BAC Information

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BAC

Clone NameB6Ng01-214C05
Chromosome1 (Build37)
Map Location 69,710,787 - 69,711,997
singlet/doubletsinglet
Overlap geneIkzf2
Upstream geneErbb4, LOC667842, EG241084
Downstream geneSpag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214C05.bB6Ng01-214C05.g
ACCGA031470GA031471
length1,1141,218
definitionB6Ng01-214C05.b B6Ng01-214C05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccactagaatcactttataactgctggagggtttcttatcccttg
gtagatcctcttagccccctgtcccatccatgtgtctaagttctgtggtc
atctggattgtccatacataatggaaaatctaaaagttagtatctgcata
gagaagaaaatatgcaccatttgtcttttggagtctgggttacgtgactc
aggttgactgtttccagccctatccatttacctgtaaattttaatttttt
aatagctgaataatagtttattgtataaacagacctcatattcgttacct
gttcatcaattaatggaatcaaagctgtttttattttctgtctatcatga
atactacaacaaatgaacatggatgagcaagtatctttgtgataagatgt
agtcatttgggtgtctgtccaggataaaaggcctacactatgagatggac
tctgataaagtggccaagaatctgagactagatggatctcaggcgcaggg
gcaaatatgcaactactgttctgctaaagaaatatatctacaaaatgact
cctaatgacatatttctatatgcataggtcagtaccttgcccaattccca
taagagagatacttttttgtgtgcagtagataagaactaacatcagagcc
acaattggacaatgtgcagagagtgagagacgtaggagcactcgatccta
aatgagatgtcttcatcagactcctgttctcaaagctcaggaacctacag
agaagtctaaaagattttaagagacatgtggatgattctaacagtgtctt
ctagacacaaaagggctgggcacatatgacctcacagacactgtggcagc
atgcacaagtccctcacaggtttcagtcagagaaaatcccagcattgaaa
ggggatgtacaggcagagttccacccctaaccaagaagccatcgatagtt
tctttgaaaggaaaaacagttctctccaatggagtgtccactaggtccct
cagtcacagtccaggacagaccccatgcctggggagtagctgaccaccac
caccatcattcatcactaaccacatacatacacacatcacatacacaaca
tccacacacaatca

gaattcttttcactgaagggacaagagagcaagccaactaatccacgaga
ccatgtttattatctactgtattgaggctaccacagtaaacaagactgat
aatggtcctcaagtaagtactgggagaaaaaaaaagacataaattcaatt
atttcagacagtgtgaagtgaatcaaattgggaaatattaacaaatatct
aggaagggcttatattactactgagcttcagtcaagaggcaactaaagaa
atgagttaacaaagaaagacatcttcagtgaagtcacagcaagtgttgag
aggggaattaatttgtctcatcaagagatagaaagcaggaaagaatgaat
agaaaggggaccttacagactttgagaactgacttgcatttattctgctt
caatgcaaagttcttacaccattcacagaaatggagctgcggcctgattc
tggcttaggaagtccagctctctggactttagagattattggcaatgagg
aaggcagaaggaagtcagaagaccagttataaacggcctcagcattttag
gcttaaatgattgtgaacttaagttataggacaggatatggtaaaaccat
tcaggaactagttgagaatctccataggaccaatccacaagactggaaag
tttggagaaaacaatggccctagagattgttgttgtcaaatctatctgaa
gcctctatagacatcatgagtgaagaggatctgctgagtggagacagact
gcctgtctgaaaatgaagggaaataatagattctctattccatctactac
cagacatctgcagaaaggggcgattccccgttttcttcccttagagaaga
tgacatatctcacgctattaccgagagcttctcctggctgatgctaactc
ccagggtcacttactttacctcaatagacacaatgcagaaaatgcaaaca
cagcccgaaaaggaaactcagtaaccgatattcacggctaagctggggcc
tcacgacagcaaaggactgagcccaccacattcaaagcatgagggctttt
aaagcagttagtactttgcaataagaaccgctaagcaaaaataaatagcc
aacaggtctcccagaggctgtgaccattcggactggtgattctatcctgg
aaacacatccaattccaaatgccgtgtaaggttacacattgcaagaaagc
aggtgggcggctgacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69710787_69711997
seq2: B6Ng01-214C05.g_66_1283

seq1  GAATTCTTTTCACTGAAGGGACAAGAGAGCAAGCCAACTAATCCACGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCACTGAAGGGACAAGAGAGCAAGCCAACTAATCCACGAGA  50

seq1  CCATGTTTATTATCTACTGTATTGAGGCTACCACAGTAAACAAGACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTATTATCTACTGTATTGAGGCTACCACAGTAAACAAGACTGAT  100

seq1  AATGGTCCTCAAGTAAGTACTGGGAGAAAAAAAAAGACATAAATTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCCTCAAGTAAGTACTGGGAGAAAAAAAAAGACATAAATTCAATT  150

seq1  ATTTCAGACAGTGTGAAGTGAATCAAATTGGGAAATATTAACAAATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGACAGTGTGAAGTGAATCAAATTGGGAAATATTAACAAATATCT  200

