BAC Information

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BAC

Clone NameB6Ng01-217A03
Chromosome1 (Build37)
Map Location 45,653,831 - 45,759,778
singlet/doubletdoublet
Overlap geneLOC666814
Upstream geneGulp1, LOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429
Downstream geneEG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217A03.bB6Ng01-217A03.g
ACCGA033543GA033544
length1,1991,084
definitionB6Ng01-217A03.b B6Ng01-217A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,758,578 - 45,759,778)(45,653,831 - 45,654,922)
sequence
gaattccattttgtggaatgtttttagttcttcaatcgctaatagcaatt
aagtatatgtggaactagagcaagtatattatattaaagacaaggtaccc
agagactttgatgtctgttcagatgtccagaagcagggactgtgttctca
ctttcctctgctgattgccatggcttctttattaaagattagctgagtat
atacatgtgggtttgttgctggattttctattgtattcttcatcagtagt
atatagctttataggaagttttaaagtcacatccaaaataatgtaaaaca
cattgaacaaaagatgatgatgtatgaacagtatgttctttttaactttg
taacttttagttgaagataatgaatatatatacatatattcattattatt
atgtatacatatatatgcttatatatcaatatctatctgtttgtctatct
gtctgtctgtctatctgtttgtctatattcatgcaagtatttgagtgaaa
tgtttgattttttttcttttcttttttttgttttttgttttgttttgttt
ttgttttagttttagtttttgtttttcaagacagggtttctctgtgtagc
cctggctgttctggaactcactttgtagaccaagctggccttgaaacttg
aaaactcagaaatccacttgcctctgcctcccaagtgctgggattaaagg
catgtgcctccactgtctggtaaagtgaaatgtttgaaattaggtatttc
cttagcaatgatcatgaattcacatatttacaagtctataggagagggaa
cttttatttgcctatgctagcttcaaattcacaaacatcctgtctcagcc
ttccaaatgctagggttataggatatgctactgttcctggcagtacagtg
gtttataatttggtctgtaccaatgtctactataacaattgaagttcaca
gctgataaaagttttacaatagaagattgaaaatagactagatatttaaa
agacatttagaaataacttggaatattaaaaagaattctttgaagttaag
atggttccaggcctctgcgttactccttttagtgttgcatagaaccattc
tgaaatttttggttttttccacataagattgagaacattggtgcacttag
aaaataattttgcaggatttgctgatagtggtgtgagtctgcgtgactg

gaattcattcagcatattcagattgcttaatttctattgtgtgtaagaat
catgggtgaaaacattaagagtttaccatcgagttacatatgtttaattg
aaattatatttcctgcaatagtctttaatcctatacaaatgcattgcaat
aacgtcttaggtaaagaacattcctgaaaaccataaagaaaataagagaa
aagtgaccacaaaaaaaaaaaagatgtctggaaagactgtttaaaaagta
atgagctttacagattgattgaaaacatcaagaaatcctccaaaggatat
ttgcatttggtcagtcagtcagtcagtcagtcagaatagacttggcaatt
tgtcaagagaaatatgaataaaagttcctctcctccatcacacagtacac
tctaatcagacgacagctagctaggtcttggtttcatttctaaaagtcag
taacataaatatttggctttatgaactggcttagatttccttttctttca
gcttagaaaacatgcagctcccactcacacaggatttggggaagactcta
atgatcctcccattcatagacattcgtctttactttggctagtggctggg
gcaaagctgtcatgtctatcactcattacagaggtctgaggttccagcca
agttttaggaaactcactctgctatagcaacagactaaacagacaaaaag
gcagagtgagaagaggtaagtgcttccagagtcaaggaatatggaagtaa
gacatttccaaagcacaatcacagaaaataagaaccaagaccattcctat
cctcgccaatggctaagtagaagtataaatacttaattatctactagtgt
tttaccagttctaggaatttgtttaatgctttaacttgaatttgccatga
actaaatatacaaagattaacttgaaaataaaagtttaaaacagcaattt
tcaaatactaattcatcatttgaagtatttacatacagacttccagtgaa
aactttagcagcaccaaatgtaagtaatagaagaaaagcagatctcttac
tgtgatctgggccatgtaagcaccttgggagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45758578_45759778
seq2: B6Ng01-217A03.b_44_1242 (reverse)

seq1  CAGTCA-GCAGACTCAACACACTATCAAGCAAAATCCCTGC-AATCTATT  48
      |||||| |||||||||   ||||||| ||||||   ||||| ||  ||||
seq2  CAGTCACGCAGACTCACACCACTATC-AGCAAA--TCCTGCAAAATTATT  47

seq1  TTCTAAATGTTGGCAACAATGTTCTCAAATCTATGT-GAAAAAAACAAAA  97
      |||||| |    ||| ||||||||||||   ||||| ||||||| |||||
seq2  TTCTAAGT----GCACCAATGTTCTCAATCTTATGTGGAAAAAACCAAAA  93

