BAC Information

Click to search

BAC

Clone NameB6Ng01-213I06
Chromosome1 (Build37)2 (Build37)
Map Location 124,759,304 - 124,759,54090,992,057 - 90,993,151
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213I06.bB6Ng01-213I06.g
ACCGA031019GA031020
length2681,101
definitionB6Ng01-213I06.b B6Ng01-213I06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,759,304 - 124,759,540)(90,992,057 - 90,993,151)
sequence
cagttctctcttgtgcacacagtctgaatttgtctgtctgcgaaatgggg
ataaaaatagtgacaattaagcccgcaagatgactcagtgggaagctctg
aaaacccggcagcccaggttcaatcccagaaggtggaaggaaagaggtga
cgccacaaaattgtcctggaaccttcaaataagttctatggtgaacatgc
acacacgcacagagagagagagagagagagagagagagagagagagagag
agagagagagagagagga

gaattccaagacagctagggctacacagagaaaccctgtttcaaaagaaa
aaaagaaaaaggaaaaggaaaaagaaaaagaaaaaggaggcatttaagtg
ttgtgatgagaacagatttcatctcagatccgcagaggtgtgcagacctc
acatggaaactgctgtactctaacagctggaggactgagagtccccacac
tgaacagaaggaccaacacctcacctggactactgccccattctctaagc
tactaactataactacccacctctaaactactaactctaactacccattc
tctaaactactaactctaactgcccattctctaaactactaactacccat
tctctaaactactaactctaactacccattctccaaactactaactatag
ctacccatctctaaactactaactgtaactaccgattctcctctaaacta
ggcattaactgggctgcatagcagcatggcagacgtgtttagtgtgaaag
cgctgtataggcagggggacacgcaggataaaagggacggtccgatgtgc
tcaccaggctgttcagctgatcgagcacctcattgacttgctggctgtac
accagcccaatgtgggactttcccattaggcgccgtactttcttcctgat
gtcattcttgttcacctgtaaagccaagacaggagtcttaataaaggctc
tgctcccttcccaagtgaggcagagacaagaaaataatcagtttccactt
acctgagagaaatggaattctgaaagactatgttactgactatggcagaa
cacttttcaactgtgtgttctgtccatatgctggggattgcctctgcctc
tagctagcttctacaggaaagtggctcttagagagttggacatcaaggag
acacctcctcccatcctttaccaacaccaccataacatcctccccaaaag
gacttcttagagtatgatttagaaacagtaacacagggtacagtaaagtg
gggaccgctagtacctggagacaccttgcaggtaagcaccaccaatccac
cccttgacacagggaaatgaattcaagcataaaagaaaagcttacaatat
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_124759304_124759540
seq2: B6Ng01-213I06.b_247_315 (reverse)

seq1  TCCTCTCTCTCTCTTAATTATCTTTAACCATTTTTATAGTCCAGTCCTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCCCTCGTGGTCTGCCCTCAATCACTTTCTCATCACATTCTTCTCCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATCTCCAAGAGGATGACTCCACACCCCCACAACCTACCCCACCCTGCTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGTATTCCCACTTCCTGAGGCCTAAACTCTCTCTCTCTCTCTCTCTCTCT  200
                  ||||     ||   ||||||||||||||||||||||||
seq2  ------------TCCT-----CT-CTCTCTCTCTCTCTCTCTCTCTCTCT  32

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTG  237
      ||||||||||||||||||||||||||||| |||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTGTGCGTGTGTG  69


seq1: chr2_90992057_90993151
seq2: B6Ng01-213I06.g_63_1163

seq1  GAATTCCAAGACAGCTAGGGCTACACAGAGAAACCCTGTTTCAAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAGCTAGGGCTACACAGAGAAACCCTGTTTCAAAAGAAA  50

seq1  AAAAGAAAAAGGAAAAGGAAAAAGAAAAAGAAAAAGGAGGCATTTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGGAAAAGGAAAAAGAAAAAGAAAAAGGAGGCATTTAAGTG  100

seq1  TTGTGATGAGAACAGATTTCATCTCAGATCCGCAGAGGTGTGCAGACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGAGAACAGATTTCATCTCAGATCCGCAGAGGTGTGCAGACCTC  150

seq1  ACATGGAAACTGCTGTACTCTAACAGCTGGAGGACTGAGAGTCCCCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAACTGCTGTACTCTAACAGCTGGAGGACTGAGAGTCCCCACAC  200

