BAC Information

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BAC

Clone NameB6Ng01-214O08
Chromosome1 (Build37)
Map Location 121,803,880 - 121,964,424
singlet/doubletdoublet
Overlap geneTmem177, Gm101, Sctr, Tmem37
Upstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863
Downstream geneDbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214O08.bB6Ng01-214O08.g
ACCGA032021GA032022
length5161,184
definitionB6Ng01-214O08.b B6Ng01-214O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,963,903 - 121,964,424)(121,803,880 - 121,805,026)
sequence
actgcctccttcctcttcttcctcaatgccgccagcggccttcacatcaa
cagcctcactcagccctgggaccctccagcagggaccctggcttacagaa
agcgaggttatgatgggacttctctgatataggacctctggctgagattg
aataggacaaccaatgaccttgacactgcctcttaggcacttagctctag
caatgccctggaagtctcttcagctgagctccagggcaaaggcagaaggg
tgcctctgtacgacggcacagtgagctggataggttagtcatgctattaa
aatctcaatttgaaagtaaggagagtatcctaaaatgtcttcctacggtg
ttttcttccctgactggaatagggtttgaaagagaccaaaagtcagttcc
agaatggctgcccagctacgtagggctcatgcctgtttcattgattacag
tgggatgtgggctggagaggtcctatgactctttttaaatgtgtgtgtgt
gtgtgtgtgtgtgtgt
gaattctctggaaggtttcctgggcccgtggggagggagtttcagagcca
cagtccccactggaggaagctgcttcagggggcactgtcaccgtgcccat
gcacagctttatgtgaatatggtgactggatggatctaggcagttacagc
tgccagggaaatctgctcccactgcaggtttgaagaggctttcatggctt
ccagacaaaaggttggccacaccccatgaatgcagggccagaagctggga
agccagaatctgtcaccttgagggtaaagttcaggtccctttgaatatgg
tcacacacacacacacacacacacacacacacacacacacacacacacac
atgcagagagagagagagaggagaaagagagagagagagagtgcaaatta
gctaagactgtgggagcagggagcatgtaaacacatgggaaagtctatga
gtggaaactaagatttcgaccaggagcaggagagagaaataagcagctac
ttcagggactagtttcctcctctacccagggctagcttcctgtattggtg
ttttcagctgttacaagaaaaaacttaaggctggatcttttttttttttt
taagaggtttatttagctcataattctggaggttcaggaaaatatcacct
tcttcttcatgctcatctctggtgacaccttgaagaaggtgttcatggaa
gagggtacaatatcgggaagccatggggggaaggacttgctctttggata
gggttttggcctaggtcagtcttgcctagaattcaccactacgtaaccca
tgttaacctctaaccacttccaacctaccaagtgttggggttcacatgtg
ttgaagcacccatggcatgtttaataatttctaagaaaagggtttcacct
gtgttagcatagggctggccttcaaactaaataattccctcctggcccca
aaaatgctggcaatttccagatgtataccacagtggttgaactctttgca
ctgggtctttgctctttaattctaacaactgttgccttggtatggtggtt
caatctggcagcaacagcttacttcagaaagcttgagcttggcaaatgtc
aacccaagggagaacctctatctcaagactaagttgagccaagcttgata
cttggcctgtcgaaggctcactgtgctaaggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_121963903_121964424
seq2: B6Ng01-214O08.b_49_570 (reverse)

seq1  ACACACACACACACACACACACACACATTTAAAAAGAGTCATAGGACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACATTTAAAAAGAGTCATAGGACCTC  50

seq1  TCCAGCCCACATCCCACTGTAATCAATGAAACAGGCATGAGCCCTACGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCACATCCCACTGTAATCAATGAAACAGGCATGAGCCCTACGTA  100

seq1  GCTGGGCAGCCATTCTGGAACTGACTTTTGGTCTCTTTCAAACCCTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGCCATTCTGGAACTGACTTTTGGTCTCTTTCAAACCCTATTC  150

seq1  CAGTCAGGGAAGAAAACACCGTAGGAAGACATTTTAGGATACTCTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGGAAGAAAACACCGTAGGAAGACATTTTAGGATACTCTCCTTA  200

seq1  CTTTCAAATTGAGATTTTAATAGCATGACTAACCTATCCAGCTCACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATTGAGATTTTAATAGCATGACTAACCTATCCAGCTCACTGTG  250

seq1  CCGTCGTACAGAGGCACCCTTCTGCCTTTGCCCTGGAGCTCAGCTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCGTACAGAGGCACCCTTCTGCCTTTGCCCTGGAGCTCAGCTGAAGA  300

seq1  GACTTCCAGGGCATTGCTAGAGCTAAGTGCCTAAGAGGCAGTGTCAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAGGGCATTGCTAGAGCTAAGTGCCTAAGAGGCAGTGTCAAGGT  350

seq1  CATTGGTTGTCCTATTCAATCTCAGCCAGAGGTCCTATATCAGAGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTGTCCTATTCAATCTCAGCCAGAGGTCCTATATCAGAGAAGTC  400

seq1  CCATCATAACCTCGCTTTCTGTAAGCCAGGGTCCCTGCTGGAGGGTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATAACCTCGCTTTCTGTAAGCCAGGGTCCCTGCTGGAGGGTCCCA  450

seq1  GGGCTGAGTGAGGCTGTTGATGTGAAGGCCGCTGGCGGCATTGAGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGTGAGGCTGTTGATGTGAAGGCCGCTGGCGGCATTGAGGAAGA  500

seq1  AGAGGAAGGAGGCAGTGAATTC  522
      ||||||||||||||||||||||
seq2  AGAGGAAGGAGGCAGTGAATTC  522

seq1: chr1_121803880_121805026
seq2: B6Ng01-214O08.g_68_1251

seq1  GAATTCTCTGGAAGGTTTCCTGGGCCCGTGGGGAGGGAGTTTCAGAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAAGGTTTCCTGGGCCCGTGGGGAGGGAGTTTCAGAGCCA  50

seq1  CAGTCCCCACTGGAGGAAGCTGCTTCAGGGGGCACTGTCACCGTGCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCCACTGGAGGAAGCTGCTTCAGGGGGCACTGTCACCGTGCCCAT  100

seq1  GCACAGCTTTATGTGAATATGGTGACTGGATGGATCTAGGCAGTTACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTTTATGTGAATATGGTGACTGGATGGATCTAGGCAGTTACAGC  150

seq1  TGCCAGGGAAATCTGCTCCCACTGCAGGTTTGAAGAGGCTTTCATGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGAAATCTGCTCCCACTGCAGGTTTGAAGAGGCTTTCATGGCTT  200

seq1  CCAGACAAAAGGTTGGCCACACCCCATGAATGCAGGGCCAGAAGCTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAAAGGTTGGCCACACCCCATGAATGCAGGGCCAGAAGCTGGGA  250

seq1  AGCCAGAATCTGTCACCTTGAGGGTAAAGTTCAGGTCCCTTTGAATATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATCTGTCACCTTGAGGGTAAAGTTCAGGTCCCTTTGAATATGG  300

seq1  TCACACACACACACACACACACACACACACACACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACACACACACACACACAC  350

seq1  ATGCAGAGAGAGAGAGAGAGGAGAAAGAGAGAGAGAGAGAGTGCAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGAGAGAGAGAGAGGAGAAAGAGAGAGAGAGAGAGTGCAAATTA  400

seq1  GCTAAGACTGTGGGAGCAGGGAGCATGTAAACACATGGGAAAGTCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACTGTGGGAGCAGGGAGCATGTAAACACATGGGAAAGTCTATGA  450

seq1  GTGGAAACTAAGATTTCGACCAGGAGCAGGAGAGAGAAATAAGCAGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACTAAGATTTCGACCAGGAGCAGGAGAGAGAAATAAGCAGCTAC  500

seq1  TTCAGGGACTAGTTTCCTCCTCTACCCAGGGCTAGCTTCCTGTATTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGACTAGTTTCCTCCTCTACCCAGGGCTAGCTTCCTGTATTGGTG  550

seq1  TTTTCAGCTGTTACAAGAAAAAACTTAAGGCTGGATCTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCTGTTACAAGAAAAAACTTAAGGCTGGATCTTTTTTTTTTTTT  600

seq1  TAAGAGGTTTATTTAGCTCATAATTCTGGAGGTTCAGGAAAATATCACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTTTATTTAGCTCATAATTCTGGAGGTTCAGGAAAATATCACCT  650

seq1  TCTTCTTCATGCTCATCTCTGGTGACACCTTGAAGAAGGTG-TCATGGAA  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTTCTTCATGCTCATCTCTGGTGACACCTTGAAGAAGGTGTTCATGGAA  700

seq1  GAGGGTACAATATCGGGAAGCCAT-GGGGGAAGGACTTGCTCTTTGGATA  748
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGGGTACAATATCGGGAAGCCATGGGGGGAAGGACTTGCTCTTTGGATA  750

seq1  GGGTTTTGGCCTAGGTCAGTCTTGCCTAGAATTCACCACTACGTAACCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGGCCTAGGTCAGTCTTGCCTAGAATTCACCACTACGTAACCCA  800

seq1  TGTTAACCTCTAACCACTT-CAACCTACCAAGTGTTGGGGTTCACATGTG  847
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTAACCTCTAACCACTTCCAACCTACCAAGTGTTGGGGTTCACATGTG  850

seq1  -TGAGGCA-CCATGGCATGTTTATTA--TTCTAAG-ACAGGGTTTCA-CT  891
       ||| ||| |||||||||||||| ||  ||||||| | ||||||||| ||
seq2  TTGAAGCACCCATGGCATGTTTAATAATTTCTAAGAAAAGGGTTTCACCT  900

seq1  GTG-TAGCATA-GGCTGGCC-TCAAACT-AATAAT--CCTCCTG---CCC  932
      ||| ||||||| |||||||| ||||||| ||||||  |||||||   || 
seq2  GTGTTAGCATAGGGCTGGCCTTCAAACTAAATAATTCCCTCCTGGCCCCA  950

seq1  AAAATGCT-GCAA-TTCCAGATGTATACCACAGTG--TGGACTC--TGCA  976
      |||||||| |||| |||||||||||||||||||||  || ||||  ||||
seq2  AAAATGCTGGCAATTTCCAGATGTATACCACAGTGGTTGAACTCTTTGCA  1000

seq1  CT-GGTC-TTGCTCTT--ATTCTAACAACTGT--GCTTGGTATGGTGGTT  1020
      || |||| ||||||||  ||||||||||||||   |||||||||||||||
seq2  CTGGGTCTTTGCTCTTTAATTCTAACAACTGTTGCCTTGGTATGGTGGTT  1050

seq1  C-ATCT-GCAGCAACAGC-TAC-TCAGAAGGC-TGAGC-TGGC-AAGGGC  1063
      | |||| ||||||||||| ||| |||||| || ||||| |||| || | |
seq2  CAATCTGGCAGCAACAGCTTACTTCAGAAAGCTTGAGCTTGGCAAATGTC  1100

seq1  AACAC-AGGGAG-ACCTC-ATCTCAAAAACTAAAGTAAACCAAAGCTTTA  1110
      ||| | |||||| ||||| ||||| || ||| ||||  | | ||||||  
seq2  AACCCAAGGGAGAACCTCTATCTC-AAGACT-AAGTTGAGCCAAGCTT--  1146

seq1  GTTACTTGTGCCTG-CCAGAGCTCACTGTGC-AAGGCCA  1147
      | |||||| ||||| | |  ||||||||||| |||||||
seq2  GATACTTG-GCCTGTCGAAGGCTCACTGTGCTAAGGCCA  1184