BAC Information

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BAC

Clone NameB6Ng01-213O07
Chromosome1 (Build37)
Map Location 35,587,523 - 35,730,811
singlet/doubletdoublet
Overlap genenone
Upstream geneCfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213O07.bB6Ng01-213O07.g
ACCGA031288GA031289
length1,0701,003
definitionB6Ng01-213O07.b B6Ng01-213O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,729,743 - 35,730,811)(35,587,523 - 35,588,516)
sequence
gaattcattagatacagttgaacaaggagatgttttagctcaccttgggg
tgggcgtctttgtagaggatcagtctcaggctgcagtcatccaggaagag
aaagctgtggttgatattctatatacactatcatcatctattcccagacc
aggccttgctcgcttcaaaacctgaccagaggagggccatatggttcagt
gggtctgaggcactgggatctctaatgtgggcatgctctagtcaacagca
cacatccactcagggctccatctgctcctcacagcaggtacagtcctctg
cgggcttgacatactcgtctttccctgtagtgaactcctgcttttactga
tgtctggatgctagccctatttacctatgagagatggaggtacatgttca
gaatacagcacaggtaggcaagccccatctgtggaaataaatggcctggt
cagcagatacccagagagaagaacagcagatcatagtggggttggggctg
aggctggtgctcactgtaagagagcattgatgatggtggggagcctggtg
taaaacaggcaagcagggtctggatataaggctggcagacctgattctag
tacttcacggcttctcagcccaggactgtcctgcagtgtgactggggacc
ctaaaactgtcatgggaggccctggaagaacactaagatgagaggtttat
tctggctcccagttccttaagtatttctggtctattattggactgctgta
gacagtagtggatctggccctttaagatcctttgtaagcaaaccagagca
cccatgtagacaggtaaacaaaactagaaactgcacttaccagatactgc
caaccaaatagccttacatggcaaggctaaccaaccagatatatcttctt
tgctttcccgctactttttctattattattattattatttattatatttg
ttatttgatgttcaaaatggagaattctcttttacctgtttatattgtat
gatgtgtgtgagaaggcttgtggtggtgcagtattaggtacacaagtgtg
tgcatgtggtgtggaagatc
gaattctctggctacacacactagccaaatgggcaatctccaggctaata
agagaaacaagaaggaccatgtctgagaaaggccatctaacccaaggtta
tcccttggcttccactccttgtacatctctcgccctaacactttgttaag
aagtggtaaagcaagggatggcaagcaggggtagggaagaggcacctgtg
agagcaggtttaactgaagtcggaaggagaattcaagcagtggttttgtt
ataacaatgtgtctgtgacttggggatgagagctgcagagacatagtaag
ctgtgtgctggaggggcctttgatgagggggaggggagagagcaaaaggc
tgacaactagtaagcctctgatagttctacagccatgtaaccttcttcct
gcatcatggtcctcctaaggtacctttctcttctccataagttatgaact
gtgtgaccctatgtctaggttatctgggaatagcatctatgctctttgtg
tcatattaataacacttctctcctcttttgggttgcaggtgttctggatt
ggatgaacattttatattcactggataagtaaacaggcctgccttgtaat
taactcacctggttaattatccctctcccccaggtataaatgcaaaactt
gaaaacccaaacactgcacccatactttacatcagaaatcctaaccagaa
tcgtttttttttttttttgactgatattgtaactcaccatagctcgggag
gtgacacttccccaggtttagagaccacatacctgacatcatcttctgag
ttccacctcctttcaaggagcatctctaacttttttgggactattgtgac
agtttgtctttattggcagcttatggaatttacatctccatgggaaacac
ctcctgtagctctagaagggtaatccaagacaggtgctagtgagaacggg
ggcatcggctttccattaggctggagtcctggacctgatataatgaagaa
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_35729743_35730811
seq2: B6Ng01-213O07.b_47_1116 (reverse)

seq1  GATC-TCCACACAACATGCACACACTTGTGTACCT-ATACTTGCAC--AC  46
      |||| ||||||| |||||||||||||||||||||| |||| |||||   |
seq2  GATCTTCCACACCACATGCACACACTTGTGTACCTAATAC-TGCACCACC  49

seq1  ACAAGCCCTCTCACACACATCATACAATATAAACAGGTAAAAGAGAATTC  96
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTTCTCACACACATCATACAATATAAACAGGTAAAAGAGAATTC  99

seq1  TCCATTTTGAACATCAAAATAACAAATAATAATAAATAATAATAATAATA  146
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TCCATTTTGAACATC-AAATAACAAAT-ATAATAAATAATAATAATAATA  147

