BAC Information

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BAC

Clone NameB6Ng01-213O16
Chromosome1 (Build37)
Map Location 43,019,438 - 43,020,511
singlet/doubletsinglet
Overlap geneGpr45
Upstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9
Downstream geneLOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213O16.bB6Ng01-213O16.g
ACCGA031306GA031307
length1,2131,066
definitionB6Ng01-213O16.b B6Ng01-213O16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccggaccttcaaagaagacctgataccaattttcctcaaact
attccataaaatagaaacagaaggaacactacccaacttgttctatgaag
ccacaattactgatacctaaaccacacaaggacccaaccaaaaaagagaa
cttcagaccaatctagtttatgactatcgatgcaaaaatcctcaataaaa
ttcttgcaaactgaatccaaatacacatcaaaaccatcattcaccacaat
caagtaggcttcatcccagggatgcaaggttggcataatatacgaaaatc
cattaatgtaattcactatataaacaaactcaaaggaaaaaaaaatcaca
tgaccatctccttagatacaggaaaaaaaagcacttgacaaaatttaaca
ccccttcttgttaaaagtattggagaaatcaggaattcaagacccaggcc
taaacataataaaagcaatttactgcaaaccaatatcaaattaaatgaag
acatacttgaagcaattccacagaatctggggagaagacaagggtgccca
ctctccccagatctattcaacatagtacctgaagagctggctagaactat
cagacatcaaaatgagatcaaggggatacaaattggcaaagaagaaataa
aggtatcactatttgcagatgatatgatagtatatataagcgaccccaaa
aattctaccagagaacttctccagctgataaacaacttcagccaagtggc
cggatatagaattaactcaaataaatcagtagccttcctttatacaaatg
atatacagctaagaaagaaattaggtaaacaactcccttcacaataccac
aaataatataaaataccttggggtaactctaaccaacaagtgaaagacct
gtatgacagtaacttcaagtttctcagaaagaaattgaagaagatctcag
aaaatggagagatctcccatgcacatggatcagcagataacagtaaaaat
gggccatcctaccaaaggcaatctatagattcatgcatccccatcaaaat
cccaacacatttttcatgaaagagcattctccaaattcatctgaagcaaa
acccagattaggaaacactctacaataagatgactgcgaatcacagctga
cctcagatacctacgaagcatagtgataaaacctgccatgggtaccctgt
gtttccagaagtc
gaattcctagttctattaaaagctcaaggacctacataagtgatggcctt
cttactgcaaacgctctaggatattacagggaataggtctgtgtgtttat
ttcctgcctctctttttatgaagctgcaaggattgaatcttgaggctcca
acctgttgacttcatcctaatcctcattacctcccacaggcctttcctgt
aagcaccatgattaaatggagcttccctctcctaagaacacaataggcat
taaatctcagcctttgaagccttgggagacttatccagatgccataaaca
taggttccagaggtcttcagcgcattgaacaagaagatccaaataccagt
cctaagtgaaggcttcttccacataaaaggcaacaaattgcaaataacac
tgtggtttctgcttacagcagatgatacagatacagtgtcaccagagacc
ccacaatggtgccctaaacagtccttcactcacaggaaggaggcaacatg
ttttaagaccagtaggggtggtggatgccagactctgatggtcaagttcc
tcctggcagcttgcacaaagcatcaaacaaaaaaggaaaatgaatatata
ggagttaagagaaagaaagaaagagagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagagaaag
gctaacatggtggactccagtcccaataccagtggttacattaaatgtaa
atgacctaaatattccaaataaaagacaattggcagaatggattttaaaa
catcacttaagtatatggtatctataagaattcttctccagatataatga
tatagagtaaaatgatgcaaaaattataccatgctaatattgactctaaa
aggagaaactactacaattgcgagtatcaaatgaaagtagctcagtcaaa
caaagcaagcagatacagaggagggacaccacaccagaaaccatgtgcac
acacaaaaactgagcgtacatatagaaaacagggtagcctgaacaaaact
gatagaaaaatggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43019438_43020511
seq2: B6Ng01-213O16.g_69_1134

seq1  GAATTCCTAGTTCTATTAAAAGCTCAAGGACCTACATAAGTGATGGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTTCTATTAAAAGCTCAAGGACCTACATAAGTGATGGCCTT  50

