BAC Information

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BAC

Clone NameB6Ng01-214G19
Chromosome1 (Build37)
Map Location 74,770,609 - 74,946,931
singlet/doubletdoublet
Overlap geneCyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4
Downstream geneCcdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214G19.bB6Ng01-214G19.g
ACCGA031677GA031678
length1,154218
definitionB6Ng01-214G19.b B6Ng01-214G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,945,778 - 74,946,931)(74,770,609 - 74,770,826)
sequence
gaattctgtagccttgggggagtgttatcaaaaagtcttggttcccccat
ttgcaaagtcagccgcctttctcacaatagtcagggcctccactaacctc
tttattctgctctctggacccctagccactctgccgagtccctttaacct
tttaacctcacagtgccagggttgtgcagtgtgggaaaaatctgggagag
gtgaactgaggtcttctgggcagactcaaatccactccacctctcagact
ctttccactgccacctgaaattttcactttcacctcctctcgggtccgtg
ttccaatccaaccatatctgagatcagcagacagcaaaaaggacaaacag
ggtcttcaggcacaggaaagaactcaccaccttcctcaaaaccccctaat
cttgtattctctgcagcccagtcagacgggctagactgggtctaggtagc
acacagctcagccagagttcgtttggccatggatcactagccacaaccta
gatctggaatgggccacccccatctcaattactttaaatgctgtgacctg
gcttgcaggaaggggattttcttacactctggcagaggagctcaaaccaa
gagctccatacaagacccagcagggaggttaggccagggttgagtgaggc
tgtcctgtgattccaggtgccttccatgcccccctcatgacaatgtatgg
tgacaaaggctctcatacagcagcaaggagcccctggctggtttcccatt
aggataaagaagaaatgaaggagagcagtaacccacacaccaagacagag
gcaatgccagggagacggtgtgataaataaaccaaattttcctagaactg
ctgtcttgtcccatcgcccacatgtgctctactacccaaccccctagtta
ccaggaggtcccactggatctgctgagcgcctgaggaatgtttgcaagtg
gttctgatgaggaaagggtgggttcttgatggaactagtcccaaggctag
actagttcccaggtgtcctcagatggagatgtgtagccctcatcctggcc
ttccccgaccagttctctctgtgtgacctgtctttccccttgaccttgct
gcatcgagccaattagctggatctccctttcctgtgtctttggaaggctc
acct
gaattctctctccagcccttccaatggattattaaaacaaacaaacaatc
cgcctgcctctgcagcctggtctacagagtgagttccaggacagccaggg
ctatacagagaaaccctgtcttgaaaaacaaacaaacaaaaaaaaacaca
taaagttgggtagtgaaggaaaaggggttgatctgggacagaggtatgag
ggagaatgggggggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74945778_74946931
seq2: B6Ng01-214G19.b_44_1197 (reverse)

seq1  AGGTGAG-CTGTCAAAGACACAGGAAA-GGAGATCCAGCTAAATGGCTCG  48
      ||||||| ||  ||||||||||||||| |||||||||||||| |||||||
seq2  AGGTGAGCCTTCCAAAGACACAGGAAAGGGAGATCCAGCTAATTGGCTCG  50

seq1  ATGCCAGCAAGGGCAAAGGGGAAAAGACAGTTC-CACAGGGAGAACCTGG  97
      ||| |||||||| |||  ||| |||||||| || ||||| ||||| ||||
seq2  ATG-CAGCAAGGTCAA--GGGGAAAGACAGGTCACACAGAGAGAA-CTGG  96

seq1  TCGGGG-AGGCCAGGATGGGGGCTACACATCTCCATCTGAGGACACCT-G  145
      |||||| ||||||||||| ||||||||||||||||||||||||||||| |
seq2  TCGGGGAAGGCCAGGATGAGGGCTACACATCTCCATCTGAGGACACCTGG  146

seq1  GACCTAGTCTAGCCTTGGGACTAGTTCCATCAAGAACCCACCCTTTCCTC  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGTCTAGCCTTGGGACTAGTTCCATCAAGAACCCACCCTTTCCTC  196

seq1  ATCAGAACCACTTTGCAAACATTCCTCAGGCGCTCAGCAGATCCAGTGGG  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACCAC-TTGCAAACATTCCTCAGGCGCTCAGCAGATCCAGTGGG  245

seq1  ACCTCCTGGTAACTAGGGGGTTGGGTAGTAGAGCACATGTGGGCGATGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGGTAACTAGGGGGTTGGGTAGTAGAGCACATGTGGGCGATGGG  295

seq1  ACAAGACAGCAGTTCTAGGAAAATTTGGTTTATTTATCACACCGTCTCCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAGCAGTTCTAGGAAAATTTGGTTTATTTATCACACCGTCTCCC  345