seq1  TGAACAGAAGGACCAACACCTCACCTGGACTACTGCCCCATTCTCTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAAGGACCAACACCTCACCTGGACTACTGCCCCATTCTCTAAGC  250

seq1  TACTAACTATAACTACCCACCTCTAAACTACTAACTCTAACTACCCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTATAACTACCCACCTCTAAACTACTAACTCTAACTACCCATTC  300

seq1  TCTAAACTACTAACTCTAACTGCCCATTCTCTAAACTACTAACTACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTACTAACTCTAACTGCCCATTCTCTAAACTACTAACTACCCAT  350

seq1  TCTCTAAACTACTAACTCTAACTACCCATTCTCCAAACTACTAACTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAACTACTAACTCTAACTACCCATTCTCCAAACTACTAACTATAG  400

seq1  CTACCCATCTCTAAACTACTAACTGTAACTACCGATTCTCCTCTAAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATCTCTAAACTACTAACTGTAACTACCGATTCTCCTCTAAACTA  450

seq1  GGCATTAACTGGGCTGCATAGCAGCATGGCAGACGTGTTTAGTGTGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAACTGGGCTGCATAGCAGCATGGCAGACGTGTTTAGTGTGAAAG  500

seq1  CGCTGTATAGGCAGGGGGACACGCAGGATAAAAGGGACGGTCCGATGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTATAGGCAGGGGGACACGCAGGATAAAAGGGACGGTCCGATGTGC  550

seq1  TCACCAGGCTGTTCAGCTGATCGAGCACCTCATTGACTTGCTGGCTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGCTGTTCAGCTGATCGAGCACCTCATTGACTTGCTGGCTGTAC  600

seq1  ACCAGCCCAATGTGGGACTTTCCCATTAGGCGCCGTACTTTCTTCCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCAATGTGGGACTTTCCCATTAGGCGCCGTACTTTCTTCCTGAT  650

seq1  GTCATTCTTGTTCACCTGTAAAGCCAAGACAGGAGTCTTAATAAAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTTGTTCACCTGTAAAGCCAAGACAGGAGTCTTAATAAAGGCTC  700

seq1  TGCTCCCTTCCCAAGTGAGGCAGAGACAAGAAAATAATCAGTTTCCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTTCCCAAGTGAGGCAGAGACAAGAAAATAATCAGTTTCCACTT  750

seq1  ACCTGAGAGAAATGGAATTCTGAAAGACTATGTTACTGACTATGGCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGAGAAATGGAATTCTGAAAGACTATGTTACTGACTATGGCAGAA  800

seq1  CAC-TTTCAACTGTGTGTTCTGTCCATATGCTGGGGATTGCCTCTGCCTC  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCAACTGTGTGTTCTGTCCATATGCTGGGGATTGCCTCTGCCTC  850

seq1  TAGCTAGCTTCTACAGGAAAGTGGCTCTTAGAGAGTTGGACATCAAGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGCTTCTACAGGAAAGTGGCTCTTAGAGAGTTGGACATCAAGGAG  900

seq1  ACACCTCCTCCCATCCTTTACCAACACCACCATAACATCCTCCCCAAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCTCCCATCCTTTACCAACACCACCATAACATCCTCCCCAAAAG  950

seq1  GACTTCTTAGAGTATGATTTAGAAACAGTAACACA-GGTACAGTAAAGTG  998
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACTTCTTAGAGTATGATTTAGAAACAGTAACACAGGGTACAGTAAAGTG  1000

seq1  GG--ACGCTAGTACCT-GAGACACCTTGCAGGTAAGCACCACC-ATCCAC  1044
      ||   ||||||||||| |||||||||||||||||||||||||| ||||||
seq2  GGGACCGCTAGTACCTGGAGACACCTTGCAGGTAAGCACCACCAATCCAC  1050

seq1  CCCTGACCACAGGGAAATGGAATTCAAGCAT-AAAGAAAAGCTTACAATA  1093
      ||||   ||||||||||| |||||||||||| ||||||||||||||||||
seq2  CCCTTGACACAGGGAAAT-GAATTCAAGCATAAAAGAAAAGCTTACAATA  1099

seq1  TA  1095
      ||
seq2  TA  1101


| Home | SequenceCutter | Blast | Download |