seq1  CTTACTGCAAACGCTCTAGGATATTACAGGGAATAGGTCTGTGTGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCAAACGCTCTAGGATATTACAGGGAATAGGTCTGTGTGTTTAT  100

seq1  TTCCTGCCTCTCTTTTTATGAAGCTGCAAGGATTGAATCTTGAGGCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTCTCTTTTTATGAAGCTGCAAGGATTGAATCTTGAGGCTCCA  150

seq1  ACCTGTTGACTTCATCCTAATCCTCATTACCTCCCACAGGCCTTTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGACTTCATCCTAATCCTCATTACCTCCCACAGGCCTTTCCTGT  200

seq1  AAGCACCATGATTAAATGGAGCTTCCCTCTCCTAAGAACACAATAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCATGATTAAATGGAGCTTCCCTCTCCTAAGAACACAATAGGCAT  250

seq1  TAAATCTCAGCCTTTGAAGCCTTGGGAGACTTATCCAGATGCCATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCAGCCTTTGAAGCCTTGGGAGACTTATCCAGATGCCATAAACA  300

seq1  TAGGTTCCAGAGGTCTTCAGCGCATTGAACAAGAAGATCCAAATACCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCCAGAGGTCTTCAGCGCATTGAACAAGAAGATCCAAATACCAGT  350

seq1  CCTAAGTGAAGGCTTCTTCCACATAAAAGGCAACAAATTGCAAATAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTGAAGGCTTCTTCCACATAAAAGGCAACAAATTGCAAATAACAC  400

seq1  TGTGGTTTCTGCTTACAGCAGATGATACAGATACAGTGTCACCAGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTCTGCTTACAGCAGATGATACAGATACAGTGTCACCAGAGACC  450

seq1  CCACAATGGTGCCCTAAACAGTCCTTCACTCACAGGAAGGAGGCAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGGTGCCCTAAACAGTCCTTCACTCACAGGAAGGAGGCAACATG  500

seq1  TTTTAAGACCAGTAGGGGTGGTGGATGCCAGACTCTGATGGTCAAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGACCAGTAGGGGTGGTGGATGCCAGACTCTGATGGTCAAGTTCC  550

seq1  TCCTGGCAGCTTGCACAAAGCATCAAACAAAAAAGGAAAATGAATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGCTTGCACAAAGCATCAAACAAAAAAGGAAAATGAATATATA  600

seq1  GGAGTTAAGAGAAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAAGAGAAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAA  650

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAGAAAG  700

seq1  GCTAACATGGTGGACTCCAGTCCCAATACCAGTGGTTACATTAAATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATGGTGGACTCCAGTCCCAATACCAGTGGTTACATTAAATGTAA  750

seq1  ATGACCTAAATATTCCAAATAAAAGACAATTGGCAGAATGGATTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAAATATTCCAAATAAAAGACAATTGGCAGAATGGATTTTAAAA  800

seq1  CATCACTTAAGTATATGGTATCTATAAGAATTCTTCTCCAGATATAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTAAGTATATGGTATCTATAAGAATTCTTCTCCAGATATAATGA  850

seq1  TATAGAGTAAAATGATGCAAAAATTATACCATGCTAATATTGACTCTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTAAAATGATGCAAAAATTATACCATGCTAATATTGACTCTAAA  900

seq1  AGGAGAAACTACTACAATTGCGAGTATCAAATGAAAGTAGCTCAGGTCAA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGAGAAACTACTACAATTGCGAGTATCAAATGAAAGTAGCTCA-GTCAA  949

seq1  ACAAAGCAAGCAGATACAGA-GAGGGACACCACACCAAGAAACCATGTGC  999
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  ACAAAGCAAGCAGATACAGAGGAGGGACACCACACC-AGAAACCATGTGC  998

seq1  ACACACCAAAAACTGAGCGTACAATATAGAAAAACAGGGTAGGCCTGAAC  1049
      ||||| |||||||||||||||| |||||| ||||||||||| ||||||||
seq2  ACACA-CAAAAACTGAGCGTAC-ATATAG-AAAACAGGGTA-GCCTGAAC  1044

seq1  AAAAACTGATAGGAAAAAATGGGTA  1074
       |||||||||||  |||||||| ||
seq2  -AAAACTGATAG--AAAAATGGTTA  1066