BAC Information

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BAC

Clone NameB6Ng01-217C24
Chromosome1 (Build37)
Map Location 34,104,247 - 34,250,918
singlet/doubletdoublet
Overlap geneDst
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217C24.bB6Ng01-217C24.g
ACCGA033666GA033667
length1,1401,045
definitionB6Ng01-217C24.b B6Ng01-217C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,249,790 - 34,250,918)(34,104,247 - 34,105,295)
sequence
gaattcttctgccaactttagatctttccttaaaaatacagcgatggggg
ccaatcccaactcaaaggcctgcaaacaaacacagtcccgcatctgttga
ccacgcaggaagaagcataaacccaaacacgaggagtgagagagaagggc
accctgctttctgcgaaattatgtattaaacagcaccattcatggaccac
tctctactggagctggggcccggatgtctcccccaagacctgtacttcaa
accttggcttggtgctacaaaggagaaattgaaacttttagtaggaggac
gttagatccctggagctgtccactctcaaaggtgccaggggcactctgcc
ctttcttcttctgcctttcagactgaagtgaagaattgccttgccacaaa
accagatgtgacaggactaagagaccacaggttacagcctctgaaggcat
gggcccaaatgaaccccacccccacccccgctttacttgattgctgatgg
aaagctgacaggaatgccagtgggtatcttacctctaactgcttcagctg
actcttcaaggcttctagactgctctccacagatgcctgattgtctaagg
ggggtttcatatcttgaagcaaaaccaaatattcatgcattttctcagta
tgctgtaaacactgttgcaagccattggaacactaaaaccaagattggat
acagtaattagcagtccttagggaagaaacttaaagcagacaaaatgtat
gagattgtctcccacgtttcccactggaactgtcatgggaaaccacgtat
gtcaactcactttttccttcgagctactgtcagaagacctttcttttgat
ccagatgtactttctgaatgctctggggggctcgctgcaaagttctccga
gcttctcacctcctgggcagtgctgctatgtgcaacactgaaagggtcta
cctcggcttcttcctacagcttggtgggtttcagggacaagtgatgtcct
tctttgtttcttgaggtcactgcagacgtgtggccttttcttcttgccat
ctgggaacagcacatgatttttgccccaaagctccggcctggactttttc
agtggccataccaatcaaacagcagcttgttaaaacggca
gaattcatggaagacaaggagttatccaacacttgatgaatgccaatgtt
ttatatcggattggctggcagccaggtacaagcagcattcagaaggagac
ataattttttccctttataagaggccacatggacattgggctcccatggg
catcaatgggtgttatgtgcgtagagcaagggaaaggtcttactaccaaa
aagcagggcactgtgctatataaaagataaattggtatgctctcattagc
tcatgttttgttctaaaagatatctttgtcatgaggccctcttataaaag
agcggctgacagtaagcatcagtacttgatagaactctcagtagttgaat
cagaccttattaatttaagaaaaaaaaaaaaacagaacaacctagtggta
gagaagtccagacaaaaatatgtattgaagtctcccatgtgcaatttgtc
agtggtacttgccaagaagctcctgatgccgcaagtttagacgactgact
gaaatcctttcctcaggagtctgaagggatgggacccgtccataaatcta
taaagataggaaagtttttgcacattgttcacaggggtctgaaaatgtaa
ttttaattatgtgtatattcctatacttcaaatatatagcattgttctat
gaattcatattattcggtctgcttacaatgctgttgtcaaattctacttc
agacttagcaagtaagcagattagtaaaaaataaatatgtggaaatggcg
gtgggtagtccgtgattagaaggcaggattagcttccactgcttaccaat
aagatcggagcacatggtaaactttatgtctttgcttctgtgcacccgaa
gttttcaagggttctttcagacatcctctatacagggtgtttgtggcctg
caaaggactgggacttccgtggtgtaaattacaaagagaaaatgacagtt
tccttaggttgagtgacgtctatctctgctgggcttgtaaggagagacat
ctctgtcactggctggcttatatccgagtgagtaaacactcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_34249790_34250918
seq2: B6Ng01-217C24.b_44_1183 (reverse)

seq1  TGCC--TTTTACAAGCTGCTGTTTGATGGGTAT-GCAACTGAAAAAGACC  47
      ||||  ||| ||||||||||||||||| ||||| || |||||||||| ||
seq2  TGCCGTTTTAACAAGCTGCTGTTTGATTGGTATGGCCACTGAAAAAGTCC  50

seq1  AGGCCGAAGCTTTGGGGCAAACATCATGTGCTGTTCCCAAGATGGC-AGA  96
      |||||| |||||||||||||| |||||||||||||||| ||||||| |||
seq2  AGGCCGGAGCTTTGGGGCAAAAATCATGTGCTGTTCCC-AGATGGCAAGA  99

seq1  AGAAAA-GCCACACGTCTGCAGTGACCTC-AGAAACAAAGAAGGACATCA  144
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAAAGGCCACACGTCTGCAGTGACCTCAAGAAACAAAGAAGGACATCA  149