seq1  TGGCATTGCCTCTGTCTTGGTGTGTGGGTTACTGCTCTCCTTCATTTCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGCCTCTGTCTTGGTGTGTGGGTTACTGCTCTCCTTCATTTCTT  395

seq1  CTTTATCCTAATGGGAAACCAGCCAGGGGCTCCTTGCTGCTGTATGAGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCTAATGGGAAACCAGCCAGGGGCTCCTTGCTGCTGTATGAGAG  445

seq1  CCTTTGTCACCATACATTGTCATGAGGGGGGCATGGAAGGCACCTGGAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCACCATACATTGTCATGAGGGGGGCATGGAAGGCACCTGGAAT  495

seq1  CACAGGACAGCCTCACTCAACCCTGGCCTAACCTCCCTGCTGGGTCTTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACAGCCTCACTCAACCCTGGCCTAACCTCCCTGCTGGGTCTTGT  545

seq1  ATGGAGCTCTTGGTTTGAGCTCCTCTGCCAGAGTGTAAGAAAATCCCCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTCTTGGTTTGAGCTCCTCTGCCAGAGTGTAAGAAAATCCCCTT  595

seq1  CCTGCAAGCCAGGTCACAGCATTTAAAGTAATTGAGATGGGGGTGGCCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGCCAGGTCACAGCATTTAAAGTAATTGAGATGGGGGTGGCCCA  645

seq1  TTCCAGATCTAGGTTGTGGCTAGTGATCCATGGCCAAACGAACTCTGGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATCTAGGTTGTGGCTAGTGATCCATGGCCAAACGAACTCTGGCT  695

seq1  GAGCTGTGTGCTACCTAGACCCAGTCTAGCCCGTCTGACTGGGCTGCAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTGCTACCTAGACCCAGTCTAGCCCGTCTGACTGGGCTGCAGA  745

seq1  GAATACAAGATTAGGGGGTTTTGAGGAAGGTGGTGAGTTCTTTCCTGTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAAGATTAGGGGGTTTTGAGGAAGGTGGTGAGTTCTTTCCTGTGC  795

seq1  CTGAAGACCCTGTTTGTCCTTTTTGCTGTCTGCTGATCTCAGATATGGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACCCTGTTTGTCCTTTTTGCTGTCTGCTGATCTCAGATATGGTT  845

seq1  GGATTGGAACACGGACCCGAGAGGAGGTGAAAGTGAAAATTTCAGGTGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAACACGGACCCGAGAGGAGGTGAAAGTGAAAATTTCAGGTGGC  895

seq1  AGTGGAAAGAGTCTGAGAGGTGGAGTGGATTTGAGTCTGCCCAGAAGACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAGAGTCTGAGAGGTGGAGTGGATTTGAGTCTGCCCAGAAGACC  945

seq1  TCAGTTCACCTCTCCCAGATTTTTCCCACACTGCACAACCCTGGCACTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCACCTCTCCCAGATTTTTCCCACACTGCACAACCCTGGCACTGT  995

seq1  GAGGTTAAAAGGTTAAAGGGACTCGGCAGAGTGGCTAGGGGTCCAGAGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAAAAGGTTAAAGGGACTCGGCAGAGTGGCTAGGGGTCCAGAGAG  1045

seq1  CAGAATAAAGAGGTTAGTGGAGGCCCTGACTATTGTGAGAAAGGCGGCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAAGAGGTTAGTGGAGGCCCTGACTATTGTGAGAAAGGCGGCTG  1095

seq1  ACTTTGCAAATGGGGGAACCAAGACTTTTTGATAACACTCCCCCAAGGCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCAAATGGGGGAACCAAGACTTTTTGATAACACTCCCCCAAGGCT  1145

seq1  ACAGAATTC  1154
      |||||||||
seq2  ACAGAATTC  1154

seq1: chr1_74770609_74770826
seq2: B6Ng01-214G19.g_61_278

seq1  GAATTCTCTCTCCAGCCCTTCCAATGGATTATTAAAACAAACAAACAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCAGCCCTTCCAATGGATTATTAAAACAAACAAACAATC  50

seq1  CGCCTGCCTCTGCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCTCTGCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGG  100

seq1  CTATACAGAGAAACCCTGTCTTGAAAAACAAACAAACAAAAAAAAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGAAACCCTGTCTTGAAAAACAAACAAACAAAAAAAAACACA  150

seq1  TAAAGTTGGGTAGTGAAGGAAAAGGGGTTGATCTGGGACAGAGGTATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTGGGTAGTGAAGGAAAAGGGGTTGATCTGGGACAGAGGTATGAG  200

seq1  GGAGAAGCGGGGGGTGAA  218
      ||||||  ||||||||||
seq2  GGAGAATGGGGGGGTGAA  218