BAC Information

Click to search

BAC

Clone NameB6Ng01-218H08
Chromosome1 (Build37)
Map Location 167,536,517 - 167,537,537
singlet/doubletsinglet
Overlap geneMpzl1
Upstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625
Downstream geneRcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218H08.bB6Ng01-218H08.g
ACCGA034582GA034583
length1,0261,152
definitionB6Ng01-218H08.b B6Ng01-218H08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggttactgttttcctgttggtccattgtgtcctttggatcgtg
gcacctgctttatcagtgttttacgttttaggttgtcagcaccagatagg
gaaagaatgccatccatcattaagtaagagtgtctaactcttgggtcagg
catgtggttcacaccttcaatcccagcacttgggaggcaaaagcagggag
atttctgagtttgaggccagcctggtctacaaagtgggttccagaatggc
cagggctctccccaaaaacccagaatggtggctttctttggtggatgagt
gtgtgatttgaatgtgttctccaaatgtttgtgctgtcccccaagcctgt
ttggaggtccttagggtgagattgggtgaagtggtgaaagtagggttgcc
aggacgcgttagtgactctagaagcagaggccctggaacataggttccat
ttccccacaggataccctctgccaggttctgatgcagcaaactactcctc
agtgcgacactggctttcctgctgcatgaagatgggttccacacttgaca
acactaaactgagttctcttctcttctcccgtctctgttctttgagggta
gttgtgttctttgaagtggctctgtgcgatttggtcatgattgttctgcc
tccttcagccagtcccactttccttgtattatctttagagataagaacct
ttactgcctctcctcctctggtccctggactggcacacagtgcctgttcc
tttctatggcgtgacgtgtgggggtcatcgttgctggtgcagagtacaag
ttagggactattttggagatgataacagaatggaaaactggattatttaa
aagaaccaaatttttttactgggttgacaatttattgtttatttccttgc
tggagatgggggagaaatcagacagacagcacctgaattttgagcaggtt
aaatgtaaccagccaggattctatgttaaattactattagtcacatgaac
tcttggattaaagatgggtttaattt
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaaat
gttcagcatccttaatcatcagggaaatgcaactcaaaacaatcctgaga
gtccacctcacaccagccagaatggctaagataaaaaattcaggtgagag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctc
agaaaattggacatagtactactggaggatcccacaatacctctcctggg
catatatccagaagatgttccaactggtaaaaagaacacatgctcaacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgtccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaatgaatgaattcatgaaattcctaggca
aatggatggacctggagggcatcatccttagtgaggtaacccaatcacaa
aagagctcacatgatatgtactcactgataagtggatattagcccagaaa
cttagaatacccaaagatacaagatacaatttgcaaaacacatgaaactc
aagaagaacgaagaccaaagtgtagacaaaacaccatggaaggagttaca
gagacaaagattggagctgagacgaaaggatggaccatctagagactgcc
atacccggggatccatcccataatcagcctccaaacactgacaccattgc
acacactagcaagattttgctgaaaggacactgatatagctatctcttgt
gaggctatgccggggcctagcaaacacagaagtggatgctcatagtcaga
tattggatggatcacagggcccccaatggaggaactagagaaggtaccca
aggagctaaaggggtctgcaccctatagtggaacacaatatgaactaacc
agtaccccctggagcttgtgtcttctagctgcatatgttatcagaagatg
gccctagtcggccatcagtgaaaggagaggtcccaatgtcttgcaaaatt
taatatgcctcagttaaggagacttcaggccagaaagttgttcgcgcggc
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167536517_167537537
seq2: B6Ng01-218H08.b_42_1067 (reverse)

seq1  AATTTAAACCCATCTTTGATCCAA-AGTTCATGTGACTACT-GTTATTTA  48
      || |||||||||||||| |||||| |||||||||||||| | || |||||
seq2  AAATTAAACCCATCTTTAATCCAAGAGTTCATGTGACTAATAGTAATTTA  50

seq1  ACATAG-ATCCTGGCTGGTTACATTTTACCTGCTCAAAA-TCAGTTGCTG  96
      |||||| ||||||||||||||||||| |||||||||||| |||| |||||
seq2  ACATAGAATCCTGGCTGGTTACATTTAACCTGCTCAAAATTCAGGTGCTG  100

seq1  TCTGTCTTGCTTTCTCCCCCATCTCCAGCAAGGAAATAAACAATAAATTG  146
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTC-TGATTTCTCCCCCATCTCCAGCAAGGAAATAAACAATAAATTG  149

seq1  TCAACCCAGTAAAAAAATTTGGTTCTTTTAAATAATCCAGTTTTCCATTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCAGTAAAAAAATTTGGTTCTTTTAAATAATCCAGTTTTCCATTC  199

seq1  TGTTATCATCTCC-AAATAGTCCCTAACTTGTACTCTGCACCAGCAACGA  245
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTTATCATCTCCAAAATAGTCCCTAACTTGTACTCTGCACCAGCAACGA  249

seq1  TGACCCCCACACGTCACGCCATAG-AAGGAACAGGCACTGTGTGCCAGTC  294
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACCCCCACACGTCACGCCATAGAAAGGAACAGGCACTGTGTGCCAGTC  299

seq1  CAGGGACCAGAGGAGGAGAGGCAGTAAAGGTTCTTATCTCTAAAGATAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACCAGAGGAGGAGAGGCAGTAAAGGTTCTTATCTCTAAAGATAAT  349

seq1  ACAAGGAAAGTGGGACTGGCTGAAGGAGGCAGAACAATCATGACCAAATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAAGTGGGACTGGCTGAAGGAGGCAGAACAATCATGACCAAATC  399

seq1  GCACAGAGCCACTTCAAAGAACACAACTACCCTCAAAGAACAGAGACGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGCCACTTCAAAGAACACAACTACCCTCAAAGAACAGAGACGGG  449

seq1  AGAAGAGAAGAGAACTCAGTTTAGTGTTGTCAAGTGTGGAACCCATCTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAGAGAACTCAGTTTAGTGTTGTCAAGTGTGGAACCCATCTTC  499

seq1  ATGCAGCAGGAAAGCCAGTGTCGCACTGAGGAGTAGTTTGCTGCATCAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCAGGAAAGCCAGTGTCGCACTGAGGAGTAGTTTGCTGCATCAGA  549

seq1  ACCTGGCAGAGGGTATCCTGTGGGGAAATGGAACCTATGTTCCAGGGCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCAGAGGGTATCCTGTGGGGAAATGGAACCTATGTTCCAGGGCCT  599

seq1  CTGCTTCTAGAGTCACTAACGCGTCCTGGCAACCCTACTTTCACCACTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTAGAGTCACTAACGCGTCCTGGCAACCCTACTTTCACCACTTC  649

seq1  ACCCAATCTCACCCTAAGGACCTCCAAACAGGCTTGGGGGACAGCACAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATCTCACCCTAAGGACCTCCAAACAGGCTTGGGGGACAGCACAAA  699

seq1  CATTTGGAGAACACATTCAAATCACACACTCATCCACCAAAGAAAGCCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAGAACACATTCAAATCACACACTCATCCACCAAAGAAAGCCAC  749

seq1  CATTCTGGGTTTTTGGGGAGAGCCCTGGCCATTCTGGAACCCACTTTGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGGTTTTTGGGGAGAGCCCTGGCCATTCTGGAACCCACTTTGTA  799

seq1  GACCAGGCTGGCCTCAAACTCAGAAATCTCCCTGCTTTTGCCTCCCAAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTCAAACTCAGAAATCTCCCTGCTTTTGCCTCCCAAGT  849

seq1  GCTGGGATTGAAGGTGTGAACCACATGCCTGACCCAAGAGTTAGACACTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTGAAGGTGTGAACCACATGCCTGACCCAAGAGTTAGACACTC  899

seq1  TTACTTAATGATGGATGGCATTCTTTCCCTATCTGGTGCTGACAACCTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAATGATGGATGGCATTCTTTCCCTATCTGGTGCTGACAACCTAA  949

seq1  AACGTAAAACACTGATAAAGCAGGTGCCACGATCCAAAGGACACAATGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAAAACACTGATAAAGCAGGTGCCACGATCCAAAGGACACAATGGA  999

seq1  CCAACAGGAAAACAGTAACCTGAATTC  1021
      |||||||||||||||||||||||||||
seq2  CCAACAGGAAAACAGTAACCTGAATTC  1026