seq1  ATTTCAGAATG--TCTAGTGCAACACTAAA--GAGTAACGCAGAGGCCTG  143
      |||||||||||  |||| ||||||||||||  ||||||||||||||||||
seq2  ATTTCAGAATGGTTCTA-TGCAACACTAAAAGGAGTAACGCAGAGGCCTG  142

seq1  AAACCATC-TAACTTC-AAGAATTCTTTTTAAATATTCCAAGTTATTTCT  191
       ||||||| ||||||| ||||||||||||| |||||||||||||||||||
seq2  GAACCATCTTAACTTCAAAGAATTCTTTTT-AATATTCCAAGTTATTTCT  191

seq1  AAATGTCTTTTAAATATCTAGTCTA-TTTCAATCTTTCTATTGTTAAAAC  240
      ||||||||||||||||||||||||| |||||||| |||||||| ||||||
seq2  AAATGTCTTTTAAATATCTAGTCTATTTTCAATC-TTCTATTG-TAAAAC  239

seq1  TTTTATCAGCTGTGAACTTCAATTGTTATAGTAGAACATTGGTACAGACC  290
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTATCAGCTGTGAACTTCAATTGTTATAGTAG-ACATTGGTACAGACC  288

seq1  AAATTATAAACCACTGTACTGCCAGGAACAGTAGCATATCCTATAACCCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAAACCACTGTACTGCCAGGAACAGTAGCATATCCTATAACCCT  338

seq1  AGCATTTGGAAGGCTGAGACAGGATGTTTGTGAATTTGAAGCTAGCATAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGGAAGGCTGAGACAGGATGTTTGTGAATTTGAAGCTAGCATAG  388

seq1  GCAAATAAAAGTTCCCTCTCCTATAGACTTGTAAATATGTGAATTCATGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAAAAGTTCCCTCTCCTATAGACTTGTAAATATGTGAATTCATGA  438

seq1  TCATTGCTAAGGAAATACCTAATTTCAAACATTTCACTTTACCAGACAGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTAAGGAAATACCTAATTTCAAACATTTCACTTTACCAGACAGT  488

seq1  GGAGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGTGGAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGTGGAT  538

seq1  TTCTGAGTTTTCAAGTTTCAAGGCCAGCTTGGTCTACAAAGTGAGTTCCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTTCAAGTTTCAAGGCCAGCTTGGTCTACAAAGTGAGTTCCA  588

seq1  GAACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAACTAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAACTAA  638

seq1  AACTAAAACAAAAACAAAACAAAACAAAAAACAAAAAAAAGAAAAGAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAACAAAAACAAAACAAAACAAAAAACAAAAAAAAGAAAAGAAAA  688

seq1  AAAATCAAACATTTCACTCAAATACTTGCATGAATATAGACAAACAGATA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAACATTTCACTCAAATACTTGCATGAATATAGACAAACAGATA  738

seq1  GACAGACAGACAGATAGACAAACAGATAGATATTGATATATAAGCATATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGATAGACAAACAGATAGATATTGATATATAAGCATATA  788

seq1  TATGTATACATAATAATAATGAATATATGTATATATATTCATTATCTTCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATACATAATAATAATGAATATATGTATATATATTCATTATCTTCA  838

seq1  ACTAAAAGTTACAAAGTTAAAAAGAACATACTGTTCATACATCATCATCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGTTACAAAGTTAAAAAGAACATACTGTTCATACATCATCATCT  888

seq1  TTTGTTCAATGTGTTTTACATTATTTTGGATGTGACTTTAAAACTTCCTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAATGTGTTTTACATTATTTTGGATGTGACTTTAAAACTTCCTA  938

seq1  TAAAGCTATATACTACTGATGAAGAATACAATAGAAAATCCAGCAACAAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTATATACTACTGATGAAGAATACAATAGAAAATCCAGCAACAAA  988

seq1  CCCACATGTATATACTCAGCTAATCTTTAATAAAGAAGCCATGGCAATCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGTATATACTCAGCTAATCTTTAATAAAGAAGCCATGGCAATCA  1038

seq1  GCAGAGGAAAGTGAGAACACAGTCCCTGCTTCTGGACATCTGAACAGACA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAAAGTGAGAACACAGTCCCTGCTTCTGGACATCTGAACAGACA  1088

seq1  TCAAAGTCTCTGGGTACCTTGTCTTTAATATAATATACTTGCTCTAGTTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCTCTGGGTACCTTGTCTTTAATATAATATACTTGCTCTAGTTC  1138

seq1  CACATATACTTAATTGCTATTAGCGATTGAAGAACTAAAAACATTCCACA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACTTAATTGCTATTAGCGATTGAAGAACTAAAAACATTCCACA  1188

seq1  AAATGGAATTC  1201
      |||||||||||
seq2  AAATGGAATTC  1199


seq1: chr1_45653831_45654922
seq2: B6Ng01-217A03.g_63_1146

seq1  GAATTCATTCAGCATATTCAGATTGCTTAATTTCTATTGTGTGTAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGCATATTCAGATTGCTTAATTTCTATTGTGTGTAAGAAT  50