seq1  ATAGAAAAAGTAGCGGGAAAGCAAAGAAGATATATCTGGTTGGTTAGCCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAGTAGCGGGAAAGCAAAGAAGATATATCTGGTTGGTTAGCCT  197

seq1  TGCCATGTAAGGCTATTTGGTTGGCAGTATCTGGTAAGTGCAGTTTCTAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTAAGGCTATTTGGTTGGCAGTATCTGGTAAGTGCAGTTTCTAG  247

seq1  TTTTGTTTACCTGTCTACATGGGTGCTCTGGTTTGCTTACAAAGGATCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTACCTGTCTACATGGGTGCTCTGGTTTGCTTACAAAGGATCTT  297

seq1  AAAGGGCCAGATCCACTACTGTCTACAGCAGTCCAATAATAGACCAGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCAGATCCACTACTGTCTACAGCAGTCCAATAATAGACCAGAAA  347

seq1  TACTTAAGGAACTGGGAGCCAGAATAAACCTCTCATCTTAGTGTTCTTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGGAACTGGGAGCCAGAATAAACCTCTCATCTTAGTGTTCTTCC  397

seq1  AGGGCCTCCCATGACAGTTTTAGGGTCCCCAGTCACACTGCAGGACAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTCCCATGACAGTTTTAGGGTCCCCAGTCACACTGCAGGACAGTC  447

seq1  CTGGGCTGAGAAGCCGTGAAGTACTAGAATCAGGTCTGCCAGCCTTATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGAGAAGCCGTGAAGTACTAGAATCAGGTCTGCCAGCCTTATAT  497

seq1  CCAGACCCTGCTTGCCTGTTTTACACCAGGCTCCCCACCATCATCAATGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCTGCTTGCCTGTTTTACACCAGGCTCCCCACCATCATCAATGC  547

seq1  TCTCTTACAGTGAGCACCAGCCTCAGCCCCAACCCCACTATGATCTGCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACAGTGAGCACCAGCCTCAGCCCCAACCCCACTATGATCTGCTG  597

seq1  TTCTTCTCTCTGGGTATCTGCTGACCAGGCCATTTATTTCCACAGATGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTCTGGGTATCTGCTGACCAGGCCATTTATTTCCACAGATGGG  647

seq1  GCTTGCCTACCTGTGCTGTATTCTGAACATGTACCTCCATCTCTCATAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTACCTGTGCTGTATTCTGAACATGTACCTCCATCTCTCATAGG  697

seq1  TAAATAGGGCTAGCATCCAGACATCAGTAAAAGCAGGAGTTCACTACAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGGCTAGCATCCAGACATCAGTAAAAGCAGGAGTTCACTACAGG  747

seq1  GAAAGACGAGTATGTCAAGCCCGCAGAGGACTGTACCTGCTGTGAGGAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACGAGTATGTCAAGCCCGCAGAGGACTGTACCTGCTGTGAGGAGC  797

seq1  AGATGGAGCCCTGAGTGGATGTGTGCTGTTGACTAGAGCATGCCCACATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGCCCTGAGTGGATGTGTGCTGTTGACTAGAGCATGCCCACATT  847

seq1  AGAGATCCCAGTGCCTCAGACCCACTGAACCATATGGCCCTCCTCTGGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCCAGTGCCTCAGACCCACTGAACCATATGGCCCTCCTCTGGTC  897

seq1  AGGTTTTGAAGCGAGCAAGGCCTGGTCTGGGAATAGATGATGATAGTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGAAGCGAGCAAGGCCTGGTCTGGGAATAGATGATGATAGTGTA  947

seq1  TATAGAATATCAACCACAGCTTTCTCTTCCTGGATGACTGCAGCCTGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATATCAACCACAGCTTTCTCTTCCTGGATGACTGCAGCCTGAGA  997

seq1  CTGATCCTCTACAAAGACGCCCACCCCAAGGTGAGCTAAAACATCTCCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTCTACAAAGACGCCCACCCCAAGGTGAGCTAAAACATCTCCTT  1047

seq1  GTTCAACTGTATCTAATGAATTC  1069
      |||||||||||||||||||||||
seq2  GTTCAACTGTATCTAATGAATTC  1070

seq1: chr1_35587523_35588516
seq2: B6Ng01-213O07.g_68_1070

seq1  GAATTCTCTGGCTACACACACTAGCCAAATGGGCAATCTCCAGGCTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCTACACACACTAGCCAAATGGGCAATCTCCAGGCTAATA  50

