BAC Information

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BAC

Clone NameB6Ng01-218A13
Chromosome1 (Build37)
Map Location 165,418,211 - 165,419,103
singlet/doubletsinglet
Overlap genenone
Upstream gene5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
Downstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218A13.bB6Ng01-218A13.g
ACCGA034271GA034272
length1,1481,146
definitionB6Ng01-218A13.b B6Ng01-218A13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaccctttggaataggtagcaagtgggaacttggggcagatgta
cttgtctggatgggtccatgagaagtagtagagtgagtttcctgtagctt
ataagtttataaaagagatagcatgagttagcagcatgagcagtctttaa
aatgagccttttgtggagcagaaggaactggattaaaaagttggatcatt
ttattagagttaggcaaatttataggaactcagataatattatagcagtg
gcatagcaagaagaggaaatatgaagcatttaattaatggaaacagttta
ggtaaggagatatcagactatatctgtgaaagctttcttctagctgtcaa
tgtagtcaaaagtctgagaaataaacaaaaatctagcagctatataccag
ttatatattatttaaaacatgacagtccactagcaaacagttctctgtgg
tctctatagtctccatggcaacttgggctgtcagtgtagctttcaagcac
agaagatgcagggctttttctctgtggaatggatacacgtgacatgagaa
atggcttatcttggcttagctaagtcatttgactcagagtacccagtttt
gtccactgcgtatttcagtgatcatcatatcaccatccagacggcatcct
gtagctctgtccacatcttctgagacttcgtgggagaaaccttagaggct
tttgggaattctgtcagtcataaacttaacagtcaacaaacttctgacaa
gattgagctcgatatagattggttataactgaacaggatttaatgacagt
agtaaaaatcatactggacaggatagaaatgagaaccttacgtaacttta
gcaaagaggcatatggctagaaccagtataagacagctggcaacagtggc
ataaaattgtggtgacagaaaacgagtttgtccaggcagctttaagcctg
tgacataaactgagcacgcaggcagcatggggctgtcactgaaccttttg
tactggcgtcctgagtaaggagcttggtgacaggtccgtagaaagtcaac
tagaaacttcaggtcgtcatgtgaataaccttgaaacttggcaggtggca
gcttgataaaatttctttcatttttatgaagccagaagctcttggatt
gaattccagagcccttccaagctctttctagactcttctatattaatgat
ttttatttttaatggtatatatcttttggtttcccttttggactaaggat
atgatttcttattcccccacttttggaaaaatcctctctctctctctctc
tctctctctctatatatatatatatatatatatatacatatatatatata
cacacacacatatatatgtatatatatacttgctagcacattttatttat
ttatttatttatttagatatttatttagatattttctttatatacatttc
aaatactatcccgaaagttccctatactctccctccgccctgctccttaa
cccacccactcctgcttcttggccctggaattcccctgtagtggggcata
taaagtttgcaataccaaggagcctctcttcccagtgatggccgactagg
ccatcttctgctacatatgcagctagagatatgagctctggggatactgg
ttagtttatattgttgttccacctatagcgttgcagaccctttcagcttc
ttgggtgctttctctagcttctccattggcagccctgtgttccatcttat
agatgactgtgagcatccacttctgtatttgccaggcactggcatagcct
cttatgagacagctataacagggtcccttcagcaaaatctttctggcata
tgccatagtgtttgggcttggtggctgactatggaatggatccccaggtg
gggtagtctctggatagtccatcctttcgtcttagctccaactttgtctc
tgtaactcctttcaagggtattttgctccccattccagaaggaacaaagt
atccacactttggtcttccttcttcttgcttttcatgtgttttgcaattt
tatcttggtattctagttctgggctatatcacttatcagtgcgtacatat
cagtgctctttgtgatggtactcactagatgatatctccagatcatcatt
tgcccagaattcatattcatgtttatagctgagcagtagtatcatggtaa
tgtaccaatttctgtatcattctcagtgagacgtctggatctctgctagc
atcagcgactcgatctgattgatctatcagacagatggatatgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165418211_165419103
seq2: B6Ng01-218A13.b_304_1193