seq1  CATGGGTGAAAACATTAAGAGTTTACCATCGAGTTACATATGTTTAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTGAAAACATTAAGAGTTTACCATCGAGTTACATATGTTTAATTG  100

seq1  AAATTATATTTCCTGCAATAGTCTTTAATCCTATACAAATGCATTGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTTCCTGCAATAGTCTTTAATCCTATACAAATGCATTGCAAT  150

seq1  AACGTCTTAGGTAAAGAACATTCCTGAAAACCATAAAGAAAATAAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTTAGGTAAAGAACATTCCTGAAAACCATAAAGAAAATAAGAGAA  200

seq1  AAGTGACCACAAAAAAAAAAAAGATGTCTGGAAAGACTGTTTAAAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCACAAAAAAAAAAAAGATGTCTGGAAAGACTGTTTAAAAAGTA  250

seq1  ATGAGCTTTACAGATTGATTGAAAACATCAAGAAATCCTCCAAAGGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTTACAGATTGATTGAAAACATCAAGAAATCCTCCAAAGGATAT  300

seq1  TTGCATTTGGTCAGTCAGTCAGTCAGTCAGTCAGAATAGACTTGGCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTGGTCAGTCAGTCAGTCAGTCAGTCAGAATAGACTTGGCAATT  350

seq1  TGTCAAGAGAAATATGAATAAAAGTTCCTCTCCTCCATCACACAGTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGAGAAATATGAATAAAAGTTCCTCTCCTCCATCACACAGTACAC  400

seq1  TCTAATCAGACGACAGCTAGCTAGGTCTTGGTTTCATTTCTAAAAGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCAGACGACAGCTAGCTAGGTCTTGGTTTCATTTCTAAAAGTCAG  450

seq1  TAACATAAATATTTGGCTTTATGAACTGGCTTAGATTTCCTTTTCTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAATATTTGGCTTTATGAACTGGCTTAGATTTCCTTTTCTTTCA  500

seq1  GCTTAGAAAACATGCAGCTCCCACTCACACAGGATTTGGGGAAGACTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAAACATGCAGCTCCCACTCACACAGGATTTGGGGAAGACTCTA  550

seq1  ATGATCCTCCCATTCATAGACATTCGTCTTTACTTTGGCTAGTGGCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCTCCCATTCATAGACATTCGTCTTTACTTTGGCTAGTGGCTGGG  600

seq1  GCAAAGCTGTCATGTCTATCACTCATTACAGAGGTCTGAGGTTCCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTGTCATGTCTATCACTCATTACAGAGGTCTGAGGTTCCAGCCA  650

seq1  AGTTTTAGGAAACTCACTCTGCTATAGCAACAGACTAAACAGACAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGGAAACTCACTCTGCTATAGCAACAGACTAAACAGACAAAAAG  700

seq1  GCAGAGTGAGAAGAGGTAAGTGCTTCCAGAGTCAAGGAATATGGAAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGAGAAGAGGTAAGTGCTTCCAGAGTCAAGGAATATGGAAGTAA  750

seq1  GACATTTCCAAAGCACAATCACAGAAAATAAGAACCAAGACCATTCCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCCAAAGCACAATCACAGAAAATAAGAACCAAGACCATTCCTAT  800

seq1  CCTCGCCAATGGCTAAGTAGAAGTATAAATACTTAATTATCTACTAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCAATGGCTAAGTAGAAGTATAAATACTTAATTATCTACTAGTGT  850

seq1  TTTACCAGTTCTAGGAATTTGTTTAATGCTTTAACTTGAATTTGCCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAGTTCTAGGAATTTGTTTAATGCTTTAACTTGAATTTGCCATGA  900

seq1  ACTAAATATACAAAGATTAACTTGAAAATAAAAGTTTAAAAACAGCAATT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTAAATATACAAAGATTAACTTGAAAATAAAAGTTT-AAAACAGCAATT  949

seq1  TTCAAATACTAATTCATCATTTGAAGGTATTTACATACAGACTTCCAGGT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TTCAAATACTAATTCATCATTTGAA-GTATTTACATACAGACTTCCA-GT  997

seq1  GAAAAACTTTTAGCAGCACCAAATGTAAGTAATAG-AGAAAAGCCAGAAT  1049
      |||||   ||||||||||||||||||||||||||| ||||||| ||| ||
seq2  GAAAA--CTTTAGCAGCACCAAATGTAAGTAATAGAAGAAAAG-CAG-AT  1043

seq1  CTCCTTACTGTGATTCTGGG-CATGTTAAAGCACC-TGGGAGTGA  1092
      || |||||||||| |||||| |||||  ||||||| |||||||||
seq2  CT-CTTACTGTGA-TCTGGGCCATGT--AAGCACCTTGGGAGTGA  1084


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