BAC Information

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BAC

Clone NameB6Ng01-217N20
Chromosome1 (Build37)
Map Location 191,484,080 - 191,664,147
singlet/doubletdoublet
Overlap geneCenpf, Ptpn14, LOC100042438
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307
Downstream geneSmyd2, Prox1, LOC100039394, EG666975, Rps6kc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217N20.bB6Ng01-217N20.g
ACCGA034147GA034148
length1,094657
definitionB6Ng01-217N20.b B6Ng01-217N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(191,484,080 - 191,485,181)(191,663,494 - 191,664,147)
sequence
gaattctataaataaaatataattttaaactctaaaaaaatataaaagta
ttgaaattaataggctgtcacatcctgtaaaacttgacattaatgctgaa
gtccttgaaagtaatacacctaattttaattaccttagttattatttttc
tgatatctcaagtagcttcataaaaatgatgtataaaacaacaataagga
agtttagagtatttagttttattcccttttttattgcccagttttttggt
tttttttttttgttttgtttttgtttgtttatttggttttttggtcaacg
tagattttttaaaaagggaataatcgccgggcgtggtggcgcatgccttt
aatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggcc
agcctggtctacaaagtgagctccaggacagccagggctacacagagaaa
ccctgtctcgaaaaaacaaaacaaaacaaaaaaatctacgttgagtattt
gtgggcaaaaatgttatgcacattctaacctctccttagtaaatgtagtg
agagaatttgagattcaagagggagctcccatcaccatcatgtgtctgtc
ctactgatgatcctccctacttggaactattttcactaagcagtgataac
aaggtttaggggtaaagggaataattggaagcttctacagtaaatactgc
aagctagtgtgatacaatgtaatactaaatgaaaacccacacttattctc
atgtactaatttcagaccaacccaatatgaccgaaaggtttgtgacacag
caccttgagatgcaattacacttgctctgcatttgtaggcctcacacaat
catactttttgaacaagcctgaaaaatgacccagtcataactcattcctt
agttttccttaggaaagctgaagactggcatttcttccatctgctgtgga
aaagggaagcattctcggggattcagttcttagctacttgggaactgagc
aggaagattagctatgctcatctttacaaaccagtcttaaataacaagtg
attaaaagaaaattttttaaaccccagaagtatcacaattcagg

gaattcttcacatcaaagggtcctggttctgcagtgatgacctgacaggt
tctcaataattctaagaagaactttcaaaacaaccgaaccgaggcagagc
ctacaatgaacactgataccatccaaccagacacagtgtggtgagagaag
agccttggctcctgagacggtcctcagagagagtcgggtcaactgactcc
agacagcgtaggctgagggactgacatatccaggtcagctagcaagagaa
attgcaatctgacataattaggagtcacttgaggaagaggcctgtgacca
gagtgccgtggcatgctggacaaacttgaatcttatttcaaagccagtga
gaatattcatcacttgcaagaagtcatgtgggaccaggcaagtatcagaa
tgtcctcaacagcattgagtcccatgtggagtgcaggagtgtccaacatg
ccaccatgggttgcacgggacccaggatatataggaatgcagcccaacat
tgacatgatgaggggcatgtgtgtgtgtttgtgtgtgtgtgtgtgtgact
tgattattgcagtccttgagtatagacttcatagatgactacagtgtatc
ccaccatcaaaaggcttgaacaggctcatattaaaacatggaagaatcag
agaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191484080_191485181
seq2: B6Ng01-217N20.b_46_1139

seq1  GAATTCTATAAATAAAATATAATTTTAAACTCTAAAAAAATATAAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAATAAAATATAATTTTAAACTCTAAAAAAATATAAAAGTA  50

seq1  TTGAAATTAATAGGCTGTCACATCCTGTAAAACTTGACATTAATGCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTAATAGGCTGTCACATCCTGTAAAACTTGACATTAATGCTGAA  100

seq1  GTCCTTGAAAGTAATACACCTAATTTTAATTACCTTAGTTATTATTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAAAGTAATACACCTAATTTTAATTACCTTAGTTATTATTTTTC  150

seq1  TGATATCTCAAGTAGCTTCATAAAAATGATGTATAAAACAACAATAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTCAAGTAGCTTCATAAAAATGATGTATAAAACAACAATAAGGA  200

seq1  AGTTTAGAGTATTTAGTTTTATTCCCTTTTTTATTGCCCAGTTTTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAGTATTTAGTTTTATTCCCTTTTTTATTGCCCAGTTTTTTGGT  250

seq1  TTTTTTTTTTTGTTTTGTTTTTGTTTGTTTATTTGGTTTTTTGGTCAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGTTTTGTTTTTGTTTGTTTATTTGGTTTTTTGGTCAACG  300

seq1  TAGATTTTTTAAAAAGGGAATAATCGCCGGGCGTGGTGGCGCATGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTTAAAAAGGGAATAATCGCCGGGCGTGGTGGCGCATGCCTTT  350

seq1  AATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCC  400

seq1  AGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTACACAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTACACAGAGAAA  450

seq1  CCCTGTCTCGAAAAAACAAAACAAAACAAAAAAATCTACGTTGAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGAAAAAACAAAACAAAACAAAAAAATCTACGTTGAGTATTT  500

seq1  GTGGGCAAAAATGTTATGCACATTCTAACCTCTCCTTAGTAAATGTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAAAAATGTTATGCACATTCTAACCTCTCCTTAGTAAATGTAGTG  550

seq1  AGAGAATTTGAGATTCAAGAGGGAGCTCCCATCACCATCATGTGTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTTGAGATTCAAGAGGGAGCTCCCATCACCATCATGTGTCTGTC  600

