BAC Information

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BAC

Clone NameB6Ng01-213L07
Chromosome1 (Build37)
Map Location 3,404,485 - 3,405,574
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213L07.bB6Ng01-213L07.g
ACCGA031154GA031155
length1,0811,064
definitionB6Ng01-213L07.b B6Ng01-213L07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaaagacctaagggagtttagaacttgggacatgtgaccaaga
actcagaaatttttgtttcatcttaatagtgaaagcgaatgtcaaaggtt
agtggtcaagcatgtgcccacatggtctatccaggagtcattaaaaggcc
aggctgagtagatgatctctgatgttgtcacttttagttttgtggtggta
acttagtaactgtagggagccctcattcacatagccctcaatcacatctg
ttgattcagttaacaaaataatgcaagaaaaaggtcttgggccttaagtg
tattaggtaagggattgtctactttttttttcttgtcattatgttccaag
tataataatttgcagagcatctacattgtatgaggtatcataagcaatac
acagatgatttgacatacaaaaaaggcatatattccattttactttagat
gtaaaactacaatttgacttatgtagcaagtcccagatccaatctgttaa
gtacacaaagggaccatgaactcaatttagtttgtttagaactagactgg
cagaatggcagagaagacattgactcataacagactgttgtctacagatc
ttcctcagcagaagagcattgctcagtgtcaggatccctgtttccaaaga
tgggctccataaagcagctctaggactgctgtgtgggatcacagtgtact
atgtaatgttcactataacaattcctatgacacaatcatgaattcagtgc
agtacttggttttgatagccatgtacacttggttgcatactgaagcctta
ttcaaaagccatgttcctcttaggaactgtaaaggttaagaaaacaaaac
taggatttactaggttgggccagtgccagtctaccaacccagatatccca
atgctttccagatggtttaatttgttcatttttcattcccactttgcttg
ccatggtcagaaagacatattttatcttttaagtagaatttagttgtatg
tgccaaatgagtactgacttctgtgttaggatataagtttttctaaggcc
catgatgctgttgaagtacgcagatctttga
gaattcaaggaccatacctaaatgtagtatcccctcccccagcctgaaac
ctgcttgctcaggggtggagcttcctgctcattcgttctgccacgcccac
tgctagaacctgcggagccacacacgtgcacctttctactggaccagaga
ttattcagcgggagtcgggtcccctcccccttcctttataactagtgtcg
caacaataaaatttgagctttgatcagaatgaatttgtcttagctccgtt
tcttctttcgccccatctagattcctctcttacagctcgagtggccttct
cagtcgaaccgttcatgttgcgagctgctggcggccgcaacattttggcg
ccagaactgggacctaaagaatggcagagagatgctaagagaaacgctgc
tgctgtggagctccacaggaaaggatcttcgtatcagacatcggagcaat
ggacaggtacacatgctagcgctagcttaaaatttcagttttgtaaagtg
ttgctgaggatgcggtaggatacgaattaagcttgaatcagtgctaaccc
aacgctggttctgcttgggtcagcagcatgttaatcggaactagaaacgg
aagcaggcaggttggccgcagctttttagaaagctgcttaggtggaagaa
gaaagggtttaaagtcatggatcaggcggttgcccatagttttcaggagt
tgtttcaggccagaggagtaaggcttgaagtacaattagtaaaaaatttt
tttaggtaagatagataggtgttgcccatggttcaaggaagaagaaacag
tagattgtggaacctggggagaaagtttggtgaggccttaaaaatcactc
aggcagataatttttacccctagcctctgggcgcttgtaaatgatgcaat
aaagatgccgctttccccaggcttaagttgcccccaggcgggagctttcg
gtatcttcaggaggagttgcctgttcaaagaagtgcctcctcagaaaatg
attcttcttaactcaaaatttggattaatgtgtggaaactcgaatggaga
aaatctgattttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3404485_3405574
seq2: B6Ng01-213L07.b_43_1123 (reverse)

seq1  TCAAAGATTCTGCCGTCTTTCAACAGCATCATGGGCCCTTAGAAAAAACT  50
      ||||||| |||| |||  ||||||||||||||||| |||||||||||   
seq2  TCAAAGA-TCTG-CGTACTTCAACAGCATCATGGG-CCTTAGAAAAA--C  45

seq1  TTATATCCAAAACACAGAAGTCAGTAACTCATTTGGCACATAACAACTAA  100
      ||||||||  ||||||||||||||| ||||||||||||||| ||||||||
seq2  TTATATCC-TAACACAGAAGTCAGT-ACTCATTTGGCACAT-ACAACTAA  92