seq1  C-TGTCCCCTGAACCCA-CAAGCTGTAGG-AGAAGCCGAGGTAGAACCCT  191
      | ||||||   |||||| ||||||||||| ||||||||||||||| || |
seq2  CTTGTCCCTGAAACCCACCAAGCTGTAGGAAGAAGCCGAGGTAGACCCTT  199

seq1  TCAGTG-TGCACATAGCAGCACTG-CCAGGAGGTGAGAAGCTCGGAGAAC  239
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TCAGTGTTGCACATAGCAGCACTGCCCAGGAGGTGAGAAGCTCGGAGAAC  249

seq1  TTTGCAGCGAG-CCCCCAGAGCATTCAGAAAGTACATCTGGATCAAAAGA  288
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCGAGCCCCCCAGAGCATTCAGAAAGTACATCTGGATCAAAAGA  299

seq1  AAGGTCTTCTGACAGTAGCTCGAAGGAAAAAGTGAGTTGACATACGTGGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTCTGACAGTAGCTCGAAGGAAAAAGTGAGTTGACATACGTGGT  349

seq1  TTCCCATGACAGTTCCAGTGGGAAACGTGGGAGACAATCTCATACATTTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGACAGTTCCAGTGGGAAACGTGGGAGACAATCTCATACATTTT  399

seq1  GTCTGCTTTAAGTTTCTTCCCTAAGGACTGCTAATTACTGTATCCAATCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTAAGTTTCTTCCCTAAGGACTGCTAATTACTGTATCCAATCT  449

seq1  TGGTTTTAGTGTTCCAATGGCTTGCAACAGTGTTTACAGCATACTGAGAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTAGTGTTCCAATGGCTTGCAACAGTGTTTACAGCATACTGAGAA  499

seq1  AATGCATGAATATTTGGTTTTGCTTCAAGATATGAAACCCCCCTTAGACA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGAATATTTGGTTTTGCTTCAAGATATGAAACCCCCCTTAGACA  549

seq1  ATCAGGCATCTGTGGAGAGCAGTCTAGAAGCCTTGAAGAGTCAGCTGAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCATCTGTGGAGAGCAGTCTAGAAGCCTTGAAGAGTCAGCTGAAG  599

seq1  CAGTTAGAGGTAAGATACCCACTGGCATTCCTGTCAGCTTTCCATCAGCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGAGGTAAGATACCCACTGGCATTCCTGTCAGCTTTCCATCAGCA  649

seq1  ATCAAGTAAAGCGGGGGTGGGGGTGGGGTTCATTTGGGCCCATGCCTTCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTAAAGCGGGGGTGGGGGTGGGGTTCATTTGGGCCCATGCCTTCA  699

seq1  GAGGCTGTAACCTGTGGTCTCTTAGTCCTGTCACATCTGGTTTTGTGGCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTAACCTGTGGTCTCTTAGTCCTGTCACATCTGGTTTTGTGGCA  749

seq1  AGGCAATTCTTCACTTCAGTCTGAAAGGCAGAAGAAGAAAGGGCAGAGTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTCTTCACTTCAGTCTGAAAGGCAGAAGAAGAAAGGGCAGAGTG  799

seq1  CCCCTGGCACCTTTGAGAGTGGACAGCTCCAGGGATCTAACGTCCTCCTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCACCTTTGAGAGTGGACAGCTCCAGGGATCTAACGTCCTCCTA  849

seq1  CTAAAAGTTTCAATTTCTCCTTTGTAGCACCAAGCCAAGGTTTGAAGTAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTTTCAATTTCTCCTTTGTAGCACCAAGCCAAGGTTTGAAGTAC  899

seq1  AGGTCTTGGGGGAGACATCCGGGCCCCAGCTCCAGTAGAGAGTGGTCCAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTGGGGGAGACATCCGGGCCCCAGCTCCAGTAGAGAGTGGTCCAT  949

seq1  GAATGGTGCTGTTTAATACATAATTTCGCAGAAAGCAGGGTGCCCTTCTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTGCTGTTTAATACATAATTTCGCAGAAAGCAGGGTGCCCTTCTC  999

seq1  TCTCACTCCTCGTGTTTGGGTTTATGCTTCTTCCTGCGTGGTCAACAGAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCCTCGTGTTTGGGTTTATGCTTCTTCCTGCGTGGTCAACAGAT  1049

seq1  GCGGGACTGTGTTTGTTTGCAGGCCTTTGAGTTGGGATTGGCCCCCATCG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGACTGTGTTTGTTTGCAGGCCTTTGAGTTGGGATTGGCCCCCATCG  1099

seq1  CTGTATTTTTAAGGAAAGATCTAAAGTTGGCAGAAGAATTC  1129
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTTTAAGGAAAGATCTAAAGTTGGCAGAAGAATTC  1140

