BAC Information

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BAC

Clone NameB6Ng01-216J21
Chromosome1 (Build37)
Map Location 49,183,169 - 49,365,603
singlet/doubletdoublet
Overlap geneLOC666924, C230029F24Rik
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik
Downstream geneLOC627430, LOC100041981, EG666962, EG666970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216J21.bB6Ng01-216J21.g
ACCGA033262GA033263
length1,082658
definitionB6Ng01-216J21.b B6Ng01-216J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,364,511 - 49,365,603)(49,183,169 - 49,183,822)
sequence
gaattctccttaagactacactgcctagcaaaagcaatttatgcatagtt
gtaaagtagaaagattttgtgtggtttttaacacaaaggcttgcattgaa
tcagtcacctcaatatatcatggtctttgcttttttgtaaaaatcatcat
tgatatttttaaagaaaaaggtatcatggtttcataattttgctcattat
gaaacattaagtgtttgtaggcttttaaaatcatggcttatctaagagaa
tctgtcttttaatggttacaattgaattcctcctcttctgtatctgtttt
ctatttcagaaccatttagaaaaaaatctacttaaccagacattattcag
ttgattattgttatttgaggatggctaacctctaaaataggcttattctt
atcaatctatattgcacaaaacagtgttctagatgatactcattcccctt
gcagactacattaatggaaaaggttgactttagaccatggacaaacctaa
ggagtttatcatttgtctggcatccatacatcagagaactataaatgact
tatttctagaaatagaaaaggaaaaaccttaaagttaatggttgtgaatt
gaaattctttggataacatgggtttattaaaatctcttcaggaaatttag
ttaaaaaatttatcagacaaacaagaccaaggagaagagatggtacttcc
ctttattagatgttatagagttaagtttgcataaccctgaactgtcatct
tcctaagccaaacaaccatttgatgactggtgtgcacatcaagaatcaaa
tactctttcacttagtactaatctctgctgtgtcaacacataacaacttg
cctgcttcccctcttcattctcaaaatctggacctggatcagacttgatg
tttcctgattctgaattgttttggtgttttgttgtgtttccagatctggt
tgtcttagcacttacaaatgaattctgaatatcccgtatcaagctaaaca
gcttgctagtagctcaaacagaggtcttctgctcttgttctgggtagtgt
cactgttctcttttcctcaccaatttctgatg
gaattcactctccaaagaaacaaacagaaaaacaagaaaaatccaaaagt
cctgtatccagggaaagactggcagagaggaaaaagggtagacagggatt
ggaaagataaagagatggtacaaagaataatcagaatgcattgtttataa
gtatgagatttcaaagtataaacaaataagagtaaaataattaaatggaa
atagtcagctgtggggttgggggtggggaaattctagagtgttccagaga
cccagggtttgagaagttcccaaaattgagtgtggatgaccttatctgaa
atacccaaccatagggagatggaacctgaagagacaatctccagtaaata
gacagggcctcctttggaggacagggttaacaacctaccttcaaagtttt
tgatccagaattgttcctgactaaaagaaacacattaacaaaactggaac
agagattgaaagaaaaggccgtccagtgaccaggccaacttgggatctat
cccttggataggtcccaaacctaggacaaaattaatgatactttgttgtg
cttgcagacaggatcctaccatggttgtctctcagaaatcctcccaactc
cctaactgagacagatgcaaagagttccagtgaacccagtgaactgatgt
ggggaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49364511_49365603
seq2: B6Ng01-216J21.b_45_1126 (reverse)

seq1  CATCAGAAATGGGTTGAGAAAGAGA-AACAGTGACAACTAACCAG-ACAA  48
      |||||||||| || |||| || ||| ||||||||| |||| |||| ||||
seq2  CATCAGAAATTGG-TGAGGAAAAGAGAACAGTGAC-ACTACCCAGAACAA  48

