BAC Information

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BAC

Clone NameB6Ng01-214B23
Chromosome1 (Build37)
Map Location 170,290,649 - 170,291,761
singlet/doubletsinglet
Overlap genePbx1
Upstream geneAldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214B23.bB6Ng01-214B23.g
ACCGA031459GA031460
length7891,144
definitionB6Ng01-214B23.b B6Ng01-214B23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatacagaaaatgtggtacatttacacaatggagtactactcagc
tattaaaaacaatggatttattaaattcttggacaaatggatgtatctgg
aggatatcatccttagtgaggtaacccaatcacaaaagaagtcattagat
atgcactcactgataagtggatattagcccagaaacatagaacacccaag
atacaatttgcaaaacacaagaaaatcaagaagagagaagaccaatgggt
ggatacatcattcctccttagaatagggaacaaaatacccatggaagggg
ttacagagacaaagtttggagctaagaggaaaggatggactatccagaga
ctaccccacctggggatccatcccataatcagccaccaaacccagacact
attgcatacgccagaaagattttgctgaagggaccctattatagctgtct
catatgagattatgccagtacctggcaaatacagaagtggatgctcacag
tcatctataagatgaaacacagggcccccaatggaaaagctagagaaagc
acccaaggagctgaaggggtctgcaaccttataggtggaacaacaatatg
aactaaccagtacccccagagctcgtgtctctatctgcatatgcagcaga
agatggcctagtcggccatcactgggaagagaggccccttggtattgcaa
atgttatatgccccagtacaggggaatgccagggccaagaagcaggagtg
tgtgcgtagaggagcagggtggagggagggtgtagggaa

gaattctctataagaaaggtcagtgaagatggctttctgtcaactccata
tccaggaggaagaaggttagggctggtgcgccagctcttacccatcttca
ttcagagcttggcttccccccattccaccactggaatcacaagagcctcc
tagcccctagggaaaatgggtggcatccccagaggcaagatgcagagcta
cgaggaacaggaggagcaaagccacgtgttccttttcttgacaacatcta
ccctagtccagccatgtcaggaaggtgctgaaagggatatgaatgcttcg
gctatggcaaggtcctatggtttcggggcagaacgatcataggtcaggcc
gagtaatcatgatgataacaataacagtatctgtatttgtccagagacga
ccggatggcgtgaagggaatcacattaaatccaagaggactcagataaaa
tgatgctaagggtcagaccgaatctaacaacagtctgtgatttgtggcca
tgccgctgctctaatttgcctctctacggctgatggcccatgaaggtgag
gggtgttattgactgttactgggcttggctcatagtacaagcaagtcaca
gcatcactggcttggtccccgactctgctacagtagatcacccttcaaag
gatatttctttctttcttttttttttaaatacatgaaaaggatcaaatgt
ggaccagatacattttcaattctttcatttgattttcccaccttgatttg
ctacaaaagcttttattacgttactgactttacatccatgttgtttttat
tcttgtttgtttaaagggcataaccagatgcaagtgtctttctactaaaa
caatatgtctttgtttatatattatctatgggtcgaactgtaaacagtaa
tggcaggggctgttcttttttcctatcacacttgcaaataattgtccctc
gtaggcctaagttagcaattgagcttcttcataaacttaaaattaattaa
ttgatttaagtaagtgaactttggccctcctccatgggtggggatttatc
ttctgtcaaaaggggtaacagcagagttgacaggcttttgaacatttcgt
cttctacctgaattttgcccactacttgttctcccgcccccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170290649_170291761
seq2: B6Ng01-214B23.g_72_1215

seq1  GAATTCTCTATAAGAAAGGTCAGTGAAGATGGCTTTCTGTCAACTCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATAAGAAAGGTCAGTGAAGATGGCTTTCTGTCAACTCCATA  50

seq1  TCCAGGAGGAAGAAGGTTAGGGCTGGTGCGCCAGCTCTTACCCATCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGGAAGAAGGTTAGGGCTGGTGCGCCAGCTCTTACCCATCTTCA  100

seq1  TTCAGAGCTTGGCTTCCCCCCATTCCACCACTGGAATCACAAGAGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCTTGGCTTCCCCCCATTCCACCACTGGAATCACAAGAGCCTCC  150

seq1  TAGCCCCTAGGGAAAATGGGTGGCATCCCCAGAGGCAAGATGCAGAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTAGGGAAAATGGGTGGCATCCCCAGAGGCAAGATGCAGAGCTA  200

seq1  CGAGGAACAGGAGGAGCAAAGCCACGTGTTCCTTTTCTTGACAACATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAACAGGAGGAGCAAAGCCACGTGTTCCTTTTCTTGACAACATCTA  250