seq1  AGGAAGGGCTTATATTACTACTGAGCTTCAGTCAAGAGGCAACTAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGCTTATATTACTACTGAGCTTCAGTCAAGAGGCAACTAAAGAA  250

seq1  ATGAGTTAACAAAGAAAGACATCTTCAGTGAAGTCACAGCAAGTGTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAACAAAGAAAGACATCTTCAGTGAAGTCACAGCAAGTGTTGAG  300

seq1  AGGGGAATTAATTTGTCTCATCAAGAGATAGAAAGCAGGAAAGAATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATTAATTTGTCTCATCAAGAGATAGAAAGCAGGAAAGAATGAAT  350

seq1  AGAAAGGGGACCTTACAGACTTTGAGAACTGACTTGCATTTATTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGACCTTACAGACTTTGAGAACTGACTTGCATTTATTCTGCTT  400

seq1  CAATGCAAAGTTCTTACACCATTCACAGAAATGGAGCTGCGGCCTGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAAGTTCTTACACCATTCACAGAAATGGAGCTGCGGCCTGATTC  450

seq1  TGGCTTAGGAAGTCCAGCTCTCTGGACTTTAGAGATTATTGGCAATGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGGAAGTCCAGCTCTCTGGACTTTAGAGATTATTGGCAATGAGG  500

seq1  AAGGCAGAAGGAAGTCAGAAGACCAGTTATAAACGGCCTCAGCATTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAAGGAAGTCAGAAGACCAGTTATAAACGGCCTCAGCATTTTAG  550

seq1  GCTTAAATGATTGTGAACTTAAGTTATAGGACAGGATATGGTAAAACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATGATTGTGAACTTAAGTTATAGGACAGGATATGGTAAAACCAT  600

seq1  TCAGGAACTAGTTGAGAATCTCCATAGGACCAATCCACAAGACTGGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACTAGTTGAGAATCTCCATAGGACCAATCCACAAGACTGGAAAG  650

seq1  TTTGGAGAAAACAATGGCCCTAGAGATTGTTGTTGTCAAATCTATCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAAAACAATGGCCCTAGAGATTGTTGTTGTCAAATCTATCTGAA  700

seq1  GCCTCTATAGACATCATGAGTGAAGAGGATCTGCTGAGTGGAGACAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATAGACATCATGAGTGAAGAGGATCTGCTGAGTGGAGACAGACT  750

seq1  GCCTGTCTGAAAATGAAGGGAAATAATAGATTCTCTATTCCATCTACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTGAAAATGAAGGGAAATAATAGATTCTCTATTCCATCTACTAC  800

seq1  CAGACATCTGCAGAAGGGGGCGATTCCCCGTTTTCTTCCCTTAGAGAAGA  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGACATCTGCAGAAAGGGGCGATTCCCCGTTTTCTTCCCTTAGAGAAGA  850

seq1  TGACATATCTCACGCTATTACCGAGAGCTTCTCCTGGCTGATGCTAACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATCTCACGCTATTACCGAGAGCTTCTCCTGGCTGATGCTAACTC  900

seq1  CCAGGGTCACTTACTTTACCTCAATAGACAACAATGCAGAAAATGCAAAC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAGGGTCACTTACTTTACCTCAATAGAC-ACAATGCAGAAAATGCAAAC  949

seq1  ACAG-CCGAAAAGGAAACTCAGTAACCGATATTCACGGCTAAGCTGGGGC  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCGAAAAGGAAACTCAGTAACCGATATTCACGGCTAAGCTGGGGC  999

seq1  CTCACGGACAGCAAAGAACTGAGCCCACCACATTCAAAGCATGAGGGCTT  1049
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCAC-GACAGCAAAGGACTGAGCCCACCACATTCAAAGCATGAGGGCTT  1048

seq1  TTAAAGCAGTAAGTACTTTGCAATAAGA--CGCTAAGC-ACAATTAATAG  1096
      |||||||||| |||||||||||||||||  |||||||| | ||| |||||
seq2  TTAAAGCAGTTAGTACTTTGCAATAAGAACCGCTAAGCAAAAATAAATAG  1098

seq1  -CAACA-GTCT-CCAGA-GCTGTGACCATTCAGACATGTGAT--CATCCT  1140
       ||||| |||| ||||| ||||||||||||| |||  |||||   |||||
seq2  CCAACAGGTCTCCCAGAGGCTGTGACCATTCGGACTGGTGATTCTATCCT  1148

seq1  GAAAACACATCAAAATTTCAAATAGC-TGTAAGTTTA-ACAATGAAAAGA  1188
      | |||||||||  |||| |||||  | |||||| ||| ||| ||  ||||
seq2  GGAAACACATC-CAATTCCAAATGCCGTGTAAGGTTACACATTG-CAAGA  1196

seq1  AAGCAGGTGGGGCCGGTGACCTC  1211
      |||||||| |||| | |||||||
seq2  AAGCAGGT-GGGCGGCTGACCTC  1218


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