BAC Information

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BAC

Clone NameB6Ng01-218K19
Chromosome1 (Build37)
Map Location 59,378,753 - 59,534,343
singlet/doubletdoublet
Overlap geneAls2cr7
Upstream geneAox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2
Downstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218K19.bB6Ng01-218K19.g
ACCGA034739GA034740
length2481,156
definitionB6Ng01-218K19.b B6Ng01-218K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,534,096 - 59,534,343)(59,378,753 - 59,379,937)
sequence
ctgtcctgcctcaggccagtcacctaacttccctagttccctccagtgtg
tggagaggattaatggtgtaagagctgtaaggtgcttatgacccaaacac
aagaaaatcatcacaacagcattctggtttagttatgggatgcaaagcat
gagatgaaataaaaggcccatttagcagtgtatctgtggcttggggtctt
tgctgaagttatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtaa
gaattccaactgaactcagataagagctcacttaagacagctgctgtgga
aggagttggaggaaaagccgccctggtgatttattattgtctttggaaga
aagcatttttagaggctgctgaagccagagaaacagaccctcttgaaatg
gtgctgtgtaagatgcttgtttgtccatagctctttctctcattgatcgc
tcaaaacttaactactgaaaaaaaaatcaatagcaaagaggcaaggtcat
ctggcttgtgggtatctgcatgcaagtgggagggtaggtcagagacaggc
tgtgggccttggctctgcttcccagcagctccccaactgaccctgcctgc
tttgctgatgtagctacagaaaagatgtggagagagtctgaatttcagtc
tatacagaaccagagggctcaagttcaaaatgttgtttgccctcctgggg
tccaagggcatccatctggaattcctgagaggctcgtttgcccttgttac
attctctctttcctgttttgggggaaaaaaaaaaaaaaaaaacctcactc
actaagtaggagtctgatgttgtgttctgcagtttttatacacactggtt
aatggacttctcacaacagtctccctgggttgctgcagttgcggaagtga
agctcaggcaagcatgtcgagttgctggcaagtgctaggccccgctttct
gggctggatcagcaatcctccaaccttaacctcactagcaacatctggag
cctattaaagacataataacagcaaacaactaaccgatgtgtggccctcc
cagacctgttaaatcagctctctagggggtggagccaggccgcctttctt
ttaaaagctctgcagtgaggccaccctaccctgttggcctgcgcccatct
cctgaaactctgttcagagcaaaagggagaggaggagagaaaacatgaga
ccaggagcttttggagactgtacacatgccagaggccttatctaatcttt
ccggatactcaaatgattctcattacagttctgaaactctctgtgcctca
ccagacaggttagaatctcaccccttagtcccaaagcacctggatggcga
gatggaacctggaattgctcagttactatcaactataaaagtctggaact
gggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59534096_59534343
seq2: B6Ng01-218K19.b_48_295 (reverse)

seq1  TTACACACACACACACACACACACACACATATATATATAACTTCAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACACACACACACACACACACACATATATATATAACTTCAGCAAA  50

seq1  GACCCCAAGCCACAGATACACTGCTAAATGGGCCTTTTATTTCATCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAAGCCACAGATACACTGCTAAATGGGCCTTTTATTTCATCTCAT  100

seq1  GCTTTGCATCCCATAACTAAACCAGAATGCTGTTGTGATGATTTTCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCATCCCATAACTAAACCAGAATGCTGTTGTGATGATTTTCTTGT  150

seq1  GTTTGGGTCATAAGCACCTTACAGCTCTTACACCATTAATCCTCTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTCATAAGCACCTTACAGCTCTTACACCATTAATCCTCTCCACA  200

seq1  CACTGGAGGGAACTAGGGAAGTTAGGTGACTGGCCTGAGGCAGGACAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGGGAACTAGGGAAGTTAGGTGACTGGCCTGAGGCAGGACAG  248

seq1: chr1_59378753_59379937
seq2: B6Ng01-218K19.g_63_1218

seq1  GAATTCCAACTGAACTCAGATAAGAGCTCACTTAAGACAGCTGCTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGAACTCAGATAAGAGCTCACTTAAGACAGCTGCTGTGGA  50

seq1  AGGAGTTGGAGGAAAAGCCGCCCTGGTGATTTATTATTGTCTTTGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGAGGAAAAGCCGCCCTGGTGATTTATTATTGTCTTTGGAAGA  100

seq1  AAGCATTTTTAGAGGCTGCTGAAGCCAGAGAAACAGACCCTCTTGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTTAGAGGCTGCTGAAGCCAGAGAAACAGACCCTCTTGAAATG  150

seq1  GTGCTGTGTAAGATGCTTGTTTGTCCATAGCTCTTTCTCTCATTGATCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGTAAGATGCTTGTTTGTCCATAGCTCTTTCTCTCATTGATCGC  200

seq1  TCAAAACTTAACTACTGAAAAAAAAATCAATAGCAAAGAGGCAAGGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTTAACTACTGAAAAAAAAATCAATAGCAAAGAGGCAAGGTCAT  250

seq1  CTGGCTTGTGGGTATCTGCATGCAAGTGGGAGGGTAGGTCAGAGACAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGTGGGTATCTGCATGCAAGTGGGAGGGTAGGTCAGAGACAGGC  300

seq1  TGTGGGCCTTGGCTCTGCTTCCCAGCAGCTCCCCAACTGACCCTGCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCTTGGCTCTGCTTCCCAGCAGCTCCCCAACTGACCCTGCCTGC  350

seq1  TTTGCTGATGTAGCTACAGAAAAGATGTGGAGAGAGTCTGAATTTCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGATGTAGCTACAGAAAAGATGTGGAGAGAGTCTGAATTTCAGTC  400

seq1  TATACAGAACCAGAGGGCTCAAGTTCAAAATGTTGTTTGCCCTCCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAACCAGAGGGCTCAAGTTCAAAATGTTGTTTGCCCTCCTGGGG  450

seq1  TCCAAGGGCATCCATCTGGAATTCCTGAGAGGCTCGTTTGCCCTTGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGCATCCATCTGGAATTCCTGAGAGGCTCGTTTGCCCTTGTTAC  500

seq1  ATTCTCTCTTTCCTGTTTTGGGGGAAAAAAAAAAAAAAAAAACCTCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTTTCCTGTTTTGGGGGAAAAAAAAAAAAAAAAAACCTCACTC  550

seq1  ACTAAGTAGGAGTCTGATGTTGTGTTCTGCAGTTTTTATACACACTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTAGGAGTCTGATGTTGTGTTCTGCAGTTTTTATACACACTGGTT  600

seq1  AATGGACTTCTCACAACAGTCTCCCTGGGTTGCTGCAGTTGCGGAAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTTCTCACAACAGTCTCCCTGGGTTGCTGCAGTTGCGGAAGTGA  650

seq1  AGCTCAGGCAAGCATGTCGAGTTGCTGGCAAGTGCTAGGCCCCGCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCAAGCATGTCGAGTTGCTGGCAAGTGCTAGGCCCCGCTTTCT  700

seq1  GGGCTGGATCAGCAATCCTCCAACCTTAACCTCACTAGCAACATCTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGATCAGCAATCCTCCAACCTTAACCTCACTAGCAACATCTGGAG  750

seq1  CCTATTAAAGACATAATAACAGCAAACAACTAACCGATGTGTGGCCCCTC  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTATTAAAGACATAATAACAGCAAACAACTAACCGATGTGTGG-CCCTC  799

seq1  CCAGACCTGTTAAATCAGGCTCTCTAGGGGGTGGAGCCAGGCCGCC-TTC  849
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  CCAGACCTGTTAAATCA-GCTCTCTAGGGGGTGGAGCCAGGCCGCCTTTC  848

seq1  TTTTAAAAGCTCTGCAGGTGAGGCCACCCTACCCTGTTGGCCTGCGCCCC  899
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  TTTTAAAAGCTCTGCA-GTGAGGCCACCCTACCCTGTTGGCCTGCG-CCC  896

seq1  ATCTCCTGAAACTCTGTTCAAGAGCAAAAGGAAGA-GAGGAGAGAAAAAC  948
      ||||||||||||||||||| ||||||||||| ||| ||||||||||||  
seq2  ATCTCCTGAAACTCTGTTC-AGAGCAAAAGGGAGAGGAGGAGAGAAAA--  943

seq1  AATGAGACCAGGAGCTTTT-GAGACTGTACCACATGCCAGAGGCCTTATC  997
       |||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CATGAGACCAGGAGCTTTTGGAGACTGTA-CACATGCCAGAGGCCTTATC  992

seq1  TAATCTTTCCGGATACTCCAAAATGATTCTCATTTACAGTTCTGGAAACT  1047
      ||||||||||||||||||  |||||||||||| |||||||||| ||||||
seq2  TAATCTTTCCGGATACTC--AAATGATTCTCA-TTACAGTTCT-GAAACT  1038

seq1  CTCTGTTGCTTCACCAGACAGGTTAAGAAATCCTCACCCCTAAGTCCCAG  1097
      ||||| ||| |||||||||||||| ||||   ||||||||| ||||||| 
seq2  CTCTG-TGCCTCACCAGACAGGTT-AGAA--TCTCACCCCTTAGTCCCAA  1084

seq1  AGCACCTGAATGGCAGAGAGATTGGAGCTGGGATTTTGTGCTCATGTTAC  1147
      |||||||| |||||   ||||| | | |||| ||    |||||| |||||
seq2  AGCACCTGGATGGC---GAGATGGAACCTGGAAT----TGCTCA-GTTAC  1126

seq1  TAAATCACACCATAAAAAAAAATCTGGAACTGGAGAGA  1185
      |  |||| || ||    |||| ||||||||||| ||||
seq2  T--ATCA-ACTAT----AAAAGTCTGGAACTGG-GAGA  1156