seq1  CCCTAGTCCAGCCATGTCAGGAAGGTGCTGAAAGGGATATGAATGCTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTCCAGCCATGTCAGGAAGGTGCTGAAAGGGATATGAATGCTTCG  300

seq1  GCTATGGCAAGGTCCTATGGTTTCGGGGCAGAACGATCATAGGTCAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGCAAGGTCCTATGGTTTCGGGGCAGAACGATCATAGGTCAGGCC  350

seq1  GAGTAATCATGATGATAACAATAACAGTATCTGTATTTGTCCAGAGACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATCATGATGATAACAATAACAGTATCTGTATTTGTCCAGAGACGA  400

seq1  CCGGATGGCGTGAAGGGAATCACATTAAATCCAAGAGGACTCAGATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATGGCGTGAAGGGAATCACATTAAATCCAAGAGGACTCAGATAAAA  450

seq1  TGATGCTAAGGGTCAGACCGAATCTAACAACAGTCTGTGATTTGTGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTAAGGGTCAGACCGAATCTAACAACAGTCTGTGATTTGTGGCCA  500

seq1  TGCCGCTGCTCTAATTTGCCTCTCTACGGCTGATGGCCCATGAAGGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCTGCTCTAATTTGCCTCTCTACGGCTGATGGCCCATGAAGGTGAG  550

seq1  GGGTGTTATTGACTGTTACTGGGCTTGGCTCATAGTACAAGCAAGTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTATTGACTGTTACTGGGCTTGGCTCATAGTACAAGCAAGTCACA  600

seq1  GCATCACTGGCTTGGTCCCCGACTCTGCTACAGTAGATCACCCTTCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACTGGCTTGGTCCCCGACTCTGCTACAGTAGATCACCCTTCAAAG  650

seq1  GATATTTCTTTCTTTCTTTTTTTTTTAAATACATGAAAAGGATCAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCTTTCTTTCTTTTTTTTTTAAATACATGAAAAGGATCAAATGT  700

seq1  GGACCAGATACATTTTCAATTCTTTCATTTGATTTTCCCACCTTGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGATACATTTTCAATTCTTTCATTTGATTTTCCCACCTTGATTTG  750

seq1  CTACAAAAGC-TTTATTACGTTACTGACTTTACATCCATGTTG-TTTTAT  798
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  CTACAAAAGCTTTTATTACGTTACTGACTTTACATCCATGTTGTTTTTAT  800

seq1  TCTTGTTTGTTTAAA-GGCATAACCAGATGCAAGTGTCTTTCTACTAAAA  847
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTGTTTAAAGGGCATAACCAGATGCAAGTGTCTTTCTACTAAAA  850

seq1  CAATATGTC-TTGTTTATATATTATCTAT-GGTCG-ACTGTAAACAGTAA  894
      ||||||||| ||||||||||||||||||| ||||| ||||||||||||||
seq2  CAATATGTCTTTGTTTATATATTATCTATGGGTCGAACTGTAAACAGTAA  900

seq1  TGGCAGGGGCTGT--CTTTTTCCTATCACACTTGCAAATA--TGCCCC--  938
      |||||||||||||   ||||||||||||||||||||||||  || |||  
seq2  TGGCAGGGGCTGTTCTTTTTTCCTATCACACTTGCAAATAATTGTCCCTC  950

seq1  -GAGG-CTAAG-TAGCAA-TGAGCTTCTCCAATAAC-TAAAATAAAT--A  981
        ||| ||||| |||||| ||||||||| ||  ||| |||||| |||  |
seq2  GTAGGCCTAAGTTAGCAATTGAGCTTCTTCATAAACTTAAAATTAATTAA  1000

seq1  ATGAATTAAGTAAGTGAAC-TTGGCCCT-CTCCATGGTGGGGGATTTATC  1029
       ||| |||||||||||||| |||||||| ||||||||  |||||||||||
seq2  TTGATTTAAGTAAGTGAACTTTGGCCCTCCTCCATGGGTGGGGATTTATC  1050

seq1  -TCTGT--AAAAGGGTCACAGCAGAG-TGACA-GCTTTT--AC-TTTCCT  1071
       |||||  ||| |||| ||||||||| ||||| ||||||  || |||| |
seq2  TTCTGTCAAAAGGGGTAACAGCAGAGTTGACAGGCTTTTGAACATTTCGT  1100

seq1  CTCTTACTTAAATTTTTGCCCACT-CT--GTCCCCCGCCCCCATG  1113
      ||  ||| | || ||||||||||| ||   || ||||||||||||
seq2  CTTCTACCTGAA-TTTTGCCCACTACTTGTTCTCCCGCCCCCATG  1144


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