seq1  AGAAGAGGAAATATGAAGCATTTAATTAATGGAAACAGTTTAGGTAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGAAATATGAAGCATTTAATTAATGGAAACAGTTTAGGTAAGGA  50

seq1  GATATCAGACTATATCTGTGAAAGCTTTCTTCTAGCTGTCAATGTAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGACTATATCTGTGAAAGCTTTCTTCTAGCTGTCAATGTAGTCA  100

seq1  AAAGTCTGAGAAATAAACAAAAATCTAGCAGCTATATACCAGTTATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGAGAAATAAACAAAAATCTAGCAGCTATATACCAGTTATATAT  150

seq1  TATTTAAAACATGACAGTCCACTAGCAAACAGTTCTCTGTGGTCTCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAACATGACAGTCCACTAGCAAACAGTTCTCTGTGGTCTCTATA  200

seq1  GTCTCCATGGCAACTTGGGCTGTCAGTGTAGCTTTCAAGCACAGAAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATGGCAACTTGGGCTGTCAGTGTAGCTTTCAAGCACAGAAGATG  250

seq1  CAGGGCTTTTTCTCTGTGGAATGGATACACGTGACATGAGAAATGGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTTTTCTCTGTGGAATGGATACACGTGACATGAGAAATGGCTTA  300

seq1  TCTTGGCTTAGCTAAGTCATTTGACTCAGAGTACCCAGTTTTGTCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTTAGCTAAGTCATTTGACTCAGAGTACCCAGTTTTGTCCACTG  350

seq1  CGTATTTCAGTGATCATCATATCACCATCCAGACGGCATCCTGTAGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTCAGTGATCATCATATCACCATCCAGACGGCATCCTGTAGCTCT  400

seq1  GTCCACATCTTCTGAGACTTCGTGGGAGAAACCTTAGAGGCTTTTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATCTTCTGAGACTTCGTGGGAGAAACCTTAGAGGCTTTTGGGAA  450

seq1  TTCTGTCAGTCATAAACTTAACAGTCAACAAACTTCTGACAAGATTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAGTCATAAACTTAACAGTCAACAAACTTCTGACAAGATTGAGC  500

seq1  TCGATATAGATTGGTTATAACTGAACAGGATTTAATGACAGTAGTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATATAGATTGGTTATAACTGAACAGGATTTAATGACAGTAGTAAAAA  550

seq1  TCATACTGGACAGGATAGAAATGAGAACCTTAGGTAACTTTAGCAAAGAG  600
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATACTGGACAGGATAGAAATGAGAACCTTACGTAACTTTAGCAAAGAG  600

seq1  GCATATGGCTAGAACCAGTATAAGACAGCTGGCAACAGTGGCATAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGCTAGAACCAGTATAAGACAGCTGGCAACAGTGGCATAAAATT  650

seq1  GTGGTGACAGAAAACGAGTTTGTCCAGGCAGCTTTAAGCCTGTGACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACAGAAAACGAGTTTGTCCAGGCAGCTTTAAGCCTGTGACATAA  700

seq1  ACTGAGCACGCAGGCAGCATGGGGCTGTCACTGAACCTTTTGTACTGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCACGCAGGCAGCATGGGGCTGTCACTGAACCTTTTGTACTGGCG  750

seq1  TCCTGAGTAAAGAGCTTGGTGACAGGTCCGTAGACAGTCAAACTAGAAAC  800
      |||||||||| ||||||||||||||||||||||| |||| ||||||||||
seq2  TCCTGAGTAAGGAGCTTGGTGACAGGTCCGTAGAAAGTC-AACTAGAAAC  799

seq1  -TCAGGTCGTCATGTGAATAA-CTTGAGACTTTGGCAGTGGGCAGCTTGA  848
       |||||||||||||||||||| ||||| || |||||||  ||||||||||
seq2  TTCAGGTCGTCATGTGAATAACCTTGAAAC-TTGGCAGGTGGCAGCTTGA  848

seq1  TAAAATTTCTTTTCATTTTAATGAAGCACAGGAAGCTCTTGGATT  893
      ||||||||| ||||||||| ||||||| || ||||||||||||||
seq2  TAAAATTTC-TTTCATTTTTATGAAGC-CA-GAAGCTCTTGGATT  890