BAC Information

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BAC

Clone NameB6Ng01-212N02
Chromosome1 (Build37)
Map Location 123,228,652 - 123,392,745
singlet/doubletdoublet
Overlap geneInsig2, Ccdc93
Upstream geneC1ql2, Marco, En1, AI848258
Downstream geneLOC100041926, Htr5b, LOC666656, Ddx18, LOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212N02.bB6Ng01-212N02.g
ACCGA030517GA030518
length980105
definitionB6Ng01-212N02.b B6Ng01-212N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,228,652 - 123,229,622)(123,392,641 - 123,392,745)
sequence
gaattcactcttacatcatgcatcctaacccctctgaattcgacacctga
gtagttctcagcgtgactgtagattaggaccacctgtgaaattacattaa
ttcatgtcctatatttggtacctttctaggacctaagctatactgtacat
attctagtttaattgcactgaaggacagacctgggcccattcaataaagt
tcttgtataatcctaatacactcttaaagaaaccctaatacagacagtct
agcatcatttggcaataaaatagaaaacgaggcagaagctcaacacacat
ctgttcaattccaatgcctatgttcttagccactctctacagccttgtca
acaattgcatacagtaagcagttagaaactcactgagacacagaaataaa
tgagacagagcacttaccttcagtacattcattgagggaagcagagatgt
caggaaagcaagctagtccagctcacataaacagacataagcaaatagag
aactcccattgagataagacctgccccattttaatatagattggtgtgga
aggtgaccaatggcaggggatgtaggacagcaggattgcaagtgtcagct
gggacatggtgcaagcatttattgaggcaatggcaggggtcagagaattg
gcagagctaactgtcccctgatgtgaaagtgatgaaaagttctgagtgga
agtggcttccaagttctgagccagagaagtgcagtggaagaacactgttg
atttagctaaagagttgagagttgagttggggtcgaataacttcaaagga
cttagaatgttcagatagagaaatcctatcagagcagtgggagatgcgaa
tctataactcaggtgagcaaatacattcataaaaataggacctaaggatg
gctccattgggttcggcatttgactttacagggcatgaaggacccaaggt
tctggtcctcagaagccatggtaaaaagct
agccctccagtctgacaggggcaacaggacacaaaggcaggtgccacccc
cgaacctcccagtgagtgtgtgtgtgagagagagtgtgtgtgagtgtgtg
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_123228652_123229622
seq2: B6Ng01-212N02.b_45_1024

seq1  GAATTCACTCTTACATCATGCATCCTAACCCCTCTGAATTCGACACCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTACATCATGCATCCTAACCCCTCTGAATTCGACACCTGA  50

seq1  GTAGTTCTCAGCGTGACTGTAGATTAGGACCACCTGTGAAATTACATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTCAGCGTGACTGTAGATTAGGACCACCTGTGAAATTACATTAA  100

seq1  TTCATGTCCTATATTTGGTACCTTTCTAGGACCTAAGCTATACTGTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCCTATATTTGGTACCTTTCTAGGACCTAAGCTATACTGTACAT  150

seq1  ATTCTAGTTTAATTGCACTGAAGGACAGACCTGGGCCCATTCAATAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTTTAATTGCACTGAAGGACAGACCTGGGCCCATTCAATAAAGT  200

seq1  TCTTGTATAATCCTAATACACTCTTAAAGAAACCCTAATACAGACAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATAATCCTAATACACTCTTAAAGAAACCCTAATACAGACAGTCT  250

seq1  AGCATCATTTGGCAATAAAATAGAAAACGAGGCAGAAGCTCAACACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATTTGGCAATAAAATAGAAAACGAGGCAGAAGCTCAACACACAT  300

seq1  CTGTTCAATTCCAATGCCTATGTTCTTAGCCACTCTCTACAGCCTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAATTCCAATGCCTATGTTCTTAGCCACTCTCTACAGCCTTGTCA  350

seq1  ACAATTGCATACAGTAAGCAGTTAGAAACTCACTGAGACACAGAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGCATACAGTAAGCAGTTAGAAACTCACTGAGACACAGAAATAAA  400

seq1  TGAGACAGAGCACTTACCTTCAGTACATTCATTGAGGGAAGCAGAGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGAGCACTTACCTTCAGTACATTCATTGAGGGAAGCAGAGATGT  450

seq1  CAGGAAAGCAAGCTAGTCCAGCTCACATAAACAGACATAAGCAAATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGCAAGCTAGTCCAGCTCACATAAACAGACATAAGCAAATAGAG  500

seq1  AACTCCCATTGAGATAAGACCTGCCCCATTTTAATATAGATTGGTGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCATTGAGATAAGACCTGCCCCATTTTAATATAGATTGGTGTGGA  550

seq1  AGGTGACCAATGGCAGGGGATGTAGGACAGCAGGATTGCAAGTGTCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACCAATGGCAGGGGATGTAGGACAGCAGGATTGCAAGTGTCAGCT  600

seq1  GGGACATGGTGCAAGCATTTATTGAGGCAATGGCAGGGGTCAGAGAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGGTGCAAGCATTTATTGAGGCAATGGCAGGGGTCAGAGAATTG  650

seq1  GCAGAGCTAACTGTCCCCTGATGTGAAAGTGATGAAAAGTTCTGAGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTAACTGTCCCCTGATGTGAAAGTGATGAAAAGTTCTGAGTGGA  700

seq1  AGTGGCTTCCAAGTTCTGAGCCAGAGAAGTGCAGTGGAAGAACACTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTCCAAGTTCTGAGCCAGAGAAGTGCAGTGGAAGAACACTGTTG  750

seq1  ATTTAGCTAAAGAGTTGAGAGTTGAGTTGGGGTCGAATAACTTCAAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTAAAGAGTTGAGAGTTGAGTTGGGGTCGAATAACTTCAAAGGA  800

seq1  CTTAGAATGTTCAGATAGAGAAATCCTATCAGAGCAGT-GGAGATGCGAA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTAGAATGTTCAGATAGAGAAATCCTATCAGAGCAGTGGGAGATGCGAA  850

seq1  TCTATAACTCAGGTGAGCAAATACATTCAT-AAAATAGGAGCCTAA-GAT  897
      |||||||||||||||||||||||||||||| ||||||||| ||||| |||
seq2  TCTATAACTCAGGTGAGCAAATACATTCATAAAAATAGGA-CCTAAGGAT  899

seq1  GGTTCCATT-GGTTCAGCATTTGAC-TTACA-GGCATG-AGGACCCAA-G  942
      || |||||| ||||| ||||||||| ||||| |||||| ||||||||| |
seq2  GGCTCCATTGGGTTCGGCATTTGACTTTACAGGGCATGAAGGACCCAAGG  949

seq1  TTCT-GTCCTCAGAAGCCAT-GTAAAAAGCT  971
      |||| ||||||||||||||| ||||||||||
seq2  TTCTGGTCCTCAGAAGCCATGGTAAAAAGCT  980

seq1: chr1_123392641_123392745
seq2: B6Ng01-212N02.g_73_177 (reverse)

seq1  ACACACACACACTCACACACACTCTCTCTCACACACACACTCACTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTCACACACACTCTCTCTCACACACACACTCACTGGGAG  50

seq1  GTTCGGGGGTGGCACCTGCCTTTGTGTCCTGTTGCCCCTGTCAGACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGGGGTGGCACCTGCCTTTGTGTCCTGTTGCCCCTGTCAGACTGGA  100

seq1  GGGCT  105
      |||||
seq2  GGGCT  105