seq1  GAGGCAGGAAAGACCTTCTGTTTGAGCTACTTAAGCAAAGCTGTTTAGCT  98
      || ||||  |||||| |||||||||||||||  ||| |||||||||||| 
seq2  GA-GCAG--AAGACC-TCTGTTTGAGCTACT--AGC-AAGCTGTTTAGC-  90

seq1  TTGATACGGGATATTCAGAATTCATTTGTAAGGTGCTAAGACAAACCAGA  148
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TTGATACGGGATATTCAGAATTCATTTGTAA-GTGCTAAGAC-AACCAGA  138

seq1  TCTGGAAACACAACAAAACACCCAAAACAATTCAGAATCAGGAAACATCA  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGGAAACACAACAAAACA-CCAAAACAATTCAGAATCAGGAAACATCA  187

seq1  AGTCTGATCCAGGTCCAGATTTTGAGAATGAAGAGGGGAAGCAGGCAAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATCCAGGTCCAGATTTTGAGAATGAAGAGGGGAAGCAGGCAAGT  237

seq1  TGTTATGTGTTGACACAGCAGAGATTAGTACTAAGTGAAAGAGTATTTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTGTTGACACAGCAGAGATTAGTACTAAGTGAAAGAGTATTTGA  287

seq1  TTCTTGATGTGCACACCAGTCATCAAATGGTTGTTTGGCTTAGGAAGATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATGTGCACACCAGTCATCAAATGGTTGTTTGGCTTAGGAAGATG  337

seq1  ACAGTTCAGGGTTATGCAAACTTAACTCTATAACATCTAATAAAGGGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAGGGTTATGCAAACTTAACTCTATAACATCTAATAAAGGGAAG  387

seq1  TACCATCTCTTCTCCTTGGTCTTGTTTGTCTGATAAATTTTTTAACTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTCTTCTCCTTGGTCTTGTTTGTCTGATAAATTTTTTAACTAAA  437

seq1  TTTCCTGAAGAGATTTTAATAAACCCATGTTATCCAAAGAATTTCAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAAGAGATTTTAATAAACCCATGTTATCCAAAGAATTTCAATTC  487

seq1  ACAACCATTAACTTTAAGGTTTTTCCTTTTCTATTTCTAGAAATAAGTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATTAACTTTAAGGTTTTTCCTTTTCTATTTCTAGAAATAAGTCA  537

seq1  TTTATAGTTCTCTGATGTATGGATGCCAGACAAATGATAAACTCCTTAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTTCTCTGATGTATGGATGCCAGACAAATGATAAACTCCTTAGG  587

seq1  TTTGTCCATGGTCTAAAGTCAACCTTTTCCATTAATGTAGTCTGCAAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCATGGTCTAAAGTCAACCTTTTCCATTAATGTAGTCTGCAAGGG  637

seq1  GAATGAGTATCATCTAGAACACTGTTTTGTGCAATATAGATTGATAAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTATCATCTAGAACACTGTTTTGTGCAATATAGATTGATAAGAA  687

seq1  TAAGCCTATTTTAGAGGTTAGCCATCCTCAAATAACAATAATCAACTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTATTTTAGAGGTTAGCCATCCTCAAATAACAATAATCAACTGAA  737

seq1  TAATGTCTGGTTAAGTAGATTTTTTTCTAAATGGTTCTGAAATAGAAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTGGTTAAGTAGATTTTTTTCTAAATGGTTCTGAAATAGAAAAC  787

seq1  AGATACAGAAGAGGAGGAATTCAATTGTAACCATTAAAAGACAGATTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGAAGAGGAGGAATTCAATTGTAACCATTAAAAGACAGATTCTC  837

seq1  TTAGATAAGCCATGATTTTAAAAGCCTACAAACACTTAATGTTTCATAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAGCCATGATTTTAAAAGCCTACAAACACTTAATGTTTCATAAT  887

seq1  GAGCAAAATTATGAAACCATGATACCTTTTTCTTTAAAAATATCAATGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAATTATGAAACCATGATACCTTTTTCTTTAAAAATATCAATGAT  937