seq1  AGAGAAACAAGAAGGACCATGTCTGAGAAAGGCCATCTAACCCAAGGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAAGAAGGACCATGTCTGAGAAAGGCCATCTAACCCAAGGTTA  100

seq1  TCCCTTGGCTTCCACTCCTTGTACATCTCTCGCCCTAACACTTTGTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGCTTCCACTCCTTGTACATCTCTCGCCCTAACACTTTGTTAAG  150

seq1  AAGTGGTAAAGCAAGGGATGGCAAGCAGGGGTAGGGAAGAGGCACCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTAAAGCAAGGGATGGCAAGCAGGGGTAGGGAAGAGGCACCTGTG  200

seq1  AGAGCAGGTTTAACTGAAGTCGGAAGGAGAATTCAAGCAGTGGTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGTTTAACTGAAGTCGGAAGGAGAATTCAAGCAGTGGTTTTGTT  250

seq1  ATAACAATGTGTCTGTGACTTGGGGATGAGAGCTGCAGAGACATAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATGTGTCTGTGACTTGGGGATGAGAGCTGCAGAGACATAGTAAG  300

seq1  CTGTGTGCTGGAGGGGCCTTTGATGAGGGGGAGGGGAGAGAGCAAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCTGGAGGGGCCTTTGATGAGGGGGAGGGGAGAGAGCAAAAGGC  350

seq1  TGACAACTAGTAAGCCTCTGATAGTTCTACAGCCATGTAACCTTCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTAGTAAGCCTCTGATAGTTCTACAGCCATGTAACCTTCTTCCT  400

seq1  GCATCATGGTCCTCCTAAGGTACCTTTCTCTTCTCCATAAGTTATGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGGTCCTCCTAAGGTACCTTTCTCTTCTCCATAAGTTATGAACT  450

seq1  GTGTGACCCTATGTCTAGGTTATCTGGGAATAGCATCTATGCTCTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACCCTATGTCTAGGTTATCTGGGAATAGCATCTATGCTCTTTGTG  500

seq1  TCATATTAATAACACTTCTCTCCTCTTTTGGGTTGCAGGTGTTCTGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAATAACACTTCTCTCCTCTTTTGGGTTGCAGGTGTTCTGGATT  550

seq1  GGATGAACATTTTATATTCACTGGATAAGTAAACAGGCCTGCCTTGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAACATTTTATATTCACTGGATAAGTAAACAGGCCTGCCTTGTAAT  600

seq1  TAACTCACCTGGTTAATTATCCCTCTCCCCCAGGTATAAATGCAAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACCTGGTTAATTATCCCTCTCCCCCAGGTATAAATGCAAAACTT  650

seq1  GAAAACCCAAACACTGCACCCATAC-TTACATCAGAAATCCTAACCAGAA  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAAACCCAAACACTGCACCCATACTTTACATCAGAAATCCTAACCAGAA  700

seq1  TCGTTTTTTTTTTTTTTTGACTGATATTGTAACTCACCATAGCTCGGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTTTTTTTTTTTTGACTGATATTGTAACTCACCATAGCTCGGGAG  750

seq1  GTGACACTTCCCCAGGTTTAGAGACCACATACCTGACATCATCTTCTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACTTCCCCAGGTTTAGAGACCACATACCTGACATCATCTTCTGAG  800

seq1  TTCCACCTCCTTTC-AGGAGCATCTCTAACTTTTGTGGGACTATTGTGAC  848
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TTCCACCTCCTTTCAAGGAGCATCTCTAACTTTTTTGGGACTATTGTGAC  850

seq1  AGTTTGTCTTTATTGGCAGCTTATGGAATTTACCATCTCCAT-GGAAACA  897
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  AGTTTGTCTTTATTGGCAGCTTATGGAATTTA-CATCTCCATGGGAAACA  899

seq1  -CGCCTGTAGCTCTAGAAGGGTAATCCAAGACAGGTGCAAGTGAGA--CG  944
       | ||||||||||||||||||||||||||||||||||| |||||||   |
seq2  CCTCCTGTAGCTCTAGAAGGGTAATCCAAGACAGGTGCTAGTGAGAACGG  949

seq1  GGGCATCGGCATCCCA-TAGGCTGGAGTCCT-GAACTGATA-AATG-AGA  990
      |||||||||| | ||| |||||||||||||| || |||||| |||| |||
seq2  GGGCATCGGCTTTCCATTAGGCTGGAGTCCTGGACCTGATATAATGAAGA  999

seq1  AGAA  994
      ||||
seq2  AGAA  1003