BAC Information

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BAC

Clone NameB6Ng01-214H12
Chromosome1 (Build37)
Map Location 139,012,677 - 139,013,842
singlet/doubletsinglet
Overlap geneLOC100042567
Upstream geneCacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214H12.bB6Ng01-214H12.g
ACCGA031709GA031710
length1,2291,168
definitionB6Ng01-214H12.b B6Ng01-214H12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
aattgccgagtcggtccgtaaatatggaaccaatgctaattttaccttgg
tgcagttagacaggcttgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agcgctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcagacaaactaccattggggagcttatgccca
agtttcctccacggctattagggcctggaaggcgctctcccgagcaggtg
aaaccactggtcaattaacaaaagttgtccagggacctcaggaatccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
gtcagagcaagctgcgcctctgatagaacagctaatctatgagcaagcca
caaagggagtgccgagcggccatagccccagaaagaacaaaggcttacaa
gactggctcagggtctgtcgagagcttgggggacctctcaccaatgcagg
cttagcggccgccatcctccaatctcagaaccgctccatgggcagaaata
atcagaggacatgttttactgcggaaagcctgggccattttagaaagatt
gcagagctccagattaacaggagggacttctcactcttgctcctagtggt
ggcaagtaatcatagagcttgaccattcgcttctgtgaggatatatgggc
agattctttcccactgaatgtcattcgctatgtgccaatacggtctatca
ggcccttggttcgaaggtcgccctcaaga
gaattcacattgatgattactaaagatgtgctcattattttaaatttggc
aaaaattaaagaagcataaaaggagatcgctaataatcatattttaagta
gtaacgttaattttggtgaatttctttctagtctttttgtcttcctttgc
taataactttacatgacatttagggcatcaaataacagaagaagatgtga
ggagaaaattagttgaagaacatgaataatgaaaataaaaaaattaaaac
atccaaacaagtaagtgtgccttcgaacaaccatgatcatgttctccacc
tagtaggtaggcaagtatgaggtaaaaggtaacactggctatgagggaag
acctaggcaaaggcatccttccagtgctgagggcatgaaagtggcccagt
ttccctggtgctgacacaaatgaaaaaagaagtttttaccaaatactcaa
gttccaacaacctggttgtctgccagtaattcaaggtacaaataaggttc
ctttggaaaaacaaaaacaaaaacaaaagaaaaacaaaaaaaccagaaac
agttcatttatctctcacccgaaacagctgcacaaatgccttccctagca
atagttacgtgaactttccctgttgtcaatgaaagcacacagaaaagaca
tatactcagacttggaatgtaataagtttgaaggctattcataagtacgc
ctggcttaccttgagcagtgaagtacaatccatcttggaaccagttgtat
acactattgcttctgcatcatcactaggaatgccaatctgatggcatagc
acccacagggctgttattccaaagaggtcttgagaaacccacaggtcttg
gacaagataggaaactgttctaaactgttctaaaacttctgataaattat
agataattaacccttgacactcgccttcccccattccacctagcctctgc
taatgacccactagactccagcttctggtggtcccatctcagtcaccaca
tgctcataaagcatggtgactttggtcttcccatgccctgccttattgca
actcagtatgtcctccaagggtcattccttcatgatggattgaacaccat
ctccctccgatatatcaatgcttcaataatgaatgatgtatgaggggtgt
ccttgaccctgtggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139012677_139013842
seq2: B6Ng01-214H12.g_68_1235

seq1  GAATTCACATTGATGATTACTAAAGATGTGCTCATTATTTTAAATTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGATGATTACTAAAGATGTGCTCATTATTTTAAATTTGGC  50

seq1  AAAAATTAAAGAAGCATAAAAGGAGATCGCTAATAATCATATTTTAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAAGAAGCATAAAAGGAGATCGCTAATAATCATATTTTAAGTA  100

seq1  GTAACGTTAATTTTGGTGAATTTCTTTCTAGTCTTTTTGTCTTCCTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGTTAATTTTGGTGAATTTCTTTCTAGTCTTTTTGTCTTCCTTTGC  150

seq1  TAATAACTTTACATGACATTTAGGGCATCAAATAACAGAAGAAGATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTTTACATGACATTTAGGGCATCAAATAACAGAAGAAGATGTGA  200

seq1  GGAGAAAATTAGTTGAAGAACATGAATAATGAAAATAAAAAAATTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAATTAGTTGAAGAACATGAATAATGAAAATAAAAAAATTAAAAC  250

seq1  ATCCAAACAAGTAAGTGTGCCTTCGAACAACCATGATCATGTTCTCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACAAGTAAGTGTGCCTTCGAACAACCATGATCATGTTCTCCACC  300

seq1  TAGTAGGTAGGCAAGTATGAGGTAAAAGGTAACACTGGCTATGAGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGTAGGCAAGTATGAGGTAAAAGGTAACACTGGCTATGAGGGAAG  350

seq1  ACCTAGGCAAAGGCATCCTTCCAGTGCTGAGGGCATGAAAGTGGCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGCAAAGGCATCCTTCCAGTGCTGAGGGCATGAAAGTGGCCCAGT  400

seq1  TTCCCTGGTGCTGACACAAATGAAAAAAGAAGTTTTTACCAAATACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGTGCTGACACAAATGAAAAAAGAAGTTTTTACCAAATACTCAA  450

seq1  GTTCCAACAACCTGGTTGTCTGCCAGTAATTCAAGGTACAAATAAGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAACAACCTGGTTGTCTGCCAGTAATTCAAGGTACAAATAAGGTTC  500

seq1  CTTTGGAAAAACAAAAACAAAAACAAAAGAAAAACAAAAAAACCAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAAAACAAAAACAAAAACAAAAGAAAAACAAAAAAACCAGAAAC  550

seq1  AGTTCATTTATCTCTCACCCGAAACAGCTGCACAAATGCCTTCCCTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTTATCTCTCACCCGAAACAGCTGCACAAATGCCTTCCCTAGCA  600

seq1  ATAGTTACGTGAACTTTCCCTGTTGTCAATGAAAGCACACAGAAAAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACGTGAACTTTCCCTGTTGTCAATGAAAGCACACAGAAAAGACA  650

seq1  TATACTCAGACTTGGAATGTAATAAGTTTGAAGGCTATTCATAAGTACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAGACTTGGAATGTAATAAGTTTGAAGGCTATTCATAAGTACGC  700

seq1  CTGGCTTACCTTGAGCAGTGAAGTACAATCCATCTTGGAACCAGTTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTACCTTGAGCAGTGAAGTACAATCCATCTTGGAACCAGTTGTAT  750

seq1  ACACTATTGCTTCTGCATCATCACTAGGAATGCCAATCTGATGGCATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTGCTTCTGCATCATCACTAGGAATGCCAATCTGATGGCATAGC  800

seq1  ACCCACAGGGCTGTTATTCCAAAGAGGTCTTGAGAAACCCACAGGTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCCACAGGGCTGTTATTCCAAAGAGGTCTTGAGAAACCCACAGGTC-TT  849

seq1  GGACAAGATAGGAAACTGTTCTAAACTGTTCTAAAACTTCTGATAAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGATAGGAAACTGTTCTAAACTGTTCTAAAACTTCTGATAAATTA  899

seq1  TAGATAATTAACCCTTGACACTCGCCTTCCCCCATTCCACCTAGCCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATTAACCCTTGACACTCGCCTTCCCCCATTCCACCTAGCCTCTG  949

seq1  CTAATGA-CCACTAGACTCCAGCTTCT-GTGGTCCCATCTCAGGTCA-CA  997
      ||||||| ||||||||||||||||||| |||||||||||||| |||| ||
seq2  CTAATGACCCACTAGACTCCAGCTTCTGGTGGTCCCATCTCA-GTCACCA  998

seq1  CATGCTCATAAAGCAT-GTGACTTTGGTCTTTCCATG-CCTGGCTTATTG  1045
      |||||||||||||||| |||||||||||||| ||||| |||| |||||||
seq2  CATGCTCATAAAGCATGGTGACTTTGGTCTTCCCATGCCCTGCCTTATTG  1048

seq1  C-ACTCAGTATGTCCTCCA--GGTCCATCC-TCATGGTTGGAAATGACAC  1091
      | |||||||||||||||||  ||||  ||| |||| | ||||    ||||
seq2  CAACTCAGTATGTCCTCCAAGGGTCATTCCTTCAT-GATGGATTGAACAC  1097

seq1  AATCT-CCTCCGTGTATATCAATGGTGTCATATATGAATATGATGTATGA  1140
       |||| ||||||  |||||||||| | |||   ||||  |||||||||||
seq2  CATCTCCCTCCG-ATATATCAATGCT-TCAATAATGA--ATGATGTATGA  1143

seq1  GGGGTGGCCTTGACACGTGTGGAGAC  1166
      |||||| ||||||| | |||||||||
seq2  GGGGTGTCCTTGAC-CCTGTGGAGAC  1168