seq1: chr1_34104247_34105295
seq2: B6Ng01-217C24.g_67_1111

seq1  GAATTCATGGAAGACAAGGAGTTATCCAACACTTGATGAATGCCAATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAAGACAAGGAGTTATCCAACACTTGATGAATGCCAATGTT  50

seq1  TTATATCGGATTGGCTGGCAGCCAGGTACAAGCAGCATTCAGAAGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCGGATTGGCTGGCAGCCAGGTACAAGCAGCATTCAGAAGGAGAC  100

seq1  ATAATTTTTTCCCTTTATAAGAGGCCACATGGACATTGGGCTCCCATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTTCCCTTTATAAGAGGCCACATGGACATTGGGCTCCCATGGG  150

seq1  CATCAATGGGTGTTATGTGCGTAGAGCAAGGGAAAGGTCTTACTACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGGGTGTTATGTGCGTAGAGCAAGGGAAAGGTCTTACTACCAAA  200

seq1  AAGCAGGGCACTGTGCTATATAAAAGATAAATTGGTATGCTCTCATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGGCACTGTGCTATATAAAAGATAAATTGGTATGCTCTCATTAGC  250

seq1  TCATGTTTTGTTCTAAAAGATATCTTTGTCATGAGGCCCTCTTATAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTGTTCTAAAAGATATCTTTGTCATGAGGCCCTCTTATAAAAG  300

seq1  AGCGGCTGACAGTAAGCATCAGTACTTGATAGAACTCTCAGTAGTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTGACAGTAAGCATCAGTACTTGATAGAACTCTCAGTAGTTGAAT  350

seq1  CAGACCTTATTAATTTAAGAAAAAAAAAAAAACAGAACAACCTAGTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTATTAATTTAAGAAAAAAAAAAAAACAGAACAACCTAGTGGTA  400

seq1  GAGAAGTCCAGACAAAAATATGTATTGAAGTCTCCCATGTGCAATTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCCAGACAAAAATATGTATTGAAGTCTCCCATGTGCAATTTGTC  450

seq1  AGTGGTACTTGCCAAGAAGCTCCTGATGCCGCAAGTTTAGACGACTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTACTTGCCAAGAAGCTCCTGATGCCGCAAGTTTAGACGACTGACT  500

seq1  GAAATCCTTTCCTCAGGAGTCTGAAGGGATGGGACCCGTCCATAAATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTTTCCTCAGGAGTCTGAAGGGATGGGACCCGTCCATAAATCTA  550

seq1  TAAAGATAGGAAAGTTTTTGCACATTGTTCACAGGGGTCTGAAAATGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAGGAAAGTTTTTGCACATTGTTCACAGGGGTCTGAAAATGTAA  600

seq1  TTTTAATTATGTGTATATTCCTATACTTCAAATATATAGCATTGTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATGTGTATATTCCTATACTTCAAATATATAGCATTGTTCTAT  650

seq1  GAATTCATATTATTCGGTCTGCTTACAATGCTGTTGTCAAATTCTACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTATTCGGTCTGCTTACAATGCTGTTGTCAAATTCTACTTC  700

seq1  AGACTTAGCAAGTAAGCAGATTAGTAAAAAATAAATATGTGGAAATGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGCAAGTAAGCAGATTAGTAAAAAATAAATATGTGGAAATGGCG  750

seq1  GTGGGTAGTCCGTGATTAGAAGGCAGGATTAGCTTCCACTGCTTACCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGTCCGTGATTAGAAGGCAGGATTAGCTTCCACTGCTTACCAAT  800

seq1  AAGATCGGAGCACATGGTAAACTTTATGTCTTTGCTTCTGTGCACCCGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCGGAGCACATGGTAAACTTTATGTCTTTGCTTCTGTGCACCCGAA  850

seq1  GTTTTCAAGGGTTC-TTCAGACATCCTCTATACAGGGTGTTTGTGGCCTG  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAGGGTTCTTTCAGACATCCTCTATACAGGGTGTTTGTGGCCTG  900

seq1  CAAAGGACT-GGACTTCCGT-GTGT-AATTACAAAGAGAAAATGACAAGT  946
      ||||||||| |||||||||| |||| |||||||||||||||||||||  |
seq2  CAAAGGACTGGGACTTCCGTGGTGTAAATTACAAAGAGAAAATGACAGTT  950

seq1  TCC-TAGGTTGAGTGAACGGTCTAATTCTCTTGCTGGGCTTTGTAAGAGA  995
      ||| ||||||||||||   |||||  |||| |||||||| |||||||   
seq2  TCCTTAGGTTGAGTGA--CGTCTA--TCTC-TGCTGGGC-TTGTAAGGAG  994

seq1  AGACATCTCTGGTCACTGGCTGGCTTATTATCCGAGTGAAGTACACACTC  1045
      |||||||||| |||||||||||||||| |||||||||| |||| ||||||
seq2  AGACATCTCT-GTCACTGGCTGGCTTA-TATCCGAGTG-AGTAAACACTC  1041

seq1  AGCA  1049
      ||||
seq2  AGCA  1045