BAC Information

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BAC

Clone NameB6Ng01-215C15
Chromosome1 (Build37)
Map Location 78,292,922 - 78,294,063
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210
Downstream geneSgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215C15.bB6Ng01-215C15.g
ACCGA032213GA032214
length1,1521,164
definitionB6Ng01-215C15.b B6Ng01-215C15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactcaccacagtgtcctctgaggtcattcgtgctgttgcaaatg
acaggatttctctctttttaacagcggaagtgtattccagctttctggat
gccagtaaaactcagagagcctcttagtccagcaggaagtataaaacact
atccacagaagcgctgagttccagggtctttcaggaactcaggattgtgc
agcctactataactctataaggattggagtagcaaagattcagaagtttc
cataagtaaccaaaagaggacttagtactggaaaggtggctcagctcttg
caaaggaccaagattgaggactgcctactgtgtccccaagggatctgact
gcttcttctgacccctgtagactcactaggcataaaggacaacagaagac
ttggagcaagagctagggtaagctttgaagcccaacatctgtgaggaagg
tgggaagtggcactgatttgagccttagagtttcatttccaaatttctgc
cactttctggatgactgacgtaggcctgctcaggtcacaaagaacataaa
cttggattttggtttacatgaacttagaggtagctcaggagatccagggg
aaggaagaacctcatggtgactggaaccggatgcctggaagccttcccac
aggggtagcttgctggcctttctgccacccttgtgttcctgtctcacttc
tcccttgctagcacatggtagtcacctgactgacagcatggcctctggtg
cttggataatcttctggttactacttcagtagatactgactggggtctgt
gaatccaaattctctgagagagagtgcttatggtgtccactttgatcaag
tgtgcagtagagtggcaatcagcttgagccggggatccatgctgaaccct
gatgggtcagggtcccctctgagtgcctttcccctcctacggggaaacag
taccttattggactgccttgaaaggataaaccatgacgaaataaattgtg
gtatgaacatgttgatgccagatttggtgacaccaaaccttttatcccag
tacttggcaagaagaggcagaagatcgctaggagtttgagaaccaggcca
gaacttataagtgcaagttccaaggaacagccaaggttgtaaacaaagaa
ac
gaattctcctcgaggcatggaagaacatccaagatggggccggatggccg
gtccagacctcggtcgagatagacgaaggatttcctctgactcgtcccca
gtgggattataacatggcacagggtagggaacggctgtccaattatcgtc
gggcactagttgcgggtctcagaggggccgctcgtaggcccacaaatttg
cctaaggtaagagaagttatgcaggggccagctgagccccccccctcagt
ttttttagagagactcatggaagcttataggaggtatagcccgtttgacc
ctacgtcagagggacagtgggcttcagtgattatggcctacataggacag
tcagcttctgatattagaaggaagctgcatcgttttgaaggattgcaaga
ttatactataaggaatgtggttagagaggctgagaaagtgtatgacaaga
gagaaacagaggaggaaaagttagaaagagaaaagaaagagagaagagaa
gatgaagataagagagagaggaggcaggagagggctctgactcgaattct
ggccacagtggtagatagagaaaggggtaggactagacagacagggaatc
tgagagatgaaaaacagcaggggccaaggagacccagaagagacagacca
cacctagaaaaagaccagtgtgtatactgcaaggagaaaggccactgggc
cagtgagtgtcctaaaaagaagcaagggacacagtattatctcttggaga
aggtgaagactaggggagatggggctcggccctccctccctgagcctaag
ggtaacccttaataagtggaggggacccctataaaatttttctagttgat
acaggcacaagaattttcagtgcttcagtatctccattaggtcaaattta
gaaaaaattgagagaatctttagtaatctggggccacatgacaatagtca
tatccattggatctacgatctaggacagttgacctaggacagtatccagg
tggactcacctatttcctggtcattctagattgctctattgcccctctag
gaagaaacttattactgaattgaaggtgcaataactctttgccccctcgc
cctgggccgatagatttctggggaaatgaaaagctctctactttttgcct
ctatctctgtccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78292922_78294063
seq2: B6Ng01-215C15.b_47_1198

seq1  GAATTCACTCACCACAGTGTCCTCTGAGGTCATTCGTGCTGTTGCAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCACCACAGTGTCCTCTGAGGTCATTCGTGCTGTTGCAAATG  50

seq1  ACAGGATTTCTCTCTTTTTAACAGCGGAAGTGTATTCCAGCTTTCTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTTCTCTCTTTTTAACAGCGGAAGTGTATTCCAGCTTTCTGGAT  100

seq1  GCCAGTAAAACTCAGAGAGCCTCTTAGTCCAGCAGGAAGTATAAAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAAACTCAGAGAGCCTCTTAGTCCAGCAGGAAGTATAAAACACT  150

seq1  ATCCACAGAAGCGCTGAGTTCCAGGGTCTTTCAGGAACTCAGGATTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGAAGCGCTGAGTTCCAGGGTCTTTCAGGAACTCAGGATTGTGC  200

seq1  AGCCTACTATAACTCTATAAGGATTGGAGTAGCAAAGATTCAGAAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACTATAACTCTATAAGGATTGGAGTAGCAAAGATTCAGAAGTTTC  250

seq1  CATAAGTAACCAAAAGAGGACTTAGTACTGGAAAGGTGGCTCAGCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTAACCAAAAGAGGACTTAGTACTGGAAAGGTGGCTCAGCTCTTG  300

seq1  CAAAGGACCAAGATTGAGGACTGCCTACTGTGTCCCCAAGGGATCTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACCAAGATTGAGGACTGCCTACTGTGTCCCCAAGGGATCTGACT  350

seq1  GCTTCTTCTGACCCCTGTAGACTCACTAGGCATAAAGGACAACAGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCTGACCCCTGTAGACTCACTAGGCATAAAGGACAACAGAAGAC  400

seq1  TTGGAGCAAGAGCTAGGGTAAGCTTTGAAGCCCAACATCTGTGAGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCAAGAGCTAGGGTAAGCTTTGAAGCCCAACATCTGTGAGGAAGG  450

seq1  TGGGAAGTGGCACTGATTTGAGCCTTAGAGTTTCATTTCCAAATTTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTGGCACTGATTTGAGCCTTAGAGTTTCATTTCCAAATTTCTGC  500

seq1  CACTTTCTGGATGACTGACGTAGGCCTGCTCAGGTCACAAAGAACATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTGGATGACTGACGTAGGCCTGCTCAGGTCACAAAGAACATAAA  550

seq1  CTTGGATTTTGGTTTACATGAACTTAGAGGTAGCTCAGGAGATCCAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTTTGGTTTACATGAACTTAGAGGTAGCTCAGGAGATCCAGGGG  600

seq1  AAGGAAGAACCTCATGGTGACTGGAACCGGATGCCTGGAAGCCTTCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAACCTCATGGTGACTGGAACCGGATGCCTGGAAGCCTTCCCAC  650

seq1  AGGGGTAGCTTGCTGGCCTTTCTGCCACCCTTGTGTTCCTGTCTCACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAGCTTGCTGGCCTTTCTGCCACCCTTGTGTTCCTGTCTCACTTC  700

seq1  TCCCTTGCTAGCACATGGTAGTCACCTGACTGACAGCATGGCCTCTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCTAGCACATGGTAGTCACCTGACTGACAGCATGGCCTCTGGTG  750

seq1  CTTGGATAATCTTCTGGTTACTACTTCAGTAGATACTGACTGGGGTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATAATCTTCTGGTTACTACTTCAGTAGATACTGACTGGGGTCTGT  800

seq1  GAATCCAAATTCTCTGAGAGAGAGTGCTTATGGTGTCCACTTTGATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAATTCTCTGAGAGAGAGTGCTTATGGTGTCCACTTTGATCAAG  850

seq1  TGTGCAGTAGAGTGGCAATCAGCTTGAGCCGGGGATCCATGCTGAACCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTAGAGTGGCAATCAGCTTGAGCCGGGGATCCATGCTGAACCCT  900

seq1  GAT-GGTCAGGGTCCCCTCTGAGTGCCTTT-CCCTCCTACGGGGAAACAG  948
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATGGGTCAGGGTCCCCTCTGAGTGCCTTTCCCCTCCTACGGGGAAACAG  950

seq1  TACCTTATTGGACTG-CTTG-AAGGATAAACCATGACGAAATAAATTGTG  996
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  TACCTTATTGGACTGCCTTGAAAGGATAAACCATGACGAAATAAATTGTG  1000

seq1  GTATGAACATGTTGATGCCAGATTTGGTGACA-CAAACCTTTAATCCCAG  1045
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  GTATGAACATGTTGATGCCAGATTTGGTGACACCAAACCTTTTATCCCAG  1050

seq1  TACTTGGGAAGAAGAGGCAGGAGATCGCTAGGAGTTTGAG-ACCAGGCAA  1094
      ||||||| |||||||||||| ||||||||||||||||||| ||||||| |
seq2  TACTTGGCAAGAAGAGGCAGAAGATCGCTAGGAGTTTGAGAACCAGGCCA  1100

seq1  GA--CTAT-AGTGCAAGTTCCA--GGACAGCCAGGGTTGTTAAACAAAGA  1139
      ||   ||| |||||||||||||  | ||||||| ||||| ||||||||||
seq2  GAACTTATAAGTGCAAGTTCCAAGGAACAGCCAAGGTTG-TAAACAAAGA  1149

seq1  AAC  1142
      |||
seq2  AAC  1152