BAC Information

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BAC

Clone NameB6Ng01-216B12
Chromosome1 (Build37)
Map Location 61,826,737 - 61,955,046
singlet/doubletdoublet
Overlap genePard3b
Upstream geneCd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216B12.bB6Ng01-216B12.g
ACCGA032871GA032872
length7831,133
definitionB6Ng01-216B12.b B6Ng01-216B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,826,737 - 61,827,519)(61,953,913 - 61,955,046)
sequence
gaattcatctcaggcaaaacacttacaagtctgtcctgctggagccaagc
tgcacacagaatgttggataacttgttaagaataaattgtgaaacacttt
tgagcacaaggtgcaggtctaatttttcctttcttttctttaactttaaa
aatattctaaaattattacttattaaatgtcaaaatgctttaaatgtaga
acagtataagaatgagattactcagctcatctaatgaaacccagccaaag
taattattacccgaagatgggtatatgcatcccttttatgtgcataatta
agaaagcacatatataatgaaattaatccaatttttgaattaacataatt
ttgtcattgtttatattcagattttatcacacactatttgtttgttggtt
tgtttagggtgtatgtgtgtctgtgtgtgccacatcatgccggtggatat
cggaagacatcttgtgggagggaattgattctctccctctaccatgtagg
tcctggagactgaatcagtcatcaggcttggtgatcagcagtctgcctgc
tgcgccatcttgatggcgtgtctattgtttgaaagatgatttcagatatg
gacattgcatttcatgcccgtttacacttttagcatcctttctttgcttt
ctgtttgaagaatctgctgtgattcagaccaataaatactctactaattg
taatattaaaatgatatatttttcagacaaaagttgaagacttaatcata
tttttgagtaggatattggagtggtgggtaagg
gaattcatttagaatatgagaagttggtggctgtatacacagaagcactc
tgatgaccacagtcattaagacaaatccaagtttgcaatgactccacaac
caaccattctctcaggcgagtaggaacttctggcgaatgccctgctactg
aagctgagtctctatgggattcgcatgcatccctgcttagtgcaatatca
tgacatttgggaacagagaagcaaggaagccatggtcagcttttgacacc
acatctactttgatttgtgtcacaagacccaactcaaggagacccctcca
tttccagtagaaagaaagactatttctgaagaagcagggacaaatgggtg
gtttagaacaaactagacttgctacataaatccctcagcctgggtcatca
gctttgcattacaatgtttgtctaatatttctctacaaatataccataca
gtccttgatccatctcagcaaagaaaaacagttaacttttcatgtttctt
tgaggctttgtatacttctaaaggatcaagtatattttaatgatacttac
atgcttctagcttgttgatggatctttttgttttataacatccatgaact
tagtgatgagtaaagaaagacttttcccctacattttcttcatacagtat
gactgcataaaataccagtagctaacaagaacataatagtcttcattctc
aagaaaaggaggggggcctttcatgaaatgaatggtatttacttatgaac
tggtagaggttgccaagaatcctgacaatggaattaagtgaaggaactta
gaaaagaaatgttggaagttcactgtgcaaaaaatgggtattatttgaaa
actcttttagcagttactagtaatggatggaacggtctttctttagattt
aaagggagaaaccgctgaaataaaagcacctgattgtacaccatagatat
gttgctgtgtttcttatttgactagatctgagatgttaggtgtcattttt
caggatatatttctcttttaaaaatttatcccttttggaatgtataacaa
atgtggttgcacaagagccactgagtactgtgtcagaatgccctattact
ctaaagctgcttgaatgtctgtttatgcatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61826737_61827519
seq2: B6Ng01-216B12.b_45_827

seq1  GAATTCATCTCAGGCAAAACACTTACAAGTCTGTCCTGCTGGAGCCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAGGCAAAACACTTACAAGTCTGTCCTGCTGGAGCCAAGC  50

seq1  TGCACACAGAATGTTGGATAACTTGTTAAGAATAAATTGTGAAACACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAGAATGTTGGATAACTTGTTAAGAATAAATTGTGAAACACTTT  100

seq1  TGAGCACAAGGTGCAGGTCTAATTTTTCCTTTCTTTTCTTTAACTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAAGGTGCAGGTCTAATTTTTCCTTTCTTTTCTTTAACTTTAAA  150

seq1  AATATTCTAAAATTATTACTTATTAAATGTCAAAATGCTTTAAATGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTAAAATTATTACTTATTAAATGTCAAAATGCTTTAAATGTAGA  200

seq1  ACAGTATAAGAATGAGATTACTCAGCTCATCTAATGAAACCCAGCCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATAAGAATGAGATTACTCAGCTCATCTAATGAAACCCAGCCAAAG  250

seq1  TAATTATTACCCGAAGATGGGTATATGCATCCCTTTTATGTGCATAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTACCCGAAGATGGGTATATGCATCCCTTTTATGTGCATAATTA  300

seq1  AGAAAGCACATATATAATGAAATTAATCCAATTTTTGAATTAACATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCACATATATAATGAAATTAATCCAATTTTTGAATTAACATAATT  350

seq1  TTGTCATTGTTTATATTCAGATTTTATCACACACTATTTGTTTGTTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGTTTATATTCAGATTTTATCACACACTATTTGTTTGTTGGTT  400

seq1  TGTTTAGGGTGTATGTGTGTCTGTGTGTGCCACATCATGCCGGTGGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGGTGTATGTGTGTCTGTGTGTGCCACATCATGCCGGTGGATAT  450

seq1  CGGAAGACATCTTGTGGGAGGGAATTGATTCTCTCCCTCTACCATGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGACATCTTGTGGGAGGGAATTGATTCTCTCCCTCTACCATGTAGG  500

seq1  TCCTGGAGACTGAATCAGTCATCAGGCTTGGTGATCAGCAGTCTGCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGACTGAATCAGTCATCAGGCTTGGTGATCAGCAGTCTGCCTGC  550

seq1  TGCGCCATCTTGATGGCGTGTCTATTGTTTGAAAGATGATTTCAGATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCATCTTGATGGCGTGTCTATTGTTTGAAAGATGATTTCAGATATG  600

seq1  GACATTGCATTTCATGCCCGTTTACACTTTTAGCATCCTTTCTTTGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGCATTTCATGCCCGTTTACACTTTTAGCATCCTTTCTTTGCTTT  650

seq1  CTGTTTGAAGAATCTGCTGTGATTCAGACCAATAAATACTCTACTAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAAGAATCTGCTGTGATTCAGACCAATAAATACTCTACTAATTG  700

seq1  TAATATTAAAATGATATATTTTTCAGACAAAAGTTGAAGACTTAATCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAAAATGATATATTTTTCAGACAAAAGTTGAAGACTTAATCATA  750

seq1  TTTTTGAGTAGGATATTGGAGTGGTGGGTAAGG  783
      |||||||||||||||||||||||||||||||||
seq2  TTTTTGAGTAGGATATTGGAGTGGTGGGTAAGG  783

seq1: chr1_61953913_61955046
seq2: B6Ng01-216B12.g_65_1197 (reverse)

seq1  TAGATGCAT-AACAGACA-TCCAGCAGCTTTAAGAGTAATA-GGCATCTT  47
      ||||||||| |||||||| || ||||||||| ||||||||| ||||  ||
seq2  TAGATGCATAAACAGACATTCAAGCAGCTTT-AGAGTAATAGGGCA--TT  47

seq1  GGGCCACAGTACTCAGTTGCTCTTGTGCAAACCACATTTTGTAATTACAT  97
        | ||||||||||||| |||||||||| ||||||||||  ||  |||||
seq2  CTGACACAGTACTCAGTGGCTCTTGTGC-AACCACATTTGTTA--TACAT  94

seq1  TCAAAAGGGGATAAATTTTAAAAAGAGAAATATTATTCTGAAAAATGACA  147
      || ||| |||||||||||| |||||||||||| ||| |||||||||||| 
seq2  TCCAAAAGGGATAAATTTTTAAAAGAGAAATA-TATCCTGAAAAATGAC-  142

seq1  ACCTAACATCTCAGATCTAGTCAAAT-AGAAACACAGCAACATATCTATG  196
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCTAACATCTCAGATCTAGTCAAATAAGAAACACAGCAACATATCTATG  192

seq1  GTGTTACAATCAGGTGC-TTTATTTCAGCGGTTTCTCCTTTTAAATCT-A  244
      ||| ||||||||||||| |||||||||||||||||||| ||||||||| |
seq2  GTG-TACAATCAGGTGCTTTTATTTCAGCGGTTTCTCCCTTTAAATCTAA  241

seq1  AGAAAGACCGTTCCATCCATTACTAGTAACTGCT-AAAGAGTTTTC-AAT  292
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  AGAAAGACCGTTCCATCCATTACTAGTAACTGCTAAAAGAGTTTTCAAAT  291

seq1  AATACCCATTTTTTGCACAGTGAACTTCCAACATTTCTTTTCTAAGTTCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCATTTTTTGCACAGTGAACTTCCAACATTTCTTTTCTAAGTTCC  341

seq1  TTCACTTAATTCCATTGTCAGGATTCTTGGCAACCTCTACCAGTTCATAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTAATTCCATTGTCAGGATTCTTGGCAACCTCTACCAGTTCATAA  391

seq1  GTAAATACCATTCATTTCATGAAAGGCCCCCCTCCTTTTCTTGAGAATGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACCATTCATTTCATGAAAGGCCCCCCTCCTTTTCTTGAGAATGA  441

seq1  AGACTATTATGTTCTTGTTAGCTACTGGTATTTTATGCAGTCATACTGTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTATGTTCTTGTTAGCTACTGGTATTTTATGCAGTCATACTGTA  491

seq1  TGAAGAAAATGTAGGGGAAAAGTCTTTCTTTACTCATCACTAAGTTCATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAATGTAGGGGAAAAGTCTTTCTTTACTCATCACTAAGTTCATG  541

seq1  GATGTTATAAAACAAAAAGATCCATCAACAAGCTAGAAGCATGTAAGTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATAAAACAAAAAGATCCATCAACAAGCTAGAAGCATGTAAGTAT  591

seq1  CATTAAAATATACTTGATCCTTTAGAAGTATACAAAGCCTCAAAGAAACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATATACTTGATCCTTTAGAAGTATACAAAGCCTCAAAGAAACA  641

seq1  TGAAAAGTTAACTGTTTTTCTTTGCTGAGATGGATCAAGGACTGTATGGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTAACTGTTTTTCTTTGCTGAGATGGATCAAGGACTGTATGGT  691

seq1  ATATTTGTAGAGAAATATTAGACAAACATTGTAATGCAAAGCTGATGACC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAGAGAAATATTAGACAAACATTGTAATGCAAAGCTGATGACC  741

seq1  CAGGCTGAGGGATTTATGTAGCAAGTCTAGTTTGTTCTAAACCACCCATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAGGGATTTATGTAGCAAGTCTAGTTTGTTCTAAACCACCCATT  791

seq1  TGTCCCTGCTTCTTCAGAAATAGTCTTTCTTTCTACTGGAAATGGAGGGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGCTTCTTCAGAAATAGTCTTTCTTTCTACTGGAAATGGAGGGG  841

seq1  TCTCCTTGAGTTGGGTCTTGTGACACAAATCAAAGTAGATGTGGTGTCAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGAGTTGGGTCTTGTGACACAAATCAAAGTAGATGTGGTGTCAA  891

seq1  AAGCTGACCATGGCTTCCTTGCTTCTCTGTTCCCAAATGTCATGATATTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACCATGGCTTCCTTGCTTCTCTGTTCCCAAATGTCATGATATTG  941

seq1  CACTAAGCAGGGATGCATGCGAATCCCATAGAGACTCAGCTTCAGTAGCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGCAGGGATGCATGCGAATCCCATAGAGACTCAGCTTCAGTAGCA  991

seq1  GGGCATTCGCCAGAAGTTCCTACTCGCCTGAGAGAATGGTTGGTTGTGGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTCGCCAGAAGTTCCTACTCGCCTGAGAGAATGGTTGGTTGTGGA  1041

seq1  GTCATTGCAAACTTGGATTTGTCTTAATGACTGTGGTCATCAGAGTGCTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGCAAACTTGGATTTGTCTTAATGACTGTGGTCATCAGAGTGCTT  1091

seq1  CTGTGTATACAGCCACCAACTTCTCATATTCTAAATGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATACAGCCACCAACTTCTCATATTCTAAATGAATTC  1133