAAAAAAAAAGTAATCCTAGGTGTTCAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATATATAATTCTAAAAAAAAAAGTAATCCTAGGTGTTCAGTAA  600

seq1  AGAATTC  607
      |||||||
seq2  AGAATTC  607


seq1: chr1_66749275_66750390
seq2: B6Ng01-212L06.g_66_1191

seq1  GAATTCCTTAGATATCTGGTCCTTTGTGTAGGGCCAGGGCTCTGTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGATATCTGGTCCTTTGTGTAGGGCCAGGGCTCTGTGGGCT  50

seq1  GTCCAGGTACTCTTTGAGGTTAATATGTTATCGTGAAGAGTAAGGTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGTACTCTTTGAGGTTAATATGTTATCGTGAAGAGTAAGGTATAT  100

seq1  TGCTATGTCTCTCTCTCCTGGTGTACTGTAAACTTTCCAAGAGCAGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTCTCTCTCTCCTGGTGTACTGTAAACTTTCCAAGAGCAGGATC  150

seq1  TGACTTTCCTTGATAAGAGACATTAAAGCATGTTATCATTGCTTAGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCCTTGATAAGAGACATTAAAGCATGTTATCATTGCTTAGTAAT  200

seq1  AGTAGAAAGCATCTCTGAGAATCACCGATGCCCCCCCCTTCCCCCAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGCATCTCTGAGAATCACCGATGCCCCCCCCTTCCCCCAGCTG  250

seq1  GCCCCCTTCCCCATATCAGACTTAAGTTAGTAAATAAGGCAAAAAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTTCCCCATATCAGACTTAAGTTAGTAAATAAGGCAAAAAAATTA  300

seq1  TTTTAAATCGTTCTACTTTTAACAATTTTTATGCCTTTAAATCTATACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCGTTCTACTTTTAACAATTTTTATGCCTTTAAATCTATACCT  350

seq1  ACCTTTTTTCTTTCCTTTGAAGTAAAAGCTATTTCCATTCATCTTTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTTCTTTCCTTTGAAGTAAAAGCTATTTCCATTCATCTTTTGCA  400

seq1  AAAGAGGAAACCAGTTTGGGGAAGTACAGCTCCTTTCCCATCACTCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAAACCAGTTTGGGGAAGTACAGCTCCTTTCCCATCACTCTGGC  450

seq1  AGAATAGACAAAGCCTGATGTCTCCAGAAGAGAGCTGTGGGATCCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGACAAAGCCTGATGTCTCCAGAAGAGAGCTGTGGGATCCCTTTA  500

seq1  CAAAGGTGGCCAGCCTCCTCTGCTTACTCTCCACCCCTCCGTTTTCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGGCCAGCCTCCTCTGCTTACTCTCCACCCCTCCGTTTTCTTCT  550

seq1  CTGTTTCAAACTGATCTTATCTAGAAAGTCAGAAACTAGGCTAAGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCAAACTGATCTTATCTAGAAAGTCAGAAACTAGGCTAAGAAACA  600

seq1  CTAGGTGGCCAGACACAAGTATGGTTAAATATCTGAAGTAAAGAACAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGGCCAGACACAAGTATGGTTAAATATCTGAAGTAAAGAACAGGT  650

seq1  TTGTTTTTCTGGAAACACATTTTGAGAAAAGCACAAAACACACCATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTGGAAACACATTTTGAGAAAAGCACAAAACACACCATGGCA  700

seq1  GAATGCTAGCTGGAATGTGCTGATCCCAACTATGGGAGCAACGCACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTAGCTGGAATGTGCTGATCCCAACTATGGGAGCAACGCACACAC  750

seq1  GGCTACTTCTAAATTAGTCATTGGCATTTCATTTACGTTGGAGAGATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTTCTAAATTAGTCATTGGCATTTCATTTACGTTGGAGAGATTTT  800

seq1  ATATAAATACTGAATTTCTGACTTTTGCTGGAGATATCAAAGATTTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATACTGAATTTCTGACTTTTGCTGGAGATATCAAAGATTTGGAA  850

seq1  -TTCTCTTCTGTATTCTGGTAAGGCCTTGATTGTGTGGAATTGAGCAAGG  899
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTCTCTTCTGTATTCTGGTAAAGCCTTGATTGTGTGGAATTGAGCAAGG  900

seq1  CAAGCATC-TGTAACCAGTTTCTCATTGTGTCCTGGGCCCTACCTTCTCT  948
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  CAAGCATCTTGTAACCAGTTTCTCATTGTGTCCTTGGCCCTACCTTCTCT  950

seq1  AGCCTGGCTCACCTG-CTCAGTTTTCCTTTTGCCACCAGCCAAAGACT--  995
      ||||||||||||||| |||||||||||||||||   ||||||||||||  
seq2  AGCCTGGCTCACCTGCCTCAGTTTTCCTTTTGC--ACAGCCAAAGACTTC  998

seq1  CTCCAGTTCCTGATCCCCGGGAAGATTTTCTGGTT-CCTG-TCTTGGTG-  1042
       |||||||||||||||||||| ||||||||||||| |||| |||||||| 
seq2  ATCCAGTTCCTGATCCCCGGGGAGATTTTCTGGTTCCCTGATCTTGGTGC  1048

seq1  CGTTTTGTACCAACCGTAATCC-TCTTACATTTTGTTTGT-TGGTTTGT-  1089
      ||||||| |||||||||||||| |||  ||||| |||||| |||||||| 
seq2  CGTTTTG-ACCAACCGTAATCCTTCTACCATTTCGTTTGTGTGGTTTGTC  1097

seq1  CTGC--AGTAGACTGCCTTCCAGTTATTA  1116
      ||||  |  |||  |||||||||||||||
seq2  CTGCCGATAAGATCGCCTTCCAGTTATTA  1126


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