BAC Information

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BAC

Clone NameB6Ng01-216K05
Chromosome1 (Build37)
Map Location 82,952,814 - 83,092,674
singlet/doubletdoublet
Overlap geneLOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225
Downstream geneCcl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216K05.bB6Ng01-216K05.g
ACCGA033278GA033279
length7761,009
definitionB6Ng01-216K05.b B6Ng01-216K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,091,899 - 83,092,674)(82,952,814 - 82,953,820)
sequence
gaattcttctccgtgatcactttcccaaacaccgctaaaagtacagaagt
tcaggaagtcccctcagaggagcctgctatcatttgtttacataaggttt
tattttacatcacttgtatactgcttgggaattaaaacatttgggggggt
tcttttttttttttttttttgttctttgtttttttactctttttccccct
ttccattctttttctgtatttctggccttttcttttcctactttttcttt
cttattagttttacacccataacatattgaaataggacacattttgcctt
cttcttctgtccatttttttcttcctttctttcttccttctttccttcct
tccttccttccttccttcctttcatccttccttccttccttccttccttc
cctcctagaccagatggtcacacacaagtaaaatatctgtggcatggttt
gtatatgtttgagacagggagagagtggcactattagaaggtatggactt
gttaaaattggtatggccctgttggaataggtgtgtcactgttggcatga
actataaagaccctcatcctagctgactgcaagccagtcttctcctagca
gccttctgatgaaggctctcagctctgcctgtaccatgtctgcctggatg
ctgaccatgttcccaccttgatgataatggactgaatcactgaaccttgt
aagccagccccaattaaatgttgtcctgtaagagttgccttggtcgtggt
gtctgctggcaccattaaatcctaac
gaattctgggctccaggttacccaggaaggctgtgcaagcaatgggtgct
cttccatcttccctcactgtgttgaaagcatgactgcctttctgtgaagc
tgtgtgcagggcttacagaccacaggcatcttcagggagcccctgggcca
catggcgtgtgggcttctgagatgtccacaagtaaagatgacacctagat
gctgccttcagagagcttgtaagagaaaggaagtctgtggagtgggaacg
agaaataagaacagaatcaaaggtgcaaaccccagtgtcctctttacatg
caatggagtcatctgggctgcagtcaacttcccatctttgcatatgaggc
ataactgtgtgattcatctaatgggcacccaggccttaatggaaggttta
aattaagcactctgtgtttataaccatccatattataatgatgtttatgg
tgtttataaccatccatattataatgatgtagcttttggtatcttccact
ttgaatcagaaattaattttagtctttgattatggagtataaattcatga
gcataaaacatatcgacccagcctgacccaggtttctagaagaataatct
agagtgtatttgctaagcagtagcgttgttattgtagctaagggaggact
ttacataaggcaggaacggaatttacgtggagaggatcctaatatggctt
tgatcctggtgaggcttacgggcttgttcaccaacagaaaggtgacaaag
aaggctcttcttagaattgaagacccagaaatgaacccacacacctatgg
gtcacttgatcttcgacaagggagctaaatccatccagtggaagaaagac
agcattttcaacaattggtgctggcacacctggttgttatcgtgtagaag
aatgcgaatcgatccatacttatctccttgtactaaggtcaatctaagtg
gatcaaggaacttcacataaaccagagaacactgaaacttatagaggagg
aaggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83091899_83092674
seq2: B6Ng01-216K05.b_41_816 (reverse)

seq1  GTTAGGATTTTACTGCTGCCAGCAGACACCACGACCAAGGCAACTCTTAC  50
      ||||||| |||| || ||||||||||||||||||||||||||||||||||
seq2  GTTAGGA-TTTAATGGTGCCAGCAGACACCACGACCAAGGCAACTCTTAC  49

seq1  AGGGACAACATTTAATTGGGGCTGGCTTAC-AGGTTCAGTGATTCAGTCC  99
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  A-GGACAACATTTAATTGGGGCTGGCTTACAAGGTTCAGTGATTCAGTCC  98

seq1  ATTATCATCAAGGTGGGAACATGGTCAGCATCCAGGCAGACATGGTACAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCAAGGTGGGAACATGGTCAGCATCCAGGCAGACATGGTACAG  148

seq1  GCAGAGCTGAGAGCCTTCATCTGAAGGCTGCTAGGAGAAGACTGGCTTGC  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAGAGCTGAGAGCCTTCATCAGAAGGCTGCTAGGAGAAGACTGGCTTGC  198

seq1  AGTCAGCTAGGATGAGGGTC-TTATAGTTCATGCCAACAGTGACACACCT  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTCAGCTAGGATGAGGGTCTTTATAGTTCATGCCAACAGTGACACACCT  248

seq1  ATTCCAACAGGGCCATACCAATTTTAACAAGTCCATACCTTCTAATAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACAGGGCCATACCAATTTTAACAAGTCCATACCTTCTAATAGTG  298

seq1  CCACTCTCTCCCTGTCTCAAACATATACAAACCATGCCACAGATATTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTCCCTGTCTCAAACATATACAAACCATGCCACAGATATTTTA  348

seq1  CTTGTGTGTGACCATCTGGTCTAGGAGGGAAGGAAGGAAGGAAGGAAGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTGACCATCTGGTCTAGGAGGGAAGGAAGGAAGGAAGGAAGGA  398

seq1  AGGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGAAAG  448
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGAAAG  448

seq1  AAAGGAAGAAAAAAATGGACAGAAGAAGAAGGCAAAATGTGTCCTATTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAAAAAAATGGACAGAAGAAGAAGGCAAAATGTGTCCTATTTC  498