seq1  A-TCTACTTAAAAGATAAAATATGCTCTTTCTGACCATGGCAAGCAAAGT  149
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTCTACTTAAAAGATAAAATATG-TCTTTCTGACCATGGCAAGCAAAGT  141

seq1  GGGAAATTAAAAATGAACAATTAAAACCATCTGGAAAGCATTGGGATATC  199
      ||| ||| |||||||||||| | |||||||||||||||||||||||||||
seq2  GGG-AATGAAAAATGAACAAATTAAACCATCTGGAAAGCATTGGGATATC  190

seq1  TGGGTTGGTAGACTGGCACTGGCCCAACCTAGTAAATCCTAGTTTTGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGTAGACTGGCACTGGCCCAACCTAGTAAATCCTAGTTTTGTTT  240

seq1  TCTTAACCTTTACAGTTCCTAAGAGGAACATGGCTTTTGAATAAGGCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCTTTACAGTTCCTAAGAGGAACATGGCTTTTGAATAAGGCTTC  290

seq1  AGTATGCAACCAAGTGTACATGGCTATCAAAACCAAGTACTGCACTGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCAACCAAGTGTACATGGCTATCAAAACCAAGTACTGCACTGAAT  340

seq1  TCATGATTGTGTCATAGGAATTGTTATAGTGAACATTACATAGTACACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTGTGTCATAGGAATTGTTATAGTGAACATTACATAGTACACTG  390

seq1  TGATCCCACACAGCAGTCCTAGAGCTGCTTTATGGAGCCCATCTTTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCACACAGCAGTCCTAGAGCTGCTTTATGGAGCCCATCTTTGGAA  440

seq1  ACAGGGATCCTGACACTGAGCAATGCTCTTCTGCTGAGGAAGATCTGTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATCCTGACACTGAGCAATGCTCTTCTGCTGAGGAAGATCTGTAG  490

seq1  ACAACAGTCTGTTATGAGTCAATGTCTTCTCTGCCATTCTGCCAGTCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTCTGTTATGAGTCAATGTCTTCTCTGCCATTCTGCCAGTCTAG  540

seq1  TTCTAAACAAACTAAATTGAGTTCATGGTCCCTTTGTGTACTTAACAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACAAACTAAATTGAGTTCATGGTCCCTTTGTGTACTTAACAGAT  590

seq1  TGGATCTGGGACTTGCTACATAAGTCAAATTGTAGTTTTACATCTAAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGGGACTTGCTACATAAGTCAAATTGTAGTTTTACATCTAAAGT  640

seq1  AAAATGGAATATATGCCTTTTTTGTATGTCAAATCATCTGTGTATTGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAATATATGCCTTTTTTGTATGTCAAATCATCTGTGTATTGCTT  690

seq1  ATGATACCTCATACAATGTAGATGCTCTGCAAATTATTATACTTGGAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCTCATACAATGTAGATGCTCTGCAAATTATTATACTTGGAACA  740

seq1  TAATGACAAGAAAAAAAAAGTAGACAATCCCTTACCTAATACACTTAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAAGAAAAAAAAAGTAGACAATCCCTTACCTAATACACTTAAGG  790

seq1  CCCAAGACCTTTTTCTTGCATTATTTTGTTAACTGAATCAACAGATGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACCTTTTTCTTGCATTATTTTGTTAACTGAATCAACAGATGTGA  840

seq1  TTGAGGGCTATGTGAATGAGGGCTCCCTACAGTTACTAAGTTACCACCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCTATGTGAATGAGGGCTCCCTACAGTTACTAAGTTACCACCAC  890

seq1  AAAACTAAAAGTGACAACATCAGAGATCATCTACTCAGCCTGGCCTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAAGTGACAACATCAGAGATCATCTACTCAGCCTGGCCTTTTA  940

seq1  ATGACTCCTGGATAGACCATGTGGGCACATGCTTGACCACTAACCTTTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCCTGGATAGACCATGTGGGCACATGCTTGACCACTAACCTTTGA  990

seq1  CATTCGCTTTCACTATTAAGATGAAACAAAAATTTCTGAGTTCTTGGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGCTTTCACTATTAAGATGAAACAAAAATTTCTGAGTTCTTGGTCA  1040

seq1  CATGTCCCAAGTTCTAAACTCCCTTAGGTCTTTAGGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCAAGTTCTAAACTCCCTTAGGTCTTTAGGAATTC  1081