seq1  CTACTGATGATCCTCCCTACTTGGAACTATTTTCACTAAGCAGTGATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATGATCCTCCCTACTTGGAACTATTTTCACTAAGCAGTGATAAC  650

seq1  AAGGTTTAGGGGTAAAGGGAATAATTGGAAGCTTCTACAGTAAATACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTAGGGGTAAAGGGAATAATTGGAAGCTTCTACAGTAAATACTGC  700

seq1  AAGCTAGTGTGATACAATGTAATACTAAATGAAAACCCACACTTATTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTGTGATACAATGTAATACTAAATGAAAACCCACACTTATTCTC  750

seq1  ATGTACTAATTTCAGACCAACCCAATATGACCGAAAGGTTTGTGACACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTAATTTCAGACCAACCCAATATGACCGAAAGGTTTGTGACACAG  800

seq1  CACCTTGAGATGC-ATTACAC-TGCTCTGCATTTGTAGGCCTCACACAAT  848
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  CACCTTGAGATGCAATTACACTTGCTCTGCATTTGTAGGCCTCACACAAT  850

seq1  CATAC-TTTTGAACAAGCCTGAAAAATGACCCAGTCATAACTCATT-CTT  896
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  CATACTTTTTGAACAAGCCTGAAAAATGACCCAGTCATAACTCATTCCTT  900

seq1  AGTTTTCCTTAGGAAAGCTGAAGACTGGCATTTCTTCCATCTGCTGTGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCTTAGGAAAGCTGAAGACTGGCATTTCTTCCATCTGCTGTGGA  950

seq1  AAAGGAAAGCAGTCTCGGGGATTCAGTTC-TAGCTACTTGGGAAACTGAG  995
      ||||| ||||| ||||||||||||||||| |||||||||||| |||||| 
seq2  AAAGGGAAGCATTCTCGGGGATTCAGTTCTTAGCTACTTGGG-AACTGA-  998

seq1  GCAGGAAGATTAGCTATGCTCAACCTTTAACAAAACCCAGTCTAAAATAA  1045
      |||||||||||||||||||||| |  || |||||  ||||||| ||||||
seq2  GCAGGAAGATTAGCTATGCTCATC--TTTACAAA--CCAGTCTTAAATAA  1044

seq1  ACAAAGTGAATAAAAAGAAAAATTTTTTAAAACCCACAGAAGTATCACAA  1095
         |||||| |||||   |||||||||||||  || |||||||||||| |
seq2  --CAAGTGATTAAAA--GAAAATTTTTTAAA--CCCCAGAAGTATCAC-A  1087

seq1  ATTCAGG  1102
      |||||||
seq2  ATTCAGG  1094


seq1: chr1_191663494_191664147
seq2: B6Ng01-217N20.g_67_723 (reverse)

seq1  ACGTTCTCTGATTC-TCCATGTTTTAATATGAGCCTGTTC-AGCCTTTTG  48
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  ACGTTCTCTGATTCTTCCATGTTTTAATATGAGCCTGTTCAAGCCTTTTG  50

seq1  ATGGTGGGATACACTGTTGTCATCTATGAAGTCTATACTCAAGGACTGC-  97
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  ATGGTGGGATACACTGTAGTCATCTATGAAGTCTATACTCAAGGACTGCA  100

seq1  ATAATCAAGTCACACACACACACACACAAACACACACACATGCCCCTCAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAGTCACACACACACACACACAAACACACACACATGCCCCTCAT  150

seq1  CATGTCAATGTTGGGCTGCATTCCTATATATCCTGGGTCCCGTGCAACCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAATGTTGGGCTGCATTCCTATATATCCTGGGTCCCGTGCAACCC  200

seq1  ATGGTGGCATGTTGGACACTCCTGCACTCCACATGGGACTCAATGCTGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCATGTTGGACACTCCTGCACTCCACATGGGACTCAATGCTGTT  250

seq1  GAGGACATTCTGATACTTGCCTGGTCCCACATGACTTCTTGCAAGTGATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATTCTGATACTTGCCTGGTCCCACATGACTTCTTGCAAGTGATG  300

seq1  AATATTCTCACTGGCTTTGAAATAAGATTCAAGTTTGTCCAGCATGCCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTCACTGGCTTTGAAATAAGATTCAAGTTTGTCCAGCATGCCAC  350

seq1  GGCACTCTGGTCACAGGCCTCTTCCTCAAGTGACTCCTAATTATGTCAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTGGTCACAGGCCTCTTCCTCAAGTGACTCCTAATTATGTCAGA  400

seq1  TTGCAATTTCTCTTGCTAGCTGACCTGGATATGTCAGTCCCTCAGCCTAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTTCTCTTGCTAGCTGACCTGGATATGTCAGTCCCTCAGCCTAC  450

seq1  GCTGTCTGGAGTCAGTTGACCCGACTCTCTCTGAGGACCGTCTCAGGAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGGAGTCAGTTGACCCGACTCTCTCTGAGGACCGTCTCAGGAGC  500

seq1  CAAGGCTCTTCTCTCACCACACTGTGTCTGGTTGGATGGTATCAGTGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTTCTCTCACCACACTGTGTCTGGTTGGATGGTATCAGTGTTC  550

seq1  ATTGTAGGCTCTGCCTCGGTTCGGTTGTTTTGAAAGTTCTTCTTAGAATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGGCTCTGCCTCGGTTCGGTTGTTTTGAAAGTTCTTCTTAGAATT  600

seq1  ATTGAGAACCTGTCAGGTCATCACTGCAGAACCAGGACCCTTTGATGTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAACCTGTCAGGTCATCACTGCAGAACCAGGACCCTTTGATGTGA  650

seq1  AGAATTC  654
      |||||||
seq2  AGAATTC  657


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