seq1  AATATGTTATGGGTGTAAAACTAATAAGAAAGAAAAAGTAGGAAAAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTATGGGTGTAAAACTAATAAGAAAGAAAAAGTAGGAAAAGAAA  548

seq1  AGGCCAGAAATACAGAAAAAGAATGGAAAGGGGGAAAAAGAGTAAAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAAATACAGAAAAAGAATGGAAAGGGGGAAAAAGAGTAAAAAAA  598

seq1  CAAAGAACAAAAAAAAAAAAAAAAAAGAACCCCCCCAAATGTTTTAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACAAAAAAAAAAAAAAAAAAGAACCCCCCCAAATGTTTTAATTC  648

seq1  CCAAGCAGTATACAAGTGATGTAAAATAAAACCTTATGTAAACAAATGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGTATACAAGTGATGTAAAATAAAACCTTATGTAAACAAATGAT  698

seq1  AGCAGGCTCCTCTGAGGGGACTTCCTGAACTTCTGTACTTTTAGCGGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTCCTCTGAGGGGACTTCCTGAACTTCTGTACTTTTAGCGGTGT  748

seq1  TTGGGAAAGTGATCACGGAGAAGAATTC  776
      ||||||||||||||||||||||||||||
seq2  TTGGGAAAGTGATCACGGAGAAGAATTC  776

seq1: chr1_82952814_82953820
seq2: B6Ng01-216K05.g_69_1077

seq1  GAATTCTGGGCTCCAGG-GACCCAGGAAGGCTGTGCAAGCAATGGGTGCT  49
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTCCAGGTTACCCAGGAAGGCTGTGCAAGCAATGGGTGCT  50

seq1  CTTCCATCTTCCCTCACTGTGTTGAAAGCATGACTGCCTTTCTGTGAAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCTTCCCTCACTGTGTTGAAAGCATGACTGCCTTTCTGTGAAGC  100

seq1  TGTGTGCAGGGCTTACAGACCACAGGCATCTTCAGGGAGCCCCTGGGCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCAGGGCTTACAGACCACAGGCATCTTCAGGGAGCCCCTGGGCCA  150

seq1  CATGGCGTGTGGGCTTCTGAGATGTCCACAAGTAAAGATGACACCTAGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGTGTGGGCTTCTGAGATGTCCACAAGTAAAGATGACACCTAGAT  200

seq1  GCTGCCTTCAGAGAGCTTGTAAGAGAAAGGAAGTCTGTGGAGTGGGAACG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTCAGAGAGCTTGTAAGAGAAAGGAAGTCTGTGGAGTGGGAACG  250

seq1  AGAAATAAGAACAGAATCAAAGGTGCAAACCCCAGTGTCCTCTTTACATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGAACAGAATCAAAGGTGCAAACCCCAGTGTCCTCTTTACATG  300

seq1  CAATGGAGTCATCTGGGCTGCAGTCAACTTCCCATCTTTGCATATGAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGTCATCTGGGCTGCAGTCAACTTCCCATCTTTGCATATGAGGC  350

seq1  ATAACTGTGTGATTCATCTAATGGGCACCCAGGCCTTAATGGAAGGTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTGTGATTCATCTAATGGGCACCCAGGCCTTAATGGAAGGTTTA  400

seq1  AATTAAGCACTCTGTGTTTATAACCATCCATATTATAATGATGTTTATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCACTCTGTGTTTATAACCATCCATATTATAATGATGTTTATGG  450

seq1  TGTTTATAACCATCCATATTATAATGATGTAGCTTTTGGTATCTTCCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAACCATCCATATTATAATGATGTAGCTTTTGGTATCTTCCACT  500

seq1  TTGAATCAGAAATTAATTTTAGTCTTTGATTATGGAGTATAAATTCATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCAGAAATTAATTTTAGTCTTTGATTATGGAGTATAAATTCATGA  550

seq1  GCATAAAACATATCGACCCAGCCTGACCCAGGTTTCTAGAAGAATAATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAACATATCGACCCAGCCTGACCCAGGTTTCTAGAAGAATAATCT  600

seq1  AGAGTGTATTTGCTAAGCAGTAGCGTTGTTATTGTAGCTAAGGGAGGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTATTTGCTAAGCAGTAGCGTTGTTATTGTAGCTAAGGGAGGACT  650

seq1  TTACATAAGGCAGGAACGGAATTTACGTGGAGAGGATCCTAATATGGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAGGCAGGAACGGAATTTACGTGGAGAGGATCCTAATATGGCTT  700

seq1  TGATCCTGGTGAGGCTTACGGGCTTGTTCACCAACAGAAAGGTGACAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGGTGAGGCTTACGGGCTTGTTCACCAACAGAAAGGTGACAAAG  750

seq1  AAGGCTCTTCTTAGAATTGAAGACCCAGAAATGAACCCACACACCTAT-G  798
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGGCTCTTCTTAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG  800

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAATCCATCCAGTGGAAGAAAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCTAAATCCATCCAGTGGAAGAAAGAC  850

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAG  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACACCTGGTTGTTATCGTGTAGAAG  900

seq1  AATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  948
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC-AATCTAAGT  949

seq1  GGATCAAGGAACTTCACATAAAACCAGAG-ACACTGAAACTTATAGAGGA  997
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GGATCAAGGAACTTCACAT-AAACCAGAGAACACTGAAACTTATAGAGGA  998

seq1  -GAAAGTGGGG  1007
       ||| ||||||
seq2  GGAAGGTGGGG  1009