seq1  GATTTTTACAAAAAAGCAAAGACCATGATATATTGAGGTGACTGATTCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTACAAAAAAGCAAAGACCATGATATATTGAGGTGACTGATTCAA  987

seq1  TGCAAGCCTTTGTGTTAAAAACCACACAAAATCTTTCTACTTTACAACTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCTTTGTGTTAAAAACCACACAAAATCTTTCTACTTTACAACTA  1037

seq1  TGCATAAATTGCTTTTGCTAGGCAGTGTAGTCTTAAGGAGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAATTGCTTTTGCTAGGCAGTGTAGTCTTAAGGAGAATTC  1082

seq1: chr1_49183169_49183822
seq2: B6Ng01-216J21.g_70_727

seq1  GAATTCACTCTCCAAAGAAACAAACAGAAAAACAAGAAAAATCCAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCCAAAGAAACAAACAGAAAAACAAGAAAAATCCAAAAGT  50

seq1  CCTGTATCCAGGGAAAGACTGGCAGAGAGGAAAAAGGGTAGACAGGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCCAGGGAAAGACTGGCAGAGAGGAAAAAGGGTAGACAGGGATT  100

seq1  GGAAAGATAAAGAGATGGTACAAAGAATAATCAGAATGCATTGTTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATAAAGAGATGGTACAAAGAATAATCAGAATGCATTGTTTATAA  150

seq1  GTATGAGATTTCAAAGTATAAACAAATAAGAGTAAAATAATTAAATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGATTTCAAAGTATAAACAAATAAGAGTAAAATAATTAAATGGAA  200

seq1  ATAGTCAGCTGTGGGGTTGGGGGTGGGGAAATTCTAGAGTGTTCCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGCTGTGGGGTTGGGGGTGGGGAAATTCTAGAGTGTTCCAGAGA  250

seq1  CCCAGGGTTTGAGAAGTTCCCAAAATTGAGTGTGGATGACCTTATCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTTTGAGAAGTTCCCAAAATTGAGTGTGGATGACCTTATCTGAA  300

seq1  ATACCCAACCATAGGGAGATGGAACCTGAAGAGACAATCTCCAGTAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAACCATAGGGAGATGGAACCTGAAGAGACAATCTCCAGTAAATA  350

seq1  GACAGGGCCTCCTTTGGAGGACAGGGTTAACAACCTACCTTCAAAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCCTCCTTTGGAGGACAGGGTTAACAACCTACCTTCAAAGTTTT  400

seq1  TGATCCAGAATTGTTCCTGACTAAAAGAAACACATTAACAAAACTGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAGAATTGTTCCTGACTAAAAGAAACACATTAACAAAACTGGAAC  450

seq1  AGAGATTG-AAGAAAAGGCCGTCCAGTGACCAGGCCAACTTGGGATCTAT  499
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGAAAGAAAAGGCCGTCCAGTGACCAGGCCAACTTGGGATCTAT  500

seq1  CCCTTGGATAGGTCCCAAACCT-GGACAAAATTAATGATACTTTGTTGTG  548
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTTGGATAGGTCCCAAACCTAGGACAAAATTAATGATACTTTGTTGTG  550

seq1  CTTGCAGACAGGAGCCTACCATGGTTGTCTCTCAGAAATCCTCCCAAC-C  597
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  CTTGCAGACAGGATCCTACCATGGTTGTCTCTCAGAAATCCTCCCAACTC  600

seq1  CCTAACTGAGACAGATGCAAAGAGTTCCAGTGAA-CCAGTGGACTGAGGT  646
      |||||||||||||||||||||||||||||||||| |||||| ||||| ||
seq2  CCTAACTGAGACAGATGCAAAGAGTTCCAGTGAACCCAGTGAACTGATGT  650

seq1  GGGGAACC  654
      ||||||||
seq2  GGGGAACC  658