BAC Information

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BAC

Clone NameB6Ng01-214L22
Chromosome1 (Build37)
Map Location 189,967,706 - 190,116,603
singlet/doubletdoublet
Overlap geneEsrrg, Ush2a
Upstream geneSpata17, Gpatch2, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214L22.bB6Ng01-214L22.g
ACCGA031911GA031912
length1,173182
definitionB6Ng01-214L22.b B6Ng01-214L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,115,434 - 190,116,603)(189,967,706 - 189,967,889)
sequence
gaattcacttttctaaaattgtcatcaattgagaaactttatataactga
tgcacaaaaattatatgcttcttatgggatcttgtaaagtattctaaaac
agacatatattaagtatcacctaggatagaagctgagaaacagttttctt
ctttctatggcactggggattaaaccctagtggccagaagacaattgctt
tccatcgggtgttctcccagtcccacgaactggatggtgctcagacttcc
tttcttgcttttctcttttttaaccctataaacattaatattttatctaa
taatatttaaactaccatatactcaatacgtgtggcatattgactcataa
tggtattttcatgtaagaatatggtagctttgagtctccaccaaacagac
ttgccctctctacactcaccagccacttgtgactgaccccctttgtgtca
attggtgattttttttttgcttccatttcttgtcttatgtatgtgcatga
tttaatttatcttttaaaaatttatgattcacaacagagaacaaacaaat
atttatctcggtgagactgacttaatgcacttaagcagattgtccctgcg
tgtatctattttcttctttgtttaatggcccactaattactcaattgtgt
catataatttccatgaacttgcatgcgttccgctgcctctgtttttgatt
tctcaattgtaaaatgagttttgtgagttgtaccatgatgcattttaaag
gaagtgccacggaaagatcagaagactgtgtcttctgcagcatttagagg
ctatgtcgtgtagacgtcggttagggccagttgatcagctaagatgtttc
cctgctttgacttttttttcaggaagtcccactgtctatggcgaggcccc
aaagcttctgctataggatgggatcaactggtgttcttatgtagttacaa
atatcttatgaaattgaatgtcctagggtccagtgtaagaataatcataa
ctacaacatctcttcactggttgctcatgccacagtgaacagcttaccta
gttgaattgaaattctctcatttgtcataattaggtctgtggcgctgctt
ggctctccagtcttactggcccaaggaacctgtttttcattcctttcatt
tcaaggtagtggctgttctaagg

tttgtccaattgattttcattttagagaataaaaagtgaaatcctcctgt
atttggaaagctcttgactatttaggactggggtggatatgtgggtggga
tgtaaggatggatggatggcgtctgggtgtatatgcagatacatgggtgg
tatccatgtctccacctagatggcttgggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190115434_190116603
seq2: B6Ng01-214L22.b_49_1221 (reverse)

seq1  CCTTAG-ACAGGCACTACCTTGAAATG-AAGAGATAGAAAACAGGGTTCC  48
      |||||| |||| ||||||||||||||| |||  ||  |||||||| | | 
seq2  CCTTAGAACAGCCACTACCTTGAAATGAAAGGAATGAAAAACAGGTTCCT  50

seq1  TGGGCAAGTAGGACTGGAGAG-CAAGCAGCGGCCACAGACCTAA-TATGA  96
      ||||| |||| |||||||||| |||||||| ||||||||||||| |||||
seq2  TGGGCCAGTAAGACTGGAGAGCCAAGCAGC-GCCACAGACCTAATTATGA  99

seq1  CAAATGAG---AATTCAAATCAAAACTAGTTAAGCTGTTCACTGTGGCAT  143
      ||||||||   | ||||| ||  |||||| ||||||||||||||||||||
seq2  CAAATGAGAGAATTTCAATTC--AACTAGGTAAGCTGTTCACTGTGGCAT  147

seq1  GAGCAACCAGTGAAGAGGATGTTGTAGTTATGATTATTCTTACACTGGAC  193
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGCAACCAGTGAAGA-GATGTTGTAGTTATGATTATTCTTACACTGGAC  196

seq1  CCTAGGACATTCAATTTCATAAGATATTTGTAACTACATAAGAACACCAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACATTCAATTTCATAAGATATTTGTAACTACATAAGAACACCAG  246

seq1  TTGATCCCATCCTATAGCAGAAGCTTTGGGGCCTCGCCATAGACAGTGGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCATCCTATAGCAGAAGCTTTGGGGCCTCGCCATAGACAGTGGG  296

seq1  ACTTCCTGAAAAAAAAGTCAAAGCAGGGAAACATCTTAGCTGATCAACTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGAAAAAAAAGTCAAAGCAGGGAAACATCTTAGCTGATCAACTG  346

seq1  GCCCTAACCGACGTCTACACGACATAGCCTCTAAATGCTGCAGAAGACAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAACCGACGTCTACACGACATAGCCTCTAAATGCTGCAGAAGACAC  396

seq1  AGTCTTCTGATCTTTCCGTGGCACTTCCTTTAAAATGCATCATGGTACAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTGATCTTTCCGTGGCACTTCCTTTAAAATGCATCATGGTACAA  446

seq1  CTCACAAAACTCATTTTACAATTGAGAAATCAAAAACAGAGGCAGCGGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAACTCATTTTACAATTGAGAAATCAAAAACAGAGGCAGCGGAA  496

seq1  CGCATGCAAGTTCATGGAAATTATATGACACAATTGAGTAATTAGTGGGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCAAGTTCATGGAAATTATATGACACAATTGAGTAATTAGTGGGC  546

seq1  CATTAAACAAAGAAGAAAATAGATACACGCAGGGACAATCTGCTTAAGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACAAAGAAGAAAATAGATACACGCAGGGACAATCTGCTTAAGTG  596

seq1  CATTAAGTCAGTCTCACCGAGATAAATATTTGTTTGTTCTCTGTTGTGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTCAGTCTCACCGAGATAAATATTTGTTTGTTCTCTGTTGTGAA  646

seq1  TCATAAATTTTTAAAAGATAAATTAAATCATGCACATACATAAGACAAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTTTTAAAAGATAAATTAAATCATGCACATACATAAGACAAGA  696

seq1  AATGGAAGCAAAAAAAAAATCACCAATTGACACAAAGGGGGTCAGTCACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGCAAAAAAAAAATCACCAATTGACACAAAGGGGGTCAGTCACA  746

seq1  AGTGGCTGGTGAGTGTAGAGAGGGCAAGTCTGTTTGGTGGAGACTCAAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGGTGAGTGTAGAGAGGGCAAGTCTGTTTGGTGGAGACTCAAAG  796

seq1  CTACCATATTCTTACATGAAAATACCATTATGAGTCAATATGCCACACGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATATTCTTACATGAAAATACCATTATGAGTCAATATGCCACACGT  846

seq1  ATTGAGTATATGGTAGTTTAAATATTATTAGATAAAATATTAATGTTTAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTATATGGTAGTTTAAATATTATTAGATAAAATATTAATGTTTAT  896

seq1  AGGGTTAAAAAAGAGAAAAGCAAGAAAGGAAGTCTGAGCACCATCCAGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAAAAAAGAGAAAAGCAAGAAAGGAAGTCTGAGCACCATCCAGTT  946

seq1  CGTGGGACTGGGAGAACACCCGATGGAAAGCAATTGTCTTCTGGCCACTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGACTGGGAGAACACCCGATGGAAAGCAATTGTCTTCTGGCCACTA  996

seq1  GGGTTTAATCCCCAGTGCCATAGAAAGAAGAAAACTGTTTCTCAGCTTCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAATCCCCAGTGCCATAGAAAGAAGAAAACTGTTTCTCAGCTTCT  1046

seq1  ATCCTAGGTGATACTTAATATATGTCTGTTTTAGAATACTTTACAAGATC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGTGATACTTAATATATGTCTGTTTTAGAATACTTTACAAGATC  1096

seq1  CCATAAGAAGCATATAATTTTTGTGCATCAGTTATATAAAGTTTCTCAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGAAGCATATAATTTTTGTGCATCAGTTATATAAAGTTTCTCAAT  1146

seq1  TGATGACAATTTTAGAAAAGTGAATTC  1170
      |||||||||||||||||||||||||||
seq2  TGATGACAATTTTAGAAAAGTGAATTC  1173


seq1: chr1_189967706_189967889
seq2: B6Ng01-214L22.g_67_248

seq1  TTTGTCCAATTGATTTTCATTTTAGAGAATAAAAAGTGAAATCCTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAATTGATTTTCATTTTAGAGAATAAAAAGTGAAATCCTCCTGT  50

seq1  ATTTGGAAAGCTCTTGACTATTTAGGACTGGGGTGGATATGTGGGTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAAGCTCTTGACTATTTAGGACTGGGGTGGATATGTGGGTGGGA  100

seq1  TGTAAGGATGGATGGATGGATGGCAGGGTGTATATGCAGATAGATGGGTG  150
      |||||||||||||||||||  | | ||||||||||||||||| |||||||
seq2  TGTAAGGATGGATGGATGG-CGTCTGGGTGTATATGCAGATACATGGGTG  149

seq1  GACAGCCATGTATCTACCTAGATGGCTTGGGACA  184
      |  | |||||| || |||||||||||||||||||
seq2  G-TATCCATGTCTCCACCTAGATGGCTTGGGACA  182


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