BAC Information

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BAC

Clone NameB6Ng01-216D13
Chromosome1 (Build37)
Map Location 173,875,722 - 174,042,994
singlet/doubletdoublet
Overlap geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa
Upstream geneFcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
Downstream genePex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216D13.bB6Ng01-216D13.g
ACCGA032967GA032968
length1,1271,067
definitionB6Ng01-216D13.b B6Ng01-216D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,041,858 - 174,042,994)(173,875,722 - 173,876,780)
sequence
gaattcacaagatgaggagtcacaccatagtgttctcactcaccctccaa
agttcactagtacagtacaatcacctatctactgtgtactccacagagcc
agtgctctcctagcctagtgccttagcttagaagctccacagtagcttta
ggtactttagggcagaggaaataataaaagaaggaatgaaatacaggact
ggaaaagcagctttcataagctcctttatccttgaaacaatgtctgggcc
tcaacatttcataagtacttcatccagcaaaaccaagtgtcaaggaaaat
gagcagattcttcaaatttcttgctatctagcttctatcctagaaactct
taaattcagtatgaatggtaacaagagcggaactactgtgcagaagagga
gacaggaagatgtgaaacagaaatagcaacagaaaaatagctcaatttaa
gtaaaaacatccaaaactctactctggctagaatgtaagcaaggatagcg
cttctgggtccagcctctggcacattaggttacgctggtcccgagccttc
ctttctctacagctatctgggactgacgacacagtcctctcacctcaatg
tttccacactccagggccaggctgaaacgagttttctcatcctttacaaa
atgcagcgccacttcaggatagcccttcttctggagataagcgatgattg
actggcctaccagcttagcgttcctcaccatgtggagtacctagacattc
ggtgtgataggcagaaaacagatcactcatgaggaaaaagcagcactgcc
tccttcaacacctcgttaggtcgctttgcttcctacctcatcatactttc
tgttgatcagggccagtttgaacttgaactcagtgggatcaatggttagc
acccgaggacgacactctctgtctaagcagtatacattattgccctttca
ctctggtgacatagatgggtaaatccagagttcggattaatcccatggtc
cctaggagcaaggggacaaaaggcacattttcagtggagaaaatcacctt
gtaaaccgacagagttaagacagccttcctgttatcctttcatcaatgct
actaaacctggtatcaaacagagtgtt
gaattcctataaggccttacaaggtgccctaaagcttagaggaagactca
ttggacagataggaaggtaccctcctttatttttgacatttatgtgtgtg
catgtgtacttatgggacacgtggagtcagaggatctcttagagtttcta
tttctgtgacaaaacaacatgaccaaaaagcaagttggggagaaaagggt
ttatttggcttacactttcatatcattgttcatgactgaagggagtcagg
acaggaactcaaaggggcaggaaccttgaagcaggagctgttgtagaggt
cgggccatggaggggtgctgcttactggcttgttctttatggcctgctca
gcctgctttctaatagaacccaggaccaccagcccagggatgcacaaccc
acaatagtcctaccctgttgtggatttggtttattgcttatattatgtta
attgggtccccaaattatacggaaatttgccatctgcatgtaagacaccc
agggtccctgcccccagttggttctaatagttaaataaaggtgccagtgg
tcaatggttgggcagggagacagaggtgggactttagatttcctgggcaa
gggaacccagggaagaaaaaggatttagaatcgccatgctgatcaagctt
gagagctgcgggagaggaagcatacagccatggaagagtgagagctgtgg
gacaggaagcatacagccatggaagagttggggaagagcagccccagcgg
tgcctcccccactgggtctggggtaacaaagatggagtatagattttagt
aagtaatcattcatgagtatcagaggggaggagttagtaacatgaaaatt
agggagtgggcccaaccactgattttacgtagagcatattaaaaataggc
tgtgtgtggtttgtctttcaataaaaaatccagagccatccttgtcaggt
ggccaagcattgagcaccaatttgagtagtggttcacaattatacagcag
atgggtgtcccacctgtaggctccgcacctcactaaaaaacctattggag
attcctcaaaggaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174041858_174042994
seq2: B6Ng01-216D13.b_46_1172 (reverse)

seq1  AACACTTCCTGTTTG-TACCAGTGTTTAGGTAGCATTTGATGAAAGGATA  49
      ||||||  ||||||| |||||| ||||| |||||| ||||||||||||||
seq2  AACACT--CTGTTTGATACCAG-GTTTA-GTAGCA-TTGATGAAAGGATA  45

seq1  ACAAGGAAAGGCTGTCTTAACTCTGTTCCGTTTTTACAAGGTGGATTTTC  99
      |||  | |||||||||||||||||||  ||  |||||||||| |||||||
seq2  ACA--GGAAGGCTGTCTTAACTCTGT--CG-GTTTACAAGGT-GATTTTC  89

seq1  TCCCTTCTGAAAATTGTGCCTTTTGTCCCC-TGCTCCTAGGGACCATGGG  148
      |||   ||||||| |||||||||||||||| |||||||||||||||||||
seq2  TCC--ACTGAAAA-TGTGCCTTTTGTCCCCTTGCTCCTAGGGACCATGGG  136

seq1  ATT-ATCCGAACTCTGGATTTACCCATCTATGTCACCAGAGTG-AAGGGC  196
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTAATCCGAACTCTGGATTTACCCATCTATGTCACCAGAGTGAAAGGGC  186

seq1  AATAATGTATACTGCCTAGACAGAGAGTGTCGTCCTCGGGTGCTAACCAT  246
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATAATGTATACTGCTTAGACAGAGAGTGTCGTCCTCGGGTGCTAACCAT  236

seq1  TGATCCCACTGAGTTCAAGTTCAAACTGGCCCTGATCAACAGAAAGTATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCACTGAGTTCAAGTTCAAACTGGCCCTGATCAACAGAAAGTATG  286

seq1  ATGAGGTAGGAAGCAAAGCGACCTAACGAGGTGTTGAAGGAGGCAGTGCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAGGAAGCAAAGCGACCTAACGAGGTGTTGAAGGAGGCAGTGCT  336

seq1  GCTTTTTCCTCATGAGTGATCTGTTTTCTGCCTATCACACCGAATGTCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCCTCATGAGTGATCTGTTTTCTGCCTATCACACCGAATGTCTA  386

seq1  GGTACTCCACATGGTGAGGAACGCTAAGCTGGTAGGCCAGTCAATCATCG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCCACATGGTGAGGAACGCTAAGCTGGTAGGCCAGTCAATCATCG  436

seq1  CTTATCTCCAGAAGAAGGGCTATCCTGAAGTGGCGCTGCATTTTGTAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCCAGAAGAAGGGCTATCCTGAAGTGGCGCTGCATTTTGTAAAG  486

seq1  GATGAGAAAACTCGTTTCAGCCTGGCCCTGGAGTGTGGAAACATTGAGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAAACTCGTTTCAGCCTGGCCCTGGAGTGTGGAAACATTGAGGT  536

seq1  GAGAGGACTGTGTCGTCAGTCCCAGATAGCTGTAGAGAAAGGAAGGCTCG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACTGTGTCGTCAGTCCCAGATAGCTGTAGAGAAAGGAAGGCTCG  586

seq1  GGACCAGCGTAACCTAATGTGCCAGAGGCTGGACCCAGAAGCGCTATCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCGTAACCTAATGTGCCAGAGGCTGGACCCAGAAGCGCTATCCT  636

seq1  TGCTTACATTCTAGCCAGAGTAGAGTTTTGGATGTTTTTACTTAAATTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACATTCTAGCCAGAGTAGAGTTTTGGATGTTTTTACTTAAATTGA  686

seq1  GCTATTTTTCTGTTGCTATTTCTGTTTCACATCTTCCTGTCTCCTCTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTTCTGTTGCTATTTCTGTTTCACATCTTCCTGTCTCCTCTTCT  736

seq1  GCACAGTAGTTCCGCTCTTGTTACCATTCATACTGAATTTAAGAGTTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAGTTCCGCTCTTGTTACCATTCATACTGAATTTAAGAGTTTCT  786

seq1  AGGATAGAAGCTAGATAGCAAGAAATTTGAAGAATCTGCTCATTTTCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAAGCTAGATAGCAAGAAATTTGAAGAATCTGCTCATTTTCCTT  836

seq1  GACACTTGGTTTTGCTGGATGAAGTACTTATGAAATGTTGAGGCCCAGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTGGTTTTGCTGGATGAAGTACTTATGAAATGTTGAGGCCCAGAC  886

seq1  ATTGTTTCAAGGATAAAGGAGCTTATGAAAGCTGCTTTTCCAGTCCTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCAAGGATAAAGGAGCTTATGAAAGCTGCTTTTCCAGTCCTGTA  936

seq1  TTTCATTCCTTCTTTTATTATTTCCTCTGCCCTAAAGTACCTAAAGCTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCCTTCTTTTATTATTTCCTCTGCCCTAAAGTACCTAAAGCTAC  986

seq1  TGTGGAGCTTCTAAGCTAAGGCACTAGGCTAGGAGAGCACTGGCTCTGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCTTCTAAGCTAAGGCACTAGGCTAGGAGAGCACTGGCTCTGTG  1036

seq1  GAGTACACAGTAGATAGGTGATTGTACTGTACTAGTGAACTTTGGAGGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACAGTAGATAGGTGATTGTACTGTACTAGTGAACTTTGGAGGGT  1086

seq1  GAGTGAGAACACTATGGTGTGACTCCTCATCTTGTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGAACACTATGGTGTGACTCCTCATCTTGTGAATTC  1127

seq1: chr1_173875722_173876780
seq2: B6Ng01-216D13.g_69_1135

seq1  GAATTCCTATAAGGCCTTACAAGGTGCCCTAAAGCTTAGAGGAAGACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAAGGCCTTACAAGGTGCCCTAAAGCTTAGAGGAAGACTCA  50

seq1  TTGGACAGATAGGAAGGTACCCTCCTTTATTTTTGACATTTATGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGATAGGAAGGTACCCTCCTTTATTTTTGACATTTATGTGTGTG  100

seq1  CATGTGTACTTATGGGACACGTGGAGTCAGAGGATCTCTTAGAGTTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTACTTATGGGACACGTGGAGTCAGAGGATCTCTTAGAGTTTCTA  150

seq1  TTTCTGTGACAAAACAACATGACCAAAAAGCAAGTTGGGGAGAAAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGACAAAACAACATGACCAAAAAGCAAGTTGGGGAGAAAAGGGT  200

seq1  TTATTTGGCTTACACTTTCATATCATTGTTCATGACTGAAGGGAGTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGCTTACACTTTCATATCATTGTTCATGACTGAAGGGAGTCAGG  250

seq1  ACAGGAACTCAAAGGGGCAGGAACCTTGAAGCAGGAGCTGTTGTAGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACTCAAAGGGGCAGGAACCTTGAAGCAGGAGCTGTTGTAGAGGT  300

seq1  CGGGCCATGGAGGGGTGCTGCTTACTGGCTTGTTCTTTATGGCCTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCATGGAGGGGTGCTGCTTACTGGCTTGTTCTTTATGGCCTGCTCA  350

seq1  GCCTGCTTTCTAATAGAACCCAGGACCACCAGCCCAGGGATGCACAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTTTCTAATAGAACCCAGGACCACCAGCCCAGGGATGCACAACCC  400

seq1  ACAATAGTCCTACCCTGTTGTGGATTTGGTTTATTGCTTATATTATGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTCCTACCCTGTTGTGGATTTGGTTTATTGCTTATATTATGTTA  450

seq1  ATTGGGTCCCCAAATTATACGGAAATTTGCCATCTGCATGTAAGACACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTCCCCAAATTATACGGAAATTTGCCATCTGCATGTAAGACACCC  500

seq1  AGGGTCCCTGCCCCCAGTTGGTTCTAATAGTTAAATAAAGGTGCCAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCTGCCCCCAGTTGGTTCTAATAGTTAAATAAAGGTGCCAGTGG  550

seq1  TCAATGGTTGGGCAGGGAGACAGAGGTGGGACTTTAGATTTCCTGGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGTTGGGCAGGGAGACAGAGGTGGGACTTTAGATTTCCTGGGCAA  600

seq1  GGGAACCCAGGGAAGAAAAAGGATTTAGAATCGCCATGCTGATCAAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCAGGGAAGAAAAAGGATTTAGAATCGCCATGCTGATCAAGCTT  650

seq1  GAGAGCTGCGGGAGAGGAAGCATACAGCCATGGAAGAGTGAGAGCTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGCGGGAGAGGAAGCATACAGCCATGGAAGAGTGAGAGCTGTGG  700

seq1  GACAGGAAGCATACAGCCATGGAAGAGTTGGGGAAGAGCAGCCCCAGCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAGCATACAGCCATGGAAGAGTTGGGGAAGAGCAGCCCCAGCGG  750

seq1  TGCCTCCCCCACTGGGTCTGGGGTAACAAAGATGGAGTATAGATTTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCCCACTGGGTCTGGGGTAACAAAGATGGAGTATAGATTTTAGT  800

seq1  AAGTAATCATTCATGAGTATCAGAGGGGAGGAGTTAGTAACATGAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCATTCATGAGTATCAGAGGGGAGGAGTTAGTAACATGAAAATT  850

seq1  AGGGAGT-GGCCCAACCACTGA-TTTACGTAGAGCATATTAAAAATAAGG  898
      ||||||| |||||||||||||| ||||||||||||||||||||||| |||
seq2  AGGGAGTGGGCCCAACCACTGATTTTACGTAGAGCATATTAAAAAT-AGG  899

seq1  CTGTGTGT-GTTTGTCTTTCATTAAAAAATCCAGAG-CAT-CTTGTCAGG  945
      |||||||| |||||||||||| |||||||||||||| ||| |||||||||
seq2  CTGTGTGTGGTTTGTCTTTCAATAAAAAATCCAGAGCCATCCTTGTCAGG  949

seq1  TGG-CAAGCATTGAGCACCAATTTGAGTAGT-GTTCACAATTAATACAGC  993
      ||| ||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TGGCCAAGCATTGAGCACCAATTTGAGTAGTGGTTCACAATT-ATACAGC  998

seq1  AGAT-GGTGTCCAACCTGTAGGCT-CGCA-CTCACTAAAAAAACTAATTG  1040
      |||| ||||||| ||||||||||| |||| |||||||||||| || ||||
seq2  AGATGGGTGTCCCACCTGTAGGCTCCGCACCTCACTAAAAAACCT-ATTG  1047

seq1  GAGA-TGCTCAAAGGGAGAA  1059
      |||| | |||||||| ||||
seq2  GAGATTCCTCAAAGGAAGAA  1067