BAC Information

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BAC

Clone NameB6Ng01-215C11
Chromosome1 (Build37)
Map Location 165,713,874 - 165,914,644
singlet/doubletdoublet
Overlap geneKifap3, Scyl3, BC055324
Upstream geneFmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626
Downstream gene2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215C11.bB6Ng01-215C11.g
ACCGA032205GA032206
length1,194904
definitionB6Ng01-215C11.b B6Ng01-215C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,913,443 - 165,914,644)(165,713,874 - 165,714,461)
sequence
gaattcagtcacattttgagacattcacttgatccatttaaatataagag
aatgtcatttcatataacatttgattatcttgagttgttttctcctcttt
tgtagttattcattcattattggatatctgctctgttatctctggtatgg
accaagcatttcatgccaatacttggaagtttattattaagtaagtttgt
tatttttttttcatattgtactttctatatcccaattctaaaaagttaat
ggtttttagattacatttgaaaaattttatgtggttgtataaaatactca
tggctccgctgcgtggtaatccagatgttatacatgaagctccaaaccaa
gctgaactcctctatacaactcttcaaatcaaatcaaacaaacaacaaca
acaaaaagcccccctagagttgtagctagttagctagtgttactgaaata
atgaaccatgaaccagagtatgcctgaatcatgtgccactgctactgttg
ttagataattatcagtatcaaatatgatgtttctgagctcacaagttagt
aactatatctggagctgacagtaatctctttgttatatgcacttgagttg
ttcaaccctaattttacttatcaaatactttgaacttaaattgaagcctt
ataagggttaatatggagagtgcctatagcagctgctagatgctgagggg
tgagaagaaaggttcttggctataggaataagaagaagccactttgttaa
ttatgtgtaacgtatgaaaagtcagcgtaacccattcaagtttaataagt
attttccttgttccctcaagatgttaacttggcaaaaaggtgatacagta
tcacttaggagccataatgtgtgcacctgagtcctggaatcgctagctag
tttttggaccatttggttaatttttattaaccttagtgtgtcatcttaaa
ataggatatggtagcactgtcttgatgatgttgcactagatactgagttc
ctagtgtgaattgctaaatcctcacatgacctagtgagtgctgagtgaat
agccgcatggctccctcacccacaaacagcaattgtgtcataaaagctcc
acctctcgtctttctctgtggttcagaactgatacatttaaatgttacac
tggaactattcactcgtcttaaggctcccatctgtttaagcata
gaattcctacttataccatgttgtgttgaatcgagggtgctcgggcagct
aggagcacatgtgaaagtactgccttaagtagatagcattggatcttggt
ccgggacccgccgaacttaggaaattagtctgaacaggtgagagggtgcg
ccagagaacctgacagcctctggaacaggcggaagcacagaggggctgag
gcagcaccctgtgtgggccggggacagccggccaccttccggaccggagg
acaggtgcccgcccggctggggaggcgacctaagccacagcagcagcggt
cgccatcttggtccgggacctgccgaacttaggaaattagtctgaacagg
tgagagggtgcgccagagaacctgacagcctctggaacaggcggaagcac
agaggggctgaggcagcaccctgtgtgggccggggacagccggccacctt
ccggaccggaggacaggtgcccgcccggctggggaggcgacctaagccac
agcagcagcggtcgccatcttggtccgggacccgccgaacttaggaaatt
agtctgaacaggtgagagggtgcgccagagaacctgacagcttctggaac
aggcggaagcacagaggcgctgaggcagcaccctgtgtgggccggggaca
gccggccaccttccggaccagaggacaggtgcccgcccggctggggaggc
gacctaagccacagcagcagcggtcgccatcttggtcccgggactccaag
gaacttaggaatttagtctgcttaggtgagagtctgttaccacctgggaa
ctgccaaagcaacacagtgtctgagaaaggttcctgtttttgggcccttc
ttcttcggccaggagggaggtccaatacagatatctgcgccaccttccct
gtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165913443_165914644
seq2: B6Ng01-215C11.b_48_1241 (reverse)

seq1  TATGCTT-AACAG-TGGGAG-CTTAAGAGGCCGAGTGATACGGTCCAGTG  47
      ||||||| ||||| |||||| |||||||   |||||||   | |||||||
seq2  TATGCTTAAACAGATGGGAGCCTTAAGA---CGAGTGAATAGTTCCAGTG  47

seq1  TACATTTTAAATGTATCAG-TCTGAA-CACAGAGAAAGGACCGAGA-GTG  94
      ||   |||||||||||||| |||||| |||||||||||   ||||| |||
seq2  TAACATTTAAATGTATCAGTTCTGAACCACAGAGAAAG--ACGAGAGGTG  95

seq1  GAGGCTATATGACAACAATGCTGTTTTGGTGGGGTGAGGGAGCCATGCGG  144
      |||  | |||||||  | ||||||||  || |||||||||||||||||||
seq2  GAGCTTTTATGACACAATTGCTGTTT--GT-GGGTGAGGGAGCCATGCGG  142

seq1  CTAATTCACTCAGCACTCACTAGGTTCATGTGAGGATTTAGCAATTCACA  194
      || ||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  CT-ATTCACTCAGCACTCACTAGG-TCATGTGAGGATTTAGCAATTCAC-  189

seq1  ACTAGGAACTCAGTATCTAGTGCAACATCATCAAGACAGTGCTACCATTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTAGGAACTCAGTATCTAGTGCAACATCATCAAGACAGTGCTACCA-TA  238

seq1  TCCTATTTTAAGATGAACACACTAAGGTTAATAAAAATTAACCAAATGGT  294
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCTATTTTAAGATG-ACACACTAAGGTTAATAAAAATTAACCAAATGGT  287

seq1  CCAAAAACTAGCTAGCGATTTCCAGGACTCAGGTGCACACATTATGGCTC  344
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAAAAACTAGCTAGCGA-TTCCAGGACTCAGGTGCACACATTATGGCTC  336

seq1  CTAAGTGATACTGTATCACCTTTTTGCCAAGTTAACATCTTGAGGGAACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGATACTGTATCACCTTTTTGCCAAGTTAACATCTTGAGGGAACA  386

seq1  AGGAAAATACTTATTAAACTTGAATGGGTTACGCTGACTTTTCATACGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATACTTATTAAACTTGAATGGGTTACGCTGACTTTTCATACGTT  436

seq1  ACACATAATTAACAAAGTGGCTTCTTCTTATTCCTATAGCCAAGAACCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAATTAACAAAGTGGCTTCTTCTTATTCCTATAGCCAAGAACCTT  486

seq1  TCTTCTCACCCCTCAGCATCTAGCAGCTGCTATAGGCACTCTCCATATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCACCCCTCAGCATCTAGCAGCTGCTATAGGCACTCTCCATATTA  536

seq1  ACCCTTATAAGGCTTCAATTTAAGTTCAAAGTATTTGATAAGTAAAATTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTATAAGGCTTCAATTTAAGTTCAAAGTATTTGATAAGTAAAATTA  586

seq1  GGGTTGAACAACTCAAGTGCATATAACAAAGAGATTACTGTCAGCTCCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAACAACTCAAGTGCATATAACAAAGAGATTACTGTCAGCTCCAG  636

seq1  ATATAGTTACTAACTTGTGAGCTCAGAAACATCATATTTGATACTGATAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTACTAACTTGTGAGCTCAGAAACATCATATTTGATACTGATAA  686

seq1  TTATCTAACAACAGTAGCAGTGGCACATGATTCAGGCATACTCTGGTTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAACAACAGTAGCAGTGGCACATGATTCAGGCATACTCTGGTTCA  736

seq1  TGGTTCATTATTTCAGTAACACTAGCTAACTAGCTACAACTCTAGGGGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATTATTTCAGTAACACTAGCTAACTAGCTACAACTCTAGGGGGG  786

seq1  CTTTTTGTTGTTGTTGTTTGTTTGATTTGATTTGAAGAGTTGTATAGAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTGTTGTTGTTTGTTTGATTTGATTTGAAGAGTTGTATAGAGG  836

seq1  AGTTCAGCTTGGTTTGGAGCTTCATGTATAACATCTGGATTACCACGCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCTTGGTTTGGAGCTTCATGTATAACATCTGGATTACCACGCAG  886

seq1  CGGAGCCATGAGTATTTTATACAACCACATAAAATTTTTCAAATGTAATC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCCATGAGTATTTTATACAACCACATAAAATTTTTCAAATGTAATC  936

seq1  TAAAAACCATTAACTTTTTAGAATTGGGATATAGAAAGTACAATATGAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCATTAACTTTTTAGAATTGGGATATAGAAAGTACAATATGAAA  986

seq1  AAAAAATAACAAACTTACTTAATAATAAACTTCCAAGTATTGGCATGAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAACAAACTTACTTAATAATAAACTTCCAAGTATTGGCATGAAA  1036

seq1  TGCTTGGTCCATACCAGAGATAACAGAGCAGATATCCAATAATGAATGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTCCATACCAGAGATAACAGAGCAGATATCCAATAATGAATGAA  1086

seq1  TAACTACAAAAGAGGAGAAAACAACTCAAGATAATCAAATGTTATATGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAAAAGAGGAGAAAACAACTCAAGATAATCAAATGTTATATGAA  1136

seq1  ATGACATTCTCTTATATTTAAATGGATCAAGTGAATGTCTCAAAATGTGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTCTCTTATATTTAAATGGATCAAGTGAATGTCTCAAAATGTGA  1186

seq1  CTGAATTC  1202
      ||||||||
seq2  CTGAATTC  1194

seq1: chr1_165713874_165714461
seq2: B6Ng01-215C11.g_66_653

seq1  GAATTCCTACTTATACCATGTTGTGTTGAATCGAGGGTGCTCGGGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTTATACCATGTTGTGTTGAATCGAGGGTGCTCGGGCAGCT  50

seq1  AGGAGCACATGTGAAAGTACTGCCTTAAGTAGATAGCATTGGATCTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACATGTGAAAGTACTGCCTTAAGTAGATAGCATTGGATCTTGGT  100

seq1  CCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCG  150

seq1  CCAGAGAACCTGACAGCCTCTGGAACAGGCGGAAGCACAGAGGGGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACCTGACAGCCTCTGGAACAGGCGGAAGCACAGAGGGGCTGAG  200

seq1  GCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGG  250

seq1  ACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCACAGCAGCAGCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCACAGCAGCAGCGGT  300

seq1  CGCCATCTTGGTCCGGGACCTGCCGAACTTAGGAAATTAGTCTGAACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATCTTGGTCCGGGACCTGCCGAACTTAGGAAATTAGTCTGAACAGG  350

seq1  TGAGAGGGTGCGCCAGAGAACCTGACAGCCTCTGGAACAGGCGGAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGTGCGCCAGAGAACCTGACAGCCTCTGGAACAGGCGGAAGCAC  400

seq1  AGAGGGGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTT  450

seq1  CCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCAC  500

seq1  AGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATT  550

seq1  AGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGAC  588
